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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0097000 |
| Transcript ID | LotjaGi6g1v0097000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|D3IZZ2|D3IZZ2_GOSRA Pectate lyase; Found in the gene: LotjaGi6g1v0097000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:21034650..21036903) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAATTCCAACCCCATTTCTGTTACTCTTGCTATTTCTTTTACCTTCCTTCATTTTCTCTTCCCCAGTTCAAGATCC TGAATTAGTAGTCGAAGAAGTACAAAGGTAGACAACAAGAATTTCCTCCATATCATAAAATTCATCCCACATTGACTATT CCTATATAGAGATTTATTAAGCGTTCTCTCTCTAGTCAATATGAGACTTCTCAACAACGCATAATATATGTATATACTTG CATTTCTTAGAGTCATACTAAAATGGTATCAAAATCTGTGTTTTTTTGTTGTTGTTGCAGGAGCATTAATGCCTCAAGGA GAAACTTAGCATTTCTTTCATGTGGGACAGGAAACCCCATTGATGATTGTTGGAGGTGTGACCCGAATTGGGCAAAGAAT CGTAAGCGCCTAGCAGATTGTGCCATTGGATTTGGCAAGCACGCCATTGGAGGCAGAGATGGTAAAATCTACATAGTCAC TGACCCAGGTGATCATGCAGTGAACCCAAAGCCAGGAACATTAAGATACGGTGTGATCCAAGAAGAACCACTATGGATCA TCTTCAAACGTGACATGGTGATCAAGCTGAAACAAGAGCTCATGATGAACTCATTCAAAACCATTGACGGTAGAGGAGCA AACGTGCATATAGCTGGTGGACCATGCATCACTGTGCAATTTGTGACAAACATCATCATCCATGGGATCAACATCCATGA CTGCAAAAGAGGAGGGAATACTTATGTGAGAGACTCACCTTCACATTATGGTTGGAGGACACTCTCTGATGGTGATGGGG TTTCTATCTTCGGTGGGAGCCATGTTTGGGTGGACCATTGTTCTCTGTCCAATTGCCGTGATGGATTGATTGATGTCATT CATGGATCTACAGCTATCACTATCTCTAACAATTACATGACCCACCATAACAAGGTCATGCTTTTGGGCCATAGTGATTC TTTCACTCGTGATAAGACTATGCAGGTCACCGTTGCCTTCAACCATTTTGGAGAAGGGCTAGTGCAGAGGATGCCAAGGT ATGAAGAATTCAAAACCTTCTTTTTGAATAACAAAACAAGATGCTTTAGACTCTGTTTGGATGCAGAGCACGCACTTCTT AAAACTTATTCAGAATTTGTTTGAATGCAGATTAAATAGTACTTATTGGAGTTTATCAAATACTTTTTCTAGCATAAAAG CTCTAATGAATGTTCTTTAGTGTGTATCCAAACAGACTCGATTGTTTTTCCTAATAGATACACTCTAATAAATATTATTT GATCCATATCCTAACGAAATCTGAACCGGATAGCTTTTTATGTATGTCTTTGAATTTAATTTGCATTTCTATTTTATCTC TTAATTTTTGTTTACATCTTTATATGTGTATGCAGATGCAGGTATGGATACTTCCATGTGGTAAACAATGACTACACGCA ATGGGCAATGTATGCCATAGGTGGGAGTGCTTCTCCAACCATCAATAGCCAAGGCAATAGATTTTTTGCTCCTAATGATG GGACCTTCAAAGAGGTTAGACATGGAGAAGATTTATGAATTTCCTCTTAATAAATGATAACTCTATTGCTGTTTCAAAAT TGATGTTTTGAGTCTCCCACATTGATTTTTTTTTTAAACTGAATTCCACATTGGTTAAAAATTGGTAAGATAAACATAAA ATTAGATATTGGCCTACATATATGATGGGTGAGAAGAAAAACATGGTTCATAAAATATGCTTTCTATGTGAATTGTAGTA TATTACAAATAACATATATTAATGATATCTATAAATCCATAGTTCTTAAATGAGACAATTTTTAACATGGTTCATAATTG AACTACTAAATGTTGTTCGATCGGTTCTTTAGATATCTCGTTTTTTTTTTTGGGCTCATGTGTCTCCCCAACAAACTTGT TATTGAACAAAGAGGAAGAAAAATCAAAGTTATGTCTCATTTTACTTTTGGATTGAATAATTTGCTACAAATAGTATTGG TGCTCATTAAAAATGCAAGTTACTAATTTCAGGTAACAAAGCGTGAGAATTCACCACAGAGCCAATGGAAGAATTGGAAT TGGAGATCTTCAGGGGATTTGATGTTAAACGGTGCCTTCTTTACAGCATCAGGGGCAGGTTCTTCTTCAAGCTATGCCAG AGCATCAAGTTTGGCAGCAAAATCATCATCATTGGTCAGTACTATCACAGCATCAGCTGGATCACTTAGCTGCAAAAAGG GCTCCCGCTGCTAG
CDS sequence (LotjaGi6g1v0097000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATTCCAACCCCATTTCTGTTACTCTTGCTATTTCTTTTACCTTCCTTCATTTTCTCTTCCCCAGTTCAAGATCC TGAATTAGTAGTCGAAGAAGTACAAAGAGGAAACCCCATTGATGATTGTTGGAGGTGTGACCCGAATTGGGCAAAGAATC GTAAGCGCCTAGCAGATTGTGCCATTGGATTTGGCAAGCACGCCATTGGAGGCAGAGATGGTAAAATCTACATAGTCACT GACCCAGGTGATCATGCAGTGAACCCAAAGCCAGGAACATTAAGATACGGTGTGATCCAAGAAGAACCACTATGGATCAT CTTCAAACGTGACATGGTGATCAAGCTGAAACAAGAGCTCATGATGAACTCATTCAAAACCATTGACGGTAGAGGAGCAA ACGTGCATATAGCTGGTGGACCATGCATCACTGTGCAATTTGTGACAAACATCATCATCCATGGGATCAACATCCATGAC TGCAAAAGAGGAGGGAATACTTATGTGAGAGACTCACCTTCACATTATGGTTGGAGGACACTCTCTGATGGTGATGGGGT TTCTATCTTCGGTGGGAGCCATGTTTGGGTGGACCAATGCAGGTATGGATACTTCCATGTGGTAAACAATGACTACACGC AATGGGCAATGTATGCCATAGGTGGGAGTGCTTCTCCAACCATCAATAGCCAAGGCAATAGATTTTTTGCTCCTAATGAT GGGACCTTCAAAGAGGTAACAAAGCGTGAGAATTCACCACAGAGCCAATGGAAGAATTGGAATTGGAGATCTTCAGGGGA TTTGATGTTAAACGGTGCCTTCTTTACAGCATCAGGGGCAGGTTCTTCTTCAAGCTATGCCAGAGCATCAAGTTTGGCAG CAAAATCATCATCATTGGTCAGTACTATCACAGCATCAGCTGGATCACTTAGCTGCAAAAAGGGCTCCCGCTGCTAG
Protein sequence (LotjaGi6g1v0097000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIPTPFLLLLLFLLPSFIFSSPVQDPELVVEEVQRGNPIDDCWRCDPNWAKNRKRLADCAIGFGKHAIGGRDGKIYIVT DPGDHAVNPKPGTLRYGVIQEEPLWIIFKRDMVIKLKQELMMNSFKTIDGRGANVHIAGGPCITVQFVTNIIIHGINIHD CKRGGNTYVRDSPSHYGWRTLSDGDGVSIFGGSHVWVDQCRYGYFHVVNNDYTQWAMYAIGGSASPTINSQGNRFFAPND GTFKEVTKRENSPQSQWKNWNWRSSGDLMLNGAFFTASGAGSSSSYARASSLAAKSSSLVSTITASAGSLSCKKGSRC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 3 | 200 | 198 | 1.1E-173 | – | |
| PANTHER | 3 | 200 | 198 | 1.1E-173 | – | |
| Phobius | 7 | 15 | 9 | - | – | |
| Phobius | 16 | 21 | 6 | - | – | |
| Phobius | 22 | 318 | 297 | - | – | |
| Gene3D | 37 | 200 | 164 | 8.9E-57 | ||
| SUPERFAMILY | 58 | 317 | 260 | 7.29E-60 | ||
| PRINTS | 60 | 77 | 18 | 1.2E-36 | ||
| PRINTS | 83 | 108 | 26 | 1.2E-36 | ||
| SMART | 111 | 241 | 131 | 2.2E-23 | ||
| PRINTS | 119 | 135 | 17 | 1.2E-36 | ||
| PRINTS | 183 | 204 | 22 | 1.2E-36 | ||
| PANTHER | 199 | 318 | 120 | 1.1E-173 | – | |
| PANTHER | 199 | 318 | 120 | 1.1E-173 | – | |
| Gene3D | 201 | 311 | 111 | 2.2E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0097000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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