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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0097000 |
| Transcript ID | LotjaGi6g1v0097000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|A0A1J6IJH4|A0A1J6IJH4_NICAT Putative pectate lyase 5; Found in the gene: LotjaGi6g1v0097000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:21034177..21037132) extracted from Lotus japonicus Gifu genome v1.2.
ATTACCAAAGCACTCATAATGTGCCTTGTGAAGAATAATTACCTTAAATCGTGGAAATCTCGGATCTTAAGCACCAAATA GTTTTTTTATTAGGCACAAATTCCCAGTGTGTTCCCTATATATACTCTAAATTATCTTCACATTTCTTCACAAGCACACT CTAAACCCTCCCTCTGCTAACAAGTACTCCTCTCTGTTTCTCATTCTGTGGACAGTTCAAGCAATAGTTATGGCAATTCC AACCCCATTTCTGTTACTCTTGCTATTTCTTTTACCTTCCTTCATTTTCTCTTCCCCAGTTCAAGATCCTGAATTAGTAG TCGAAGAAGTACAAAGGTAGACAACAAGAATTTCCTCCATATCATAAAATTCATCCCACATTGACTATTCCTATATAGAG ATTTATTAAGCGTTCTCTCTCTAGTCAATATGAGACTTCTCAACAACGCATAATATATGTATATACTTGCATTTCTTAGA GTCATACTAAAATGGTATCAAAATCTGTGTTTTTTTGTTGTTGTTGCAGGAGCATTAATGCCTCAAGGAGAAACTTAGCA TTTCTTTCATGTGGGACAGGAAACCCCATTGATGATTGTTGGAGGTGTGACCCGAATTGGGCAAAGAATCGTAAGCGCCT AGCAGATTGTGCCATTGGATTTGGCAAGCACGCCATTGGAGGCAGAGATGGTAAAATCTACATAGTCACTGACCCAGGTG ATCATGCAGTGAACCCAAAGCCAGGAACATTAAGATACGGTGTGATCCAAGAAGAACCACTATGGATCATCTTCAAACGT GACATGGTGATCAAGCTGAAACAAGAGCTCATGATGAACTCATTCAAAACCATTGACGGTAGAGGAGCAAACGTGCATAT AGCTGGTGGACCATGCATCACTGTGCAATTTGTGACAAACATCATCATCCATGGGATCAACATCCATGACTGCAAAAGAG GAGGGAATACTTATGTGAGAGACTCACCTTCACATTATGGTTGGAGGACACTCTCTGATGGTGATGGGGTTTCTATCTTC GGTGGGAGCCATGTTTGGGTGGACCATTGTTCTCTGTCCAATTGCCGTGATGGATTGATTGATGTCATTCATGGATCTAC AGCTATCACTATCTCTAACAATTACATGACCCACCATAACAAGGTCATGCTTTTGGGCCATAGTGATTCTTTCACTCGTG ATAAGACTATGCAGGTCACCGTTGCCTTCAACCATTTTGGAGAAGGGCTAGTGCAGAGGATGCCAAGGTATGAAGAATTC AAAACCTTCTTTTTGAATAACAAAACAAGATGCTTTAGACTCTGTTTGGATGCAGAGCACGCACTTCTTAAAACTTATTC AGAATTTGTTTGAATGCAGATTAAATAGTACTTATTGGAGTTTATCAAATACTTTTTCTAGCATAAAAGCTCTAATGAAT GTTCTTTAGTGTGTATCCAAACAGACTCGATTGTTTTTCCTAATAGATACACTCTAATAAATATTATTTGATCCATATCC TAACGAAATCTGAACCGGATAGCTTTTTATGTATGTCTTTGAATTTAATTTGCATTTCTATTTTATCTCTTAATTTTTGT TTACATCTTTATATGTGTATGCAGATGCAGGTATGGATACTTCCATGTGGTAAACAATGACTACACGCAATGGGCAATGT ATGCCATAGGTGGGAGTGCTTCTCCAACCATCAATAGCCAAGGCAATAGATTTTTTGCTCCTAATGATGGGACCTTCAAA GAGGTTAGACATGGAGAAGATTTATGAATTTCCTCTTAATAAATGATAACTCTATTGCTGTTTCAAAATTGATGTTTTGA GTCTCCCACATTGATTTTTTTTTTAAACTGAATTCCACATTGGTTAAAAATTGGTAAGATAAACATAAAATTAGATATTG GCCTACATATATGATGGGTGAGAAGAAAAACATGGTTCATAAAATATGCTTTCTATGTGAATTGTAGTATATTACAAATA ACATATATTAATGATATCTATAAATCCATAGTTCTTAAATGAGACAATTTTTAACATGGTTCATAATTGAACTACTAAAT GTTGTTCGATCGGTTCTTTAGATATCTCGTTTTTTTTTTTGGGCTCATGTGTCTCCCCAACAAACTTGTTATTGAACAAA GAGGAAGAAAAATCAAAGTTATGTCTCATTTTACTTTTGGATTGAATAATTTGCTACAAATAGTATTGGTGCTCATTAAA AATGCAAGTTACTAATTTCAGGTAACAAAGCGTGAGAATTCACCACAGAGCCAATGGAAGAATTGGAATTGGAGATCTTC AGGGGATTTGATGTTAAACGGTGCCTTCTTTACAGCATCAGGGGCAGGTTCTTCTTCAAGCTATGCCAGAGCATCAAGTT TGGCAGCAAAATCATCATCATTGGTCAGTACTATCACAGCATCAGCTGGATCACTTAGCTGCAAAAAGGGCTCCCGCTGC TAGCTGATGAACCACAAAGTATCATGCATAGTAATAAATTAAGGCAAAAATTACCATATGCCAAGTGTATCTACTTTTGG AGAAACAAAAAAAAATGATTCAACTTTTTTGTACATTGAACTTTTTAGACATTTTGTTTTGTAACTACAACCTTAGCTTG TGTTTACAAATACAATAGTTTGATGAGGCTGATAGACACAAGCGAAAGAGTTGATATAATTGTATGTTAAGTGGAAAAGC AGAAAGGAGAAAAAGCAGGTTCAATGGAAATTTATTATACTTCCCCTATGTGTCTGTGCCTCTGGTTATCCCACAATGTA TTTGAATTATTATATGAAGGGATAATAATACCCCTCACATGGAGCGACGTGGTGAAACATTATCGTCTTTGGTAATTGTA ACCATGTAGATCATAGAAAAATGGGGCCATTATTTGCGGTCGACAACAACATTAATGAATTGGGTCTGCATTGATG
CDS sequence (LotjaGi6g1v0097000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATTCCAACCCCATTTCTGTTACTCTTGCTATTTCTTTTACCTTCCTTCATTTTCTCTTCCCCAGTTCAAGATCC TGAATTAGTAGTCGAAGAAGTACAAAGGAGCATTAATGCCTCAAGGAGAAACTTAGCATTTCTTTCATGTGGGACAGGAA ACCCCATTGATGATTGTTGGAGGTGTGACCCGAATTGGGCAAAGAATCGTAAGCGCCTAGCAGATTGTGCCATTGGATTT GGCAAGCACGCCATTGGAGGCAGAGATGGTAAAATCTACATAGTCACTGACCCAGGTGATCATGCAGTGAACCCAAAGCC AGGAACATTAAGATACGGTGTGATCCAAGAAGAACCACTATGGATCATCTTCAAACGTGACATGGTGATCAAGCTGAAAC AAGAGCTCATGATGAACTCATTCAAAACCATTGACGGTAGAGGAGCAAACGTGCATATAGCTGGTGGACCATGCATCACT GTGCAATTTGTGACAAACATCATCATCCATGGGATCAACATCCATGACTGCAAAAGAGGAGGGAATACTTATGTGAGAGA CTCACCTTCACATTATGGTTGGAGGACACTCTCTGATGGTGATGGGGTTTCTATCTTCGGTGGGAGCCATGTTTGGGTGG ACCATTGTTCTCTGTCCAATTGCCGTGATGGATTGATTGATGTCATTCATGGATCTACAGCTATCACTATCTCTAACAAT TACATGACCCACCATAACAAGGTCATGCTTTTGGGCCATAGTGATTCTTTCACTCGTGATAAGACTATGCAGGTCACCGT TGCCTTCAACCATTTTGGAGAAGGGCTAGTGCAGAGGATGCCAAGATGCAGGTATGGATACTTCCATGTGGTAAACAATG ACTACACGCAATGGGCAATGTATGCCATAGGTGGGAGTGCTTCTCCAACCATCAATAGCCAAGGCAATAGATTTTTTGCT CCTAATGATGGGACCTTCAAAGAGGTAACAAAGCGTGAGAATTCACCACAGAGCCAATGGAAGAATTGGAATTGGAGATC TTCAGGGGATTTGATGTTAAACGGTGCCTTCTTTACAGCATCAGGGGCAGGTTCTTCTTCAAGCTATGCCAGAGCATCAA GTTTGGCAGCAAAATCATCATCATTGGTCAGTACTATCACAGCATCAGCTGGATCACTTAGCTGCAAAAAGGGCTCCCGC TGCTAG
Protein sequence (LotjaGi6g1v0097000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIPTPFLLLLLFLLPSFIFSSPVQDPELVVEEVQRSINASRRNLAFLSCGTGNPIDDCWRCDPNWAKNRKRLADCAIGF GKHAIGGRDGKIYIVTDPGDHAVNPKPGTLRYGVIQEEPLWIIFKRDMVIKLKQELMMNSFKTIDGRGANVHIAGGPCIT VQFVTNIIIHGINIHDCKRGGNTYVRDSPSHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDVIHGSTAITISNN YMTHHNKVMLLGHSDSFTRDKTMQVTVAFNHFGEGLVQRMPRCRYGYFHVVNNDYTQWAMYAIGGSASPTINSQGNRFFA PNDGTFKEVTKRENSPQSQWKNWNWRSSGDLMLNGAFFTASGAGSSSSYARASSLAAKSSSLVSTITASAGSLSCKKGSR C
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| PANTHER | 3 | 401 | 399 | 2.2E-248 | – | |
| PANTHER | 3 | 401 | 399 | 2.2E-248 | – | |
| Phobius | 7 | 15 | 9 | - | – | |
| Phobius | 16 | 21 | 6 | - | – | |
| Phobius | 22 | 401 | 380 | - | – | |
| SUPERFAMILY | 37 | 395 | 359 | 1.73E-102 | ||
| Gene3D | 53 | 394 | 342 | 2.9E-123 | ||
| PRINTS | 76 | 93 | 18 | 2.8E-82 | ||
| PRINTS | 99 | 124 | 26 | 2.8E-82 | ||
| SMART | 127 | 324 | 198 | 1.1E-101 | ||
| Pfam | 133 | 318 | 186 | 1.6E-21 | ||
| PRINTS | 135 | 151 | 17 | 2.8E-82 | ||
| PRINTS | 199 | 220 | 22 | 2.8E-82 | ||
| PRINTS | 279 | 298 | 20 | 2.8E-82 | ||
| PRINTS | 301 | 320 | 20 | 2.8E-82 | ||
| PRINTS | 343 | 367 | 25 | 2.8E-82 | ||
| PRINTS | 372 | 395 | 24 | 2.8E-82 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0097000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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