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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0097200 |
| Transcript ID | LotjaGi6g1v0097200.3 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of chromosome condensation (RCC1) family protein; TAIR: AT3G26100.2 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2; TrEMBL-Plants: tr|A0A151U8S5|A0A151U8S5_CAJCA Putative E3 ubiquitin-protein ligase HERC2; Found in the gene: LotjaGi6g1v0097200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:21086370..21093494) extracted from Lotus japonicus Gifu genome v1.2.
AGAAGAGAGGATAAAAGCTAAAATTATTCATTCCATCTCATTCATTCATTCACTCTCAGAAATCAAAGTTAAAAACTCTC TCTCTCTTTGTCTTTCTCTTTCTCTATCTATCTCCTCATCTTGCAAACTCCCCAACACAACACACTCCAACGTTAATCGA TCAGAAACCACCACCACCACCTCTGTCCCTGTTTGTTTGATCCACAAAAACGTAAAAAACCCGGTGTATGCGATTCTCCT CCCACCGATGATGCAGATTCAATTTCAGAAATCACGGGTGTCTATGATACGTAATCACCGTTTCCATCTCTATTTTCATT TGATCTGTCACCGATTACAATCCCACTCGATCATCATCGGAAACTTGTTCATCATGTGATTTTGTTCTGAATTAATTCCC TTTTTTTCTTTTAACTTTTCTGGTTGCGTATTCAGCAAGTGTTTCTCTCTGCTGAATTTGATTACTGATCTGGGAAACTC ACACCCAGAAAAATATAGGGACAAATCATGGAAAAAAAATATACCCTTTGAATAATTGATTGCAAAAAGCTATTTTAATT TGAGTCCTCTGTTTCTGGGTTTTTAGCCATTTTACTGGTTTGATTGTTCATTTTGATTTTGATGAATTGGAAATTTTCTT TCTTTTTTGTTTTAGAATTTAGAATATACCATGGTTTGGGGGAATGGATATATACTATACTTCTGCTCAAAGTTTTCGTC TTTGGATTCACCTTGAAATATTCTGTTTTTCTCATACTTTTTCTTCCTATGGATCATCTAAGTTAAATCAAGCCTTTTAT AAAACGATCGGTGTATGATTTGATTTTCTACTCTGGCTCTGGTTTATTTTATTTCCCATTTGGTAATTGTAAACCTTTTT TTTTTCTTTTTCTTTTTGATCCTCAAGGTTCATGATTCTGTGGTTCTAAATTCATGTCTTATGGTGCTTTTAATCCATAA GATCGTAACAAACTGACTGAGTTAGACGATCATATAATTCAGCTTTTTATTTACTTATTTATTTTTTGTCACATAACGAG TTGTGAGTATGTTTTTCTTTGTAGGTTTGAGGCTTGAGATTTGCTAGTCAATTATATTTTTGAGGTACACACATACACAT TTGCAACTTAGTATAAGAACATGTAAAGTTTTAGATGCTATAATTAGAGAAACAGAGAAATTAATTAAAGTAGTAATAAA TTTGCACATACTTTTCATAATTCTCAGAAGTTTAGATCTTTTCTTCTGCAAAGTTTGGGCACTGCCTAAAGTTAACAGCA GTGCCCATGGATGCCACAACCAGCGGAAACCCAACTCTCCAATACCATAACATCCCTGACCAGCCAATTGCTGCCATTGT TGCCACACAACTTCCACCATTTCAAAGGCAGCAACGCCATTGCTTTGGGGACTCAACTCCAGGAGAGTTTCCCTTGTCTG CTAATCCCTCCATTGTCCTCCATGTCCTCACGGCTTGTAATTTGGATCCTCAAGACCTTGCTAAACTAGAGGCAAGTTCT GTGCCTTATCTGCATTGGATGATGATCCATTGTCCCCGTTTGATGTTCTTTTCCCTGTCCTACCAATCAAATTGTGTCAT GCAGGTGTGTGGTTTTTAAATGACATTACATAATTTGATTGGTGAGCAGGGAAAGGGAACATCAACTGGGATAGAGGGTT TCGGTCCATATGCATTTCAGCTTTGAGATTGTTCTTTAATAGTATCAATGGCGATAATGCTGACTTTGTTTTTGTTGTGC CTGATGCAGGCAACATGCCACTTCTTCAAGCAGCCGGCGAACTTTGCTCCGGATTTCACTTTGTCCTTATCCGAGCTTGC TGCACTAGACATGTGCCAAAAGAGAGCCATCTTTAAGCCAATGAATATGGAAGAGCGAGAAAATTTGAAGCAAAGATGTG GAGGTTCTTGGAAATTGGTTCTGAGGTATTTGCTGGCTGGAGAAGCCTGTTCCAGGAGGGAGAAATCACAGGCAATAGCA GGTCCTGGTCACAGCATTGCTGTGACATCAAAAGGGGCTGTTTACTCATTTGGGTCTAACAGTTCAGGACAACTTGGACA TGGCACCACTGATGAGGAATGGCGACCTCGACCAATAAGGTTGGAACTTCTGGGAACATGTGGATATCCCCTCTATCCTT ACAGCTTATCCTTAAACTTAAGAACCCGTTTGGGTGCAAACCAAAAGCACTTATTGGAGCTTATTTGGTGCTTTTCCTAG TAGATAAGCTCCAACAAGTCCATATCCAAATGGGCTCTAAGGCTAACTGGAATTTGAACTAGATGATTGAACTCAATTAT GTTTCAGGACTTTGCAAGGCATCAGAATTATACAAGCTGCTGCTGGGGCTGGGAGGACAATGTTGATCAGTGATTCTGGG CAGGTTTATGCATTTGGGAAAGACTCTTTTGGGGATGCTGAGTATGGGGTTCAAGGATCTAAAACAGTTATATCTCCACA ATTAGTAGAGTCTTTGAAAAATATATTTGTTGTCCAAGCTGCAATTGGTAATTTTTTCACAGCTGTACTGTCAAGAGAAG GCAGGGTTTATACATTTTCTTGGGGTAGTGATGGCAAACTCGGTCACCACGCCGATCCAAGTGATGTGGAGCCCCATCCT TTATTAGGAGCTCTGGAAGACATACCAGTAGTGCAAATTGCTGCTGGATACTGCTACCTTCTTTGTCTAGCTTGTCAACC CACCGGAATGTGAGCTCTAACTATATCTCCTTTACTTGCGTATATTTGCTTTTGTCAGGACATTTGTTGAGAATCCCTTA TTGACTAGATATATAGGCAAATAAGTGTTTATAAAGGACCATGTCTAAGAGCATTAGAGGTCCATATCCTCAAGCTCGGC ATTCATGGAAGTGTTGATGATACTTATTCATATTTCAATTAGTTTATACATGAAACTTCATTCTTATTGTTATTACTATC TGAATGATTATGATGACAACCTTGAGAACTTACAGGTCAGTGTACTCTGTTGGGTGTGGTTTGGGAGGCAAGCTTGGACA CGGAACAAGAACTGATGAAAAGTTCCCTCGTCTGATCGAACAGTTTCAGATGTTAAACCTTCAACCTATGGTTGTTGCAG CTGGTGCTTGGCATGCTGCTGTGGTAGGGAAGGATGGCCGTGTTTGCACATGGGGATGGGGTCGATATGGTTGCTTGGGG CATGGGAATGAAGATTGTGAATCTGTACCTAAGGTAGTGGAAGCATTGACTAATGTCAAAGCGGTTTATGTTGCAACAGG AGACTACACAACATTTGTAGTGTCTGATGATGGTGATGTGTACTCATTTGGGTGTGGGGAATCTGCTAGTCTCGGGCATA ATGCTGGAAATGATGTACAGGTCTGTTTTGTTTCTGCATTTTTACCTGTTTGATTTGAGTTATATTTGCATGACTGAGTT GAAAAATGATGTGCTTCACCGTTTTCTTTCTATGTAATAAGTTTTATCTTATGAAGCTCACATTGTGTTTTATGTGCTAA CTATTGTTTCGCATCCCAACCTGAATTATAGATGTAGCATTAGCCTGACCATTACCTGAATGAGATGTTATAATACGATA AGAACGTTAGGAGAACCGTACCACAAAGGCGCCGTTGTAGTTGAAAAGCTTATGACCCCCCCCCCCCCCCCCCCCAACAC ACACACACACACACTAGACTCTCATACTTCCAATGCGGGACCCAAAGTCGAATTGGATTCTGACATCAGGCTGGCTGTGC ACTAGCTCCTTTGACCACAGCAAAGCTGGCATCCCTGCCCAAACCGCATTTTTCAGCTGAGAGACATGGTGGAAGACTCT GATACCAAATGATAAGAACCTTGGGAGAACCATATCACCCAAGTTAGGTGGCAAAGATTCTGATACCAATTGATAAGAAC CTTGGGACTTGGGAGAACCATACCTGGTCTAATTCCTTATAAACCTCACTCTAGAATCTCATACTTTTAATGTAGGCCTC GAGCCCTATACCTTGCAATTGGATCCTAGCATAATACTAATGGCTATAGTGCATTCAATTATATGTTAATATTTTTATGT CAGTATTAGTTATACATCTAATAGAAATATTTTATTCAACCATTTGTACATGTACAGGGAAACAGACATGCAAATGTGTT AAGTCCACAGCTTGTGACTTCACTGAAACAGATCAATGAAAGGGTGGTGCAGATTAGCCTGACCAATTCCATATACTGGA ATGCTCACACCTTTGCACTCACTGAATCAGGGAAGCTGTATGCATTTGGGGCTGGAGACAAAGGACAGTTAGGAATTGAG CTTGTTGAAAACCAGACTGAAAGGGGGAATCCAGAACGCGTTGACATTGGTCTTGGTTAACTGTTTCTGCTGCCTTTACT TCTCAATTCTTTACACCAGCATGCATAGCATTTAGTTTTCAAATTCCTTGTATATTTGTAAATATAATCAAAGAATGCAT CGTGAAGGTCCAAGGTAGGTAACACCTAACAAGGGCCTTAGCTTCTTTCTTATGGTTTGTTCATATCATCACTCGTAGGC TTCAACTGGTTGTTTATAGTTGATAAAGGTTCATTTGCATCGTAGTTTGTCTTGAATTGTTTCCACCTATAATTTGCTTA GAAAAAGTTCGTCCCATTTAGCATTCATTCATTATCAAAATCCTCATGGTTTGGTTTATTTACTCTTTGTACCCCGGTGA TCAAGAACTGTGGCAATCTTCTTTTCTTAGGGTAAGGTTAGGTGACAAATCAAGAAATAGAACGTGGGATGCTTTAACAT TCGACATTGAACACTGCAGCCTCTAGTGATAGAAATATTCTTTTGTTAGCTTAGATTACTGATAGTATAGGCTCACTAGG CCTTAGTGTTCTAATGTTGTATTGAACCGGCACTGAAATTGGTTTACACTTTGGTTAAGAGAGAAATTGGGAAGTGAGAA GGTAGGTTGAGAAAAAGTGGTGAGAATGAAAAAGTTTTATGTTTTTGGATATGATAAAAATAGAGAGATGAGAAAGAGTG AAGTGGAGAAAAGAGAAACAATACTTTTTATATTAACAGATAGTTGTATCCCATATGCCACCATGCATGGGCAAAAAAAT TGAATTATTTAAAAAAAAAATACAAAATAGGGGCAAAAAATATTATTTACACAAATGGGTGAACTTGGCCAGTCGGGGGC ATATGTGACTAGAAGGTGGGATTCACCCCACTTAGATAGAAAGTACGTAATGCGGGGAAAAACTTTCATGATTTGTATAT AAATTTATAATTCAAATTTGAAAGATAACTTCATTCGCATTTCTTTAATGTAAGTAGTCAACATCTTATTATATTTTATG TTGCTCTGTTAGGGTTTTGTCTCCCTAGCAGCCTTACCGTCTACGACGTTTCTACAACCGTCGGGGCGGGTGTTGCTGGT TCTATGGCTTCCATTACTCGCGACCTGGACGTTGGAGGAGAGGAGAGGCTTGATGCTCTCGCAAACGAAAAATCGAAGTC TGCATCTTCGAGAGGTGATGGGTCGAATTTTGGTCGGGGGAGTGGCACGATCTGAGATGCTTCTTGTATGTCGATGGCAT CTCTGCTGTTGTTTCTTTAGAGCGGATTCGAGAGCTCTTTTCTTAGCATGGGCGTATCAGGAGGGTGTAAGTGCAGATTC AAAGGAGGCCAAGGAGAAGGTGGCGATTCAGCTTTGTACATATGTCTTCTGTCAACGACGCTGCTGCGACTCGTTCTAAG CTGGACAAAATCCGGATCGACAACGCTTACTTAGCCGTGATAGAGGCCAAGTCTTCTCGTAGGAATGGTATTTCTCCCAG GCTTCCTATCGAAACCTGGCCGCAGGCGTCTCCTTCCTCTGTTGTTTCTCCCAGACTTCCTATTGGAACCATATCGTAGG CTTCTCCTTCCTCTACCGGGGAGTGCCATGGTCGTATGCACCTTGATGAGGTCTTGTTCCCAAAGGTTTTTGGGCAGACC GTGCAGGTTATCGAGGAGCCTTATGGGTCGTTGGTTTCTGTCCATGTTGGGCATGTTATTTCTGTTCCATATACTCCTTC GTCTGTTGGTACCTTGGCTGGTGCAGATCATTCTCAATCTGCCGTGAGGTTTTCGTTAGTCACTTCGCCTAGAGAGGATT TTAAGGTTTACGTTGATGACGATTTGAAGTTTTGCATGAAAGCTGGGTTTGTTTGTGAAAAAGACGAGTTGGATTGGCGT TCATTCGGTGATAATATTCTCTGTGCTATCATTTCTGATTTTGATGCGAGGATGAATGAGTTGAGGGTCACGCCGGATTT AGATTTTGTTGTTCGATCAGAATTTTGGGTCTGTGTTGCAAAATTTGCTCCCCCAAAATTTGGGAGGAATGGAATGGAAC AAAAAACTGGTGAACAATTAAAAATATACAATTACAGATTTATCCTCACTAAATTTCTCTTCCTGCATTCTCTTCGGTCA TTTTTTTTCCCAGTTTGTTCATCTTGGTCCCCAACTAGCCAATTACGTATATTAAGTGTCCTATGACAGTTTTTTTCAAC CAAATTCTCTTCTAAATTGTAATATTACTTGGAATTTTGTAACAGATCTTATTCAATTTGAATTTATATTTAGTTTTATG TTTGAAAAAGAAAACCAAAGTGTTACCGTTAACTGCTACATGAAAATATAAACATACAAATACCGTCTCCATTGATCACA ATACAAACCATCCACAAAACAAAACAAAGCAAAATACAGTATAAGAATTGGACACACAAACAAAATGAAATAATGCCAAC TGTCTTTCTTCTAAATGAATAATCTAAACAAGAATCAAAGTTTGCTGCATCCTCCTTTAAAATTGGTGTCCACCAATAGG CTGGTAGTGTTTTGCGTTGTAGTTCTTAGTCAATTAATAATTTGACTTGTTATATTCTCATTGTGATGCTTGAAGATGGA AGTAAATGTCACTGTCATCACCATTAACAGGATAGCTTCGATGATGGCCTTTATAATAAGGGTTATATTGGAATAAAAAA ATTAAAACTGATTTATCCATCTATTATGCAAACAATAGAGTGGTAGATTTATTCCATTCTATCATAAAGTGTTCGAATAA TGGAA
CDS sequence (LotjaGi6g1v0097200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCCACAACCAGCGGAAACCCAACTCTCCAATACCATAACATCCCTGACCAGCCAATTGCTGCCATTGTTGCCAC ACAACTTCCACCATTTCAAAGGCAGCAACGCCATTGCTTTGGGGACTCAACTCCAGGAGAGTTTCCCTTGTCTGCTAATC CCTCCATTGTCCTCCATGTCCTCACGGCTTGTAATTTGGATCCTCAAGACCTTGCTAAACTAGAGGCAAGTTCTGTGCCT TATCTGCATTGGATGATGATCCATTGTCCCCGTTTGATGTTCTTTTCCCTGTCCTACCAATCAAATTGTGTCATGCAGGC AACATGCCACTTCTTCAAGCAGCCGGCGAACTTTGCTCCGGATTTCACTTTGTCCTTATCCGAGCTTGCTGCACTAGACA TGTGCCAAAAGAGAGCCATCTTTAAGCCAATGAATATGGAAGAGCGAGAAAATTTGAAGCAAAGATGTGGAGGTTCTTGG AAATTGGTTCTGAGGTATTTGCTGGCTGGAGAAGCCTGTTCCAGGAGGGAGAAATCACAGGCAATAGCAGGTCCTGGTCA CAGCATTGCTGTGACATCAAAAGGGGCTGTTTACTCATTTGGGTCTAACAGTTCAGGACAACTTGGACATGGCACCACTG ATGAGGAATGGCGACCTCGACCAATAAGGACTTTGCAAGGCATCAGAATTATACAAGCTGCTGCTGGGGCTGGGAGGACA ATGTTGATCAGTGATTCTGGGCAGGTTTATGCATTTGGGAAAGACTCTTTTGGGGATGCTGAGTATGGGGTTCAAGGATC TAAAACAGTTATATCTCCACAATTAGTAGAGTCTTTGAAAAATATATTTGTTGTCCAAGCTGCAATTGGTAATTTTTTCA CAGCTGTACTGTCAAGAGAAGGCAGGGTTTATACATTTTCTTGGGGTAGTGATGGCAAACTCGGTCACCACGCCGATCCA AGTGATGTGGAGCCCCATCCTTTATTAGGAGCTCTGGAAGACATACCAGTAGTGCAAATTGCTGCTGGATACTGCTACCT TCTTTGTCTAGCTTGTCAACCCACCGGAATGTCAGTGTACTCTGTTGGGTGTGGTTTGGGAGGCAAGCTTGGACACGGAA CAAGAACTGATGAAAAGTTCCCTCGTCTGATCGAACAGTTTCAGATGTTAAACCTTCAACCTATGGTTGTTGCAGCTGGT GCTTGGCATGCTGCTGTGGTAGGGAAGGATGGCCGTGTTTGCACATGGGGATGGGGTCGATATGGTTGCTTGGGGCATGG GAATGAAGATTGTGAATCTGTACCTAAGGTAGTGGAAGCATTGACTAATGTCAAAGCGGTTTATGTTGCAACAGGAGACT ACACAACATTTGTAGTGTCTGATGATGGTGATGTGTACTCATTTGGGTGTGGGGAATCTGCTAGTCTCGGGCATAATGCT GGAAATGATGTACAGGGAAACAGACATGCAAATGTGTTAAGTCCACAGCTTGTGACTTCACTGAAACAGATCAATGAAAG GGTGGTGCAGATTAGCCTGACCAATTCCATATACTGGAATGCTCACACCTTTGCACTCACTGAATCAGGGAAGCTGTATG CATTTGGGGCTGGAGACAAAGGACAGTTAGGAATTGAGCTTGTTGAAAACCAGACTGAAAGGGGGAATCCAGAACGCGTT GACATTGGTCTTGGTTAA
Protein sequence (LotjaGi6g1v0097200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDATTSGNPTLQYHNIPDQPIAAIVATQLPPFQRQQRHCFGDSTPGEFPLSANPSIVLHVLTACNLDPQDLAKLEASSVP YLHWMMIHCPRLMFFSLSYQSNCVMQATCHFFKQPANFAPDFTLSLSELAALDMCQKRAIFKPMNMEERENLKQRCGGSW KLVLRYLLAGEACSRREKSQAIAGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLQGIRIIQAAAGAGRT MLISDSGQVYAFGKDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGSDGKLGHHADP SDVEPHPLLGALEDIPVVQIAAGYCYLLCLACQPTGMSVYSVGCGLGGKLGHGTRTDEKFPRLIEQFQMLNLQPMVVAAG AWHAAVVGKDGRVCTWGWGRYGCLGHGNEDCESVPKVVEALTNVKAVYVATGDYTTFVVSDDGDVYSFGCGESASLGHNA GNDVQGNRHANVLSPQLVTSLKQINERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVENQTERGNPERV DIGLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 78 | 78 | 0.0 | – | |
| PANTHER | 1 | 78 | 78 | 0.0 | – | |
| PANTHER | 97 | 564 | 468 | 0.0 | – | |
| PANTHER | 97 | 564 | 468 | 0.0 | – | |
| Gene3D | 168 | 352 | 185 | 2.9E-47 | ||
| PRINTS | 178 | 191 | 14 | 1.5E-15 | ||
| SUPERFAMILY | 179 | 480 | 302 | 1.24E-69 | ||
| Pfam | 194 | 243 | 50 | 1.9E-11 | ||
| ProSiteProfiles | 195 | 246 | 52 | 14.705 | ||
| PRINTS | 197 | 213 | 17 | 1.5E-15 | ||
| PRINTS | 247 | 263 | 17 | 1.5E-15 | ||
| ProSiteProfiles | 247 | 300 | 54 | 11.268 | ||
| PRINTS | 287 | 303 | 17 | 1.5E-15 | ||
| ProSiteProfiles | 301 | 353 | 53 | 10.404 | ||
| PRINTS | 303 | 317 | 15 | 1.5E-15 | ||
| Gene3D | 353 | 564 | 212 | 4.3E-50 | ||
| ProSiteProfiles | 357 | 410 | 54 | 10.986 | ||
| Pfam | 359 | 407 | 49 | 1.1E-4 | ||
| ProSitePatterns | 397 | 407 | 11 | - | ||
| PRINTS | 400 | 418 | 19 | 1.5E-15 | ||
| Pfam | 410 | 459 | 50 | 3.7E-13 | ||
| ProSiteProfiles | 411 | 462 | 52 | 13.539 | ||
| PRINTS | 458 | 479 | 22 | 1.5E-15 | ||
| Pfam | 462 | 512 | 51 | 1.9E-6 | ||
| ProSiteProfiles | 463 | 529 | 67 | 9.881 | ||
| ProSiteProfiles | 530 | 565 | 36 | 9.459 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0097200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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