Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi6g1v0097200 |
Transcript ID | LotjaGi6g1v0097200.5 |
Related isoforms 7 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Regulator of chromosome condensation (RCC1) family protein; TAIR: AT3G26100.2 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2; TrEMBL-Plants: tr|I1MYL4|I1MYL4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0097200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:21088443..21093469) extracted from Lotus japonicus Gifu genome v1.2.
ATTCATTCCATCTCATTCATTCATTCACTCTCAGAAATCAAAGTTAAAAACTCTCTCTCTCTTTGTCTTTCTCTTTCTCT ATCTATCTCCTCATCTTGCAAACTCCCCAACACAACACACTCCAACGTTAATCGATCAGAAACCACCACCACCACCTCTG TCCCTGTTTGTTTGATCCACAAAAACGTAAAAAACCCGGTGTATGCGATTCTCCTCCCACCGATGATGCAGATTCAATTT CAGAAATCACGGGTGTCTATGATACGTAATCACCGTTTCCATCTCTATTTTCATTTGATCTGTCACCGATTACAATCCCA CTCGATCATCATCGGAAACTTGTTCATCATGTGATTTTGTTCTGAATTAATTCCCTTTTTTTCTTTTAACTTTTCTGGTT GCGTATTCAGCAAGTGTTTCTCTCTGCTGAATTTGATTACTGATCTGGGAAACTCACACCCAGAAAAATATAGGGACAAA TCATGGAAAAAAAATATACCCTTTGAATAATTGATTGCAAAAAGCTATTTTAATTTGAGTCCTCTGTTTCTGGGTTTTTA GCCATTTTACTGGTTTGATTGTTCATTTTGATTTTGATGAATTGGAAATTTTCTTTCTTTTTTGTTTTAGAATTTAGAAT ATACCATGGTTTGGGGGAATGGATATATACTATACTTCTGCTCAAAGTTTTCGTCTTTGGATTCACCTTGAAATATTCTG TTTTTCTCATACTTTTTCTTCCTATGGATCATCTAAGTTAAATCAAGCCTTTTATAAAACGATCGGTGTATGATTTGATT TTCTACTCTGGCTCTGGTTTATTTTATTTCCCATTTGGTAATTGTAAACCTTTTTTTTTTCTTTTTCTTTTTGATCCTCA AGGTTCATGATTCTGTGGTTCTAAATTCATGTCTTATGGTGCTTTTAATCCATAAGATCGTAACAAACTGACTGAGTTAG ACGATCATATAATTCAGCTTTTTATTTACTTATTTATTTTTTGTCACATAACGAGTTGTGAGTATGTTTTTCTTTGTAGG TTTGAGGCTTGAGATTTGCTAGTCAATTATATTTTTGAGGTACACACATACACATTTGCAACTTAGTATAAGAACATGTA AAGTTTTAGATGCTATAATTAGAGAAACAGAGAAATTAATTAAAGTAGTAATAAATTTGCACATACTTTTCATAATTCTC AGAAGTTTAGATCTTTTCTTCTGCAAAGTTTGGGCACTGCCTAAAGTTAACAGCAGTGCCCATGGATGCCACAACCAGCG GAAACCCAACTCTCCAATACCATAACATCCCTGACCAGCCAATTGCTGCCATTGTTGCCACACAACTTCCACCATTTCAA AGGCAGCAACGCCATTGCTTTGGGGACTCAACTCCAGGAGAGTTTCCCTTGTCTGCTAATCCCTCCATTGTCCTCCATGT CCTCACGGCTTGTAATTTGGATCCTCAAGACCTTGCTAAACTAGAGGCAAGTTCTGTGCCTTATCTGCATTGGATGATGA TCCATTGTCCCCGTTTGATGTTCTTTTCCCTGTCCTACCAATCAAATTGTGTCATGCAGGTGTGTGGTTTTTAAATGACA TTACATAATTTGATTGGTGAGCAGGGAAAGGGAACATCAACTGGGATAGAGGGTTTCGGTCCATATGCATTTCAGCTTTG AGATTGTTCTTTAATAGTATCAATGGCGATAATGCTGACTTTGTTTTTGTTGTGCCTGATGCAGGCAACATGCCACTTCT TCAAGCAGCCGGCGAACTTTGCTCCGGATTTCACTTTGTCCTTATCCGAGCTTGCTGCACTAGACATGTGCCAAAAGAGA GCCATCTTTAAGCCAATGAATATGGAAGAGCGAGAAAATTTGAAGCAAAGATGTGGAGGTTCTTGGAAATTGGTTCTGAG GTATTTGCTGGCTGGAGAAGCCTGTTCCAGGAGGGAGAAATCACAGGCAATAGCAGGTCCTGGTCACAGCATTGCTGTGA CATCAAAAGGGGCTGTTTACTCATTTGGGTCTAACAGTTCAGGACAACTTGGACATGGCACCACTGATGAGGAATGGCGA CCTCGACCAATAAGGTTGGAACTTCTGGGAACATGTGGATATCCCCTCTATCCTTACAGCTTATCCTTAAACTTAAGAAC CCGTTTGGGTGCAAACCAAAAGCACTTATTGGAGCTTATTTGGTGCTTTTCCTAGTAGATAAGCTCCAACAAGTCCATAT CCAAATGGGCTCTAAGGCTAACTGGAATTTGAACTAGATGATTGAACTCAATTATGTTTCAGGACTTTGCAAGGCATCAG AATTATACAAGCTGCTGCTGGGGCTGGGAGGACAATGTTGATCAGTGATTCTGGGCAGGTTTATGCATTTGGGAAAGACT CTTTTGGGGATGCTGAGTATGGGGTTCAAGGATCTAAAACAGTTATATCTCCACAATTAGTAGAGTCTTTGAAAAATATA TTTGTTGTCCAAGCTGCAATTGGTAATTTTTTCACAGCTGTACTGTCAAGAGAAGGCAGGGTTTATACATTTTCTTGGGG TAGTGATGGCAAACTCGGTCACCACGCCGATCCAAGTGATGTGGAGCCCCATCCTTTATTAGGAGCTCTGGAAGACATAC CAGTAGTGCAAATTGCTGCTGGATACTGCTACCTTCTTTGTCTAGCTTGTCAACCCACCGGAATGTGAGCTCTAACTATA TCTCCTTTACTTGCGTATATTTGCTTTTGTCAGGACATTTGTTGAGAATCCCTTATTGACTAGATATATAGGCAAATAAG TGTTTATAAAGGACCATGTCTAAGAGCATTAGAGGTCCATATCCTCAAGCTCGGCATTCATGGAAGTGTTGATGATACTT ATTCATATTTCAATTAGTTTATACATGAAACTTCATTCTTATTGTTATTACTATCTGAATGATTATGATGACAACCTTGA GAACTTACAGGTCAGTGTACTCTGTTGGGTGTGGTTTGGGAGGCAAGCTTGGACACGGAACAAGAACTGATGAAAAGTTC CCTCGTCTGATCGAACAGTTTCAGATGTTAAACCTTCAACCTATGGTTGTTGCAGCTGGTGCTTGGCATGCTGCTGTGGT AGGGAAGGATGGCCGTGTTTGCACATGGGGATGGGGTCGATATGGTTGCTTGGGGCATGGGAATGAAGATTGTGAATCTG TACCTAAGGTAGTGGAAGCATTGACTAATGTCAAAGCGGTTTATGTTGCAACAGGAGACTACACAACATTTGTAGTGTCT GATGATGGTGATGTGTACTCATTTGGGTGTGGGGAATCTGCTAGTCTCGGGCATAATGCTGGAAATGATGTACAGGTCTG TTTTGTTTCTGCATTTTTACCTGTTTGATTTGAGTTATATTTGCATGACTGAGTTGAAAAATGATGTGCTTCACCGTTTT CTTTCTATGTAATAAGTTTTATCTTATGAAGCTCACATTGTGTTTTATGTGCTAACTATTGTTTCGCATCCCAACCTGAA TTATAGATGTAGCATTAGCCTGACCATTACCTGAATGAGATGTTATAATACGATAAGAACGTTAGGAGAACCGTACCACA AAGGCGCCGTTGTAGTTGAAAAGCTTATGACCCCCCCCCCCCCCCCCCCCAACACACACACACACACACTAGACTCTCAT ACTTCCAATGCGGGACCCAAAGTCGAATTGGATTCTGACATCAGGCTGGCTGTGCACTAGCTCCTTTGACCACAGCAAAG CTGGCATCCCTGCCCAAACCGCATTTTTCAGCTGAGAGACATGGTGGAAGACTCTGATACCAAATGATAAGAACCTTGGG AGAACCATATCACCCAAGTTAGGTGGCAAAGATTCTGATACCAATTGATAAGAACCTTGGGACTTGGGAGAACCATACCT GGTCTAATTCCTTATAAACCTCACTCTAGAATCTCATACTTTTAATGTAGGCCTCGAGCCCTATACCTTGCAATTGGATC CTAGCATAATACTAATGGCTATAGTGCATTCAATTATATGTTAATATTTTTATGTCAGTATTAGTTATACATCTAATAGA AATATTTTATTCAACCATTTGTACATGTACAGGGAAACAGACATGCAAATGTGTTAAGTCCACAGCTTGTGACTTCACTG AAACAGATCAATGAAAGGGTGGTGCAGATTAGCCTGACCAATTCCATATACTGGAATGCTCACACCTTTGCACTCACTGA ATCAGGGAAGCTGTATGCATTTGGGGCTGGAGACAAAGGACAGTTAGGAATTGAGCTTGTTGAAAACCAGACTGAAAGGG GGAATCCAGAACGCGTTGACATTGGTCTTGGTTAACTGTTTCTGCTGCCTTTACTTCTCAATTCTTTACACCAGCATGCA TAGCATTTAGTTTTCAAATTCCTTGTATATTTGTAAATATAATCAAAGAATGCATCGTGAAGGTCCAAGGTAGGTAACAC CTAACAAGGGCCTTAGCTTCTTTCTTATGGTTTGTTCATATCATCACTCGTAGGCTTCAACTGGTTGTTTATAGTTGATA AAGGTTCATTTGCATCGTAGTTTGTCTTGAATTGTTTCCACCTATAATTTGCTTAGAAAAAGTTCGTCCCATTTAGCATT CATTCATTATCAAAATCCTCATGGTTTGGTTTATTTACTCTTTGTACCCCGGTGATCAAGAACTGTGGCAATCTTCTTTT CTTAGGGTAAGGTTAGGTGACAAATCAAGAAATAGAACGTGGGATGCTTTAACATTCGACATTGAACACTGCAGCCTCTA GTGATAGAAATATTCTTTTGTTAGCTTAGATTACTGATAGTATAGGCTCACTAGGCCTTAGTGTTCTAATGTTGTATTGA ACCGGCACTGAAATTGGTTTACACTTTGGTTAAGAGAGAAATTGGGAAGTGAGAAGGTAGGTTGAGAAAAAGTGGTGAGA ATGAAAAAGTTTTATGTTTTTGGATATGATAAAAATAGAGAGATGAGAAAGAGTGAAGTGGAGAAAA
CDS sequence (LotjaGi6g1v0097200.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCCACAACCAGCGGAAACCCAACTCTCCAATACCATAACATCCCTGACCAGCCAATTGCTGCCATTGTTGCCAC ACAACTTCCACCATTTCAAAGGCAGCAACGCCATTGCTTTGGGGACTCAACTCCAGGAGAGTTTCCCTTGTCTGCTAATC CCTCCATTGTCCTCCATGTCCTCACGGCTTGTAATTTGGATCCTCAAGACCTTGCTAAACTAGAGGCAACATGCCACTTC TTCAAGCAGCCGGCGAACTTTGCTCCGGATTTCACTTTGTCCTTATCCGAGCTTGCTGCACTAGACATGTGCCAAAAGAG AGCCATCTTTAAGCCAATGAATATGGAAGAGCGAGAAAATTTGAAGCAAAGATGTGGAGGTTCTTGGAAATTGGTTCTGA GGTATTTGCTGGCTGGAGAAGCCTGTTCCAGGAGGGAGAAATCACAGGCAATAGCAGGTCCTGGTCACAGCATTGCTGTG ACATCAAAAGGGGCTGTTTACTCATTTGGGTCTAACAGTTCAGGACAACTTGGACATGGCACCACTGATGAGGAATGGCG ACCTCGACCAATAAGGACTTTGCAAGGCATCAGAATTATACAAGCTGCTGCTGGGGCTGGGAGGACAATGTTGATCAGTG ATTCTGGGCAGGTTTATGCATTTGGGAAAGACTCTTTTGGGGATGCTGAGTATGGGGTTCAAGGATCTAAAACAGTTATA TCTCCACAATTAGTAGAGTCTTTGAAAAATATATTTGTTGTCCAAGCTGCAATTGGTAATTTTTTCACAGCTGTACTGTC AAGAGAAGGCAGGGTTTATACATTTTCTTGGGGTAGTGATGGCAAACTCGGTCACCACGCCGATCCAAGTGATGTGGAGC CCCATCCTTTATTAGGAGCTCTGGAAGACATACCAGTAGTGCAAATTGCTGCTGGATACTGCTACCTTCTTTGTCTAGCT TGTCAACCCACCGGAATGTCAGTGTACTCTGTTGGGTGTGGTTTGGGAGGCAAGCTTGGACACGGAACAAGAACTGATGA AAAGTTCCCTCGTCTGATCGAACAGTTTCAGATGTTAAACCTTCAACCTATGGTTGTTGCAGCTGGTGCTTGGCATGCTG CTGTGGTAGGGAAGGATGGCCGTGTTTGCACATGGGGATGGGGTCGATATGGTTGCTTGGGGCATGGGAATGAAGATTGT GAATCTGTACCTAAGGTAGTGGAAGCATTGACTAATGTCAAAGCGGTTTATGTTGCAACAGGAGACTACACAACATTTGT AGTGTCTGATGATGGTGATGTGTACTCATTTGGGTGTGGGGAATCTGCTAGTCTCGGGCATAATGCTGGAAATGATGTAC AGGGAAACAGACATGCAAATGTGTTAAGTCCACAGCTTGTGACTTCACTGAAACAGATCAATGAAAGGGTGGTGCAGATT AGCCTGACCAATTCCATATACTGGAATGCTCACACCTTTGCACTCACTGAATCAGGGAAGCTGTATGCATTTGGGGCTGG AGACAAAGGACAGTTAGGAATTGAGCTTGTTGAAAACCAGACTGAAAGGGGGAATCCAGAACGCGTTGACATTGGTCTTG GTTAA
Protein sequence (LotjaGi6g1v0097200.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDATTSGNPTLQYHNIPDQPIAAIVATQLPPFQRQQRHCFGDSTPGEFPLSANPSIVLHVLTACNLDPQDLAKLEATCHF FKQPANFAPDFTLSLSELAALDMCQKRAIFKPMNMEERENLKQRCGGSWKLVLRYLLAGEACSRREKSQAIAGPGHSIAV TSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLQGIRIIQAAAGAGRTMLISDSGQVYAFGKDSFGDAEYGVQGSKTVI SPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGSDGKLGHHADPSDVEPHPLLGALEDIPVVQIAAGYCYLLCLA CQPTGMSVYSVGCGLGGKLGHGTRTDEKFPRLIEQFQMLNLQPMVVAAGAWHAAVVGKDGRVCTWGWGRYGCLGHGNEDC ESVPKVVEALTNVKAVYVATGDYTTFVVSDDGDVYSFGCGESASLGHNAGNDVQGNRHANVLSPQLVTSLKQINERVVQI SLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVENQTERGNPERVDIGLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 533 | 533 | 0.0 | – | |
PANTHER | 1 | 533 | 533 | 0.0 | – | |
Gene3D | 137 | 321 | 185 | 2.6E-47 | ||
PRINTS | 147 | 160 | 14 | 1.0E-15 | ||
SUPERFAMILY | 148 | 448 | 301 | 1.37E-69 | ||
Pfam | 163 | 212 | 50 | 1.8E-11 | ||
ProSiteProfiles | 164 | 215 | 52 | 14.705 | ||
PRINTS | 166 | 182 | 17 | 1.0E-15 | ||
ProSiteProfiles | 216 | 269 | 54 | 11.268 | ||
PRINTS | 216 | 232 | 17 | 1.0E-15 | ||
PRINTS | 256 | 272 | 17 | 1.0E-15 | ||
ProSiteProfiles | 270 | 322 | 53 | 10.404 | ||
PRINTS | 272 | 286 | 15 | 1.0E-15 | ||
Gene3D | 322 | 533 | 212 | 3.9E-50 | ||
ProSiteProfiles | 326 | 379 | 54 | 10.986 | ||
Pfam | 328 | 376 | 49 | 1.0E-4 | ||
ProSitePatterns | 366 | 376 | 11 | - | ||
PRINTS | 369 | 387 | 19 | 1.0E-15 | ||
Pfam | 379 | 428 | 50 | 3.5E-13 | ||
ProSiteProfiles | 380 | 431 | 52 | 13.539 | ||
PRINTS | 427 | 448 | 22 | 1.0E-15 | ||
Pfam | 431 | 481 | 51 | 1.8E-6 | ||
ProSiteProfiles | 432 | 498 | 67 | 9.881 | ||
ProSiteProfiles | 499 | 534 | 36 | 9.459 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0097200.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…