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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0097000 |
| Transcript ID | LotjaGi6g1v0097000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|A0A1J6IJH4|A0A1J6IJH4_NICAT Putative pectate lyase 5; Found in the gene: LotjaGi6g1v0097000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:21034650..21036903) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAATTCCAACCCCATTTCTGTTACTCTTGCTATTTCTTTTACCTTCCTTCATTTTCTCTTCCCCAGTTCAAGATCC TGAATTAGTAGTCGAAGAAGTACAAAGGTAGACAACAAGAATTTCCTCCATATCATAAAATTCATCCCACATTGACTATT CCTATATAGAGATTTATTAAGCGTTCTCTCTCTAGTCAATATGAGACTTCTCAACAACGCATAATATATGTATATACTTG CATTTCTTAGAGTCATACTAAAATGGTATCAAAATCTGTGTTTTTTTGTTGTTGTTGCAGGAGCATTAATGCCTCAAGGA GAAACTTAGCATTTCTTTCATGTGGGACAGGAAACCCCATTGATGATTGTTGGAGGTGTGACCCGAATTGGGCAAAGAAT CGTAAGCGCCTAGCAGATTGTGCCATTGGATTTGGCAAGCACGCCATTGGAGGCAGAGATGGTAAAATCTACATAGTCAC TGACCCAGGTGATCATGCAGTGAACCCAAAGCCAGGAACATTAAGATACGGTGTGATCCAAGAAGAACCACTATGGATCA TCTTCAAACGTGACATGGTGATCAAGCTGAAACAAGAGCTCATGATGAACTCATTCAAAACCATTGACGGTAGAGGAGCA AACGTGCATATAGCTGGTGGACCATGCATCACTGTGCAATTTGTGACAAACATCATCATCCATGGGATCAACATCCATGA CTGCAAAAGAGGAGGGAATACTTATGTGAGAGACTCACCTTCACATTATGGTTGGAGGACACTCTCTGATGGTGATGGGG TTTCTATCTTCGGTGGGAGCCATGTTTGGGTGGACCATTGTTCTCTGTCCAATTGCCGTGATGGATTGATTGATGTCATT CATGGATCTACAGCTATCACTATCTCTAACAATTACATGACCCACCATAACAAGGTCATGCTTTTGGGCCATAGTGATTC TTTCACTCGTGATAAGACTATGCAGGTCACCGTTGCCTTCAACCATTTTGGAGAAGGGCTAGTGCAGAGGATGCCAAGGT ATGAAGAATTCAAAACCTTCTTTTTGAATAACAAAACAAGATGCTTTAGACTCTGTTTGGATGCAGAGCACGCACTTCTT AAAACTTATTCAGAATTTGTTTGAATGCAGATTAAATAGTACTTATTGGAGTTTATCAAATACTTTTTCTAGCATAAAAG CTCTAATGAATGTTCTTTAGTGTGTATCCAAACAGACTCGATTGTTTTTCCTAATAGATACACTCTAATAAATATTATTT GATCCATATCCTAACGAAATCTGAACCGGATAGCTTTTTATGTATGTCTTTGAATTTAATTTGCATTTCTATTTTATCTC TTAATTTTTGTTTACATCTTTATATGTGTATGCAGATGCAGGTATGGATACTTCCATGTGGTAAACAATGACTACACGCA ATGGGCAATGTATGCCATAGGTGGGAGTGCTTCTCCAACCATCAATAGCCAAGGCAATAGATTTTTTGCTCCTAATGATG GGACCTTCAAAGAGGTTAGACATGGAGAAGATTTATGAATTTCCTCTTAATAAATGATAACTCTATTGCTGTTTCAAAAT TGATGTTTTGAGTCTCCCACATTGATTTTTTTTTTAAACTGAATTCCACATTGGTTAAAAATTGGTAAGATAAACATAAA ATTAGATATTGGCCTACATATATGATGGGTGAGAAGAAAAACATGGTTCATAAAATATGCTTTCTATGTGAATTGTAGTA TATTACAAATAACATATATTAATGATATCTATAAATCCATAGTTCTTAAATGAGACAATTTTTAACATGGTTCATAATTG AACTACTAAATGTTGTTCGATCGGTTCTTTAGATATCTCGTTTTTTTTTTTGGGCTCATGTGTCTCCCCAACAAACTTGT TATTGAACAAAGAGGAAGAAAAATCAAAGTTATGTCTCATTTTACTTTTGGATTGAATAATTTGCTACAAATAGTATTGG TGCTCATTAAAAATGCAAGTTACTAATTTCAGGTAACAAAGCGTGAGAATTCACCACAGAGCCAATGGAAGAATTGGAAT TGGAGATCTTCAGGGGATTTGATGTTAAACGGTGCCTTCTTTACAGCATCAGGGGCAGGTTCTTCTTCAAGCTATGCCAG AGCATCAAGTTTGGCAGCAAAATCATCATCATTGGTCAGTACTATCACAGCATCAGCTGGATCACTTAGCTGCAAAAAGG GCTCCCGCTGCTAG
CDS sequence (LotjaGi6g1v0097000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATTCCAACCCCATTTCTGTTACTCTTGCTATTTCTTTTACCTTCCTTCATTTTCTCTTCCCCAGTTCAAGATCC TGAATTAGTAGTCGAAGAAGTACAAAGGTGTGACCCGAATTGGGCAAAGAATCGTAAGCGCCTAGCAGATTGTGCCATTG GATTTGGCAAGCACGCCATTGGAGGCAGAGATGGTAAAATCTACATAGTCACTGACCCAGGTGATCATGCAGTGAACCCA AAGCCAGGAACATTAAGATACGGTGTGATCCAAGAAGAACCACTATGGATCATCTTCAAACGTGACATGGTGATCAAGCT GAAACAAGAGCTCATGATGAACTCATTCAAAACCATTGACGGTAGAGGAGCAAACGTGCATATAGCTGGTGGACCATGCA TCACTGTGCAATTTGTGACAAACATCATCATCCATGGGATCAACATCCATGACTGCAAAAGAGGAGGGAATACTTATGTG AGAGACTCACCTTCACATTATGGTTGGAGGACACTCTCTGATGGTGATGGGGTTTCTATCTTCGGTGGGAGCCATGTTTG GGTGGACCATTGTTCTCTGTCCAATTGCCGTGATGGATTGATTGATGTCATTCATGGATCTACAGCTATCACTATCTCTA ACAATTACATGACCCACCATAACAAGGTCATGCTTTTGGGCCATAGTGATTCTTTCACTCGTGATAAGACTATGCAGGTC ACCGTTGCCTTCAACCATTTTGGAGAAGGGCTAGTGCAGAGGATGCCAAGATGCAGGTATGGATACTTCCATGTGGTAAA CAATGACTACACGCAATGGGCAATGTATGCCATAGGTGGGAGTGCTTCTCCAACCATCAATAGCCAAGGCAATAGATTTT TTGCTCCTAATGATGGGACCTTCAAAGAGGTAACAAAGCGTGAGAATTCACCACAGAGCCAATGGAAGAATTGGAATTGG AGATCTTCAGGGGATTTGATGTTAAACGGTGCCTTCTTTACAGCATCAGGGGCAGGTTCTTCTTCAAGCTATGCCAGAGC ATCAAGTTTGGCAGCAAAATCATCATCATTGGTCAGTACTATCACAGCATCAGCTGGATCACTTAGCTGCAAAAAGGGCT CCCGCTGCTAG
Protein sequence (LotjaGi6g1v0097000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIPTPFLLLLLFLLPSFIFSSPVQDPELVVEEVQRCDPNWAKNRKRLADCAIGFGKHAIGGRDGKIYIVTDPGDHAVNP KPGTLRYGVIQEEPLWIIFKRDMVIKLKQELMMNSFKTIDGRGANVHIAGGPCITVQFVTNIIIHGINIHDCKRGGNTYV RDSPSHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDVIHGSTAITISNNYMTHHNKVMLLGHSDSFTRDKTMQV TVAFNHFGEGLVQRMPRCRYGYFHVVNNDYTQWAMYAIGGSASPTINSQGNRFFAPNDGTFKEVTKRENSPQSQWKNWNW RSSGDLMLNGAFFTASGAGSSSSYARASSLAAKSSSLVSTITASAGSLSCKKGSRC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 7 | 15 | 9 | - | – | |
| Phobius | 16 | 21 | 6 | - | – | |
| Phobius | 22 | 376 | 355 | - | – | |
| Gene3D | 30 | 369 | 340 | 1.1E-118 | ||
| SUPERFAMILY | 35 | 366 | 332 | 2.04E-99 | ||
| PANTHER | 35 | 376 | 342 | 6.7E-224 | – | |
| PANTHER | 35 | 376 | 342 | 6.7E-224 | – | |
| PRINTS | 51 | 68 | 18 | 1.8E-82 | ||
| PRINTS | 74 | 99 | 26 | 1.8E-82 | ||
| SMART | 102 | 299 | 198 | 1.1E-101 | ||
| Pfam | 108 | 293 | 186 | 1.1E-21 | ||
| PRINTS | 110 | 126 | 17 | 1.8E-82 | ||
| PRINTS | 174 | 195 | 22 | 1.8E-82 | ||
| PRINTS | 254 | 273 | 20 | 1.8E-82 | ||
| PRINTS | 276 | 295 | 20 | 1.8E-82 | ||
| PRINTS | 318 | 342 | 25 | 1.8E-82 | ||
| PRINTS | 347 | 370 | 24 | 1.8E-82 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0097000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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