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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0097200 |
| Transcript ID | LotjaGi6g1v0097200.6 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of chromosome condensation (RCC1) family protein; TAIR: AT3G26100.2 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2; TrEMBL-Plants: tr|I1MYL4|I1MYL4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0097200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:21089115..21092208) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATGCCACAACCAGCGGAAACCCAACTCTCCAATACCATAACATCCCTGACCAGCCAATTGCTGCCATTGTTGCCAC ACAACTTCCACCATTTCAAAGGCAGCAACGCCATTGCTTTGGGGACTCAACTCCAGGAGAGTTTCCCTTGTCTGCTAATC CCTCCATTGTCCTCCATGTCCTCACGGCTTGTAATTTGGATCCTCAAGACCTTGCTAAACTAGAGGCAAGTTCTGTGCCT TATCTGCATTGGATGATGATCCATTGTCCCCGTTTGATGTTCTTTTCCCTGTCCTACCAATCAAATTGTGTCATGCAGGT GTGTGGTTTTTAAATGACATTACATAATTTGATTGGTGAGCAGGGAAAGGGAACATCAACTGGGATAGAGGGTTTCGGTC CATATGCATTTCAGCTTTGAGATTGTTCTTTAATAGTATCAATGGCGATAATGCTGACTTTGTTTTTGTTGTGCCTGATG CAGGCAACATGCCACTTCTTCAAGCAGCCGGCGAACTTTGCTCCGGATTTCACTTTGTCCTTATCCGAGCTTGCTGCACT AGACATGTGCCAAAAGAGAGCCATCTTTAAGCCAATGAATATGGAAGAGCGAGAAAATTTGAAGCAAAGATGTGGAGGTT CTTGGAAATTGGTTCTGAGGTATTTGCTGGCTGGAGAAGCCTGTTCCAGGAGGGAGAAATCACAGGCAATAGCAGGTCCT GGTCACAGCATTGCTGTGACATCAAAAGGGGCTGTTTACTCATTTGGGTCTAACAGTTCAGGACAACTTGGACATGGCAC CACTGATGAGGAATGGCGACCTCGACCAATAAGGTTGGAACTTCTGGGAACATGTGGATATCCCCTCTATCCTTACAGCT TATCCTTAAACTTAAGAACCCGTTTGGGTGCAAACCAAAAGCACTTATTGGAGCTTATTTGGTGCTTTTCCTAGTAGATA AGCTCCAACAAGTCCATATCCAAATGGGCTCTAAGGCTAACTGGAATTTGAACTAGATGATTGAACTCAATTATGTTTCA GGACTTTGCAAGGCATCAGAATTATACAAGCTGCTGCTGGGGCTGGGAGGACAATGTTGATCAGTGATTCTGGGCAGGTT TATGCATTTGGGAAAGACTCTTTTGGGGATGCTGAGTATGGGGTTCAAGGATCTAAAACAGTTATATCTCCACAATTAGT AGAGTCTTTGAAAAATATATTTGTTGTCCAAGCTGCAATTGGTAATTTTTTCACAGCTGTACTGTCAAGAGAAGGCAGGG TTTATACATTTTCTTGGGGTAGTGATGGCAAACTCGGTCACCACGCCGATCCAAGTGATGTGGAGCCCCATCCTTTATTA GGAGCTCTGGAAGACATACCAGTAGTGCAAATTGCTGCTGGATACTGCTACCTTCTTTGTCTAGCTTGTCAACCCACCGG AATGTGAGCTCTAACTATATCTCCTTTACTTGCGTATATTTGCTTTTGTCAGGACATTTGTTGAGAATCCCTTATTGACT AGATATATAGGCAAATAAGTGTTTATAAAGGACCATGTCTAAGAGCATTAGAGGTCCATATCCTCAAGCTCGGCATTCAT GGAAGTGTTGATGATACTTATTCATATTTCAATTAGTTTATACATGAAACTTCATTCTTATTGTTATTACTATCTGAATG ATTATGATGACAACCTTGAGAACTTACAGGTCAGTGTACTCTGTTGGGTGTGGTTTGGGAGGCAAGCTTGGACACGGAAC AAGAACTGATGAAAAGTTCCCTCGTCTGATCGAACAGTTTCAGATGTTAAACCTTCAACCTATGGTTGTTGCAGCTGGTG CTTGGCATGCTGCTGTGGTAGGGAAGGATGGCCGTGTTTGCACATGGGGATGGGGTCGATATGGTTGCTTGGGGCATGGG AATGAAGATTGTGAATCTGTACCTAAGGTAGTGGAAGCATTGACTAATGTCAAAGCGGTTTATGTTGCAACAGGAGACTA CACAACATTTGTAGTGTCTGATGATGGTGATGTGTACTCATTTGGGTGTGGGGAATCTGCTAGTCTCGGGCATAATGCTG GAAATGATGTACAGGTCTGTTTTGTTTCTGCATTTTTACCTGTTTGATTTGAGTTATATTTGCATGACTGAGTTGAAAAA TGATGTGCTTCACCGTTTTCTTTCTATGTAATAAGTTTTATCTTATGAAGCTCACATTGTGTTTTATGTGCTAACTATTG TTTCGCATCCCAACCTGAATTATAGATGTAGCATTAGCCTGACCATTACCTGAATGAGATGTTATAATACGATAAGAACG TTAGGAGAACCGTACCACAAAGGCGCCGTTGTAGTTGAAAAGCTTATGACCCCCCCCCCCCCCCCCCCCAACACACACAC ACACACACTAGACTCTCATACTTCCAATGCGGGACCCAAAGTCGAATTGGATTCTGACATCAGGCTGGCTGTGCACTAGC TCCTTTGACCACAGCAAAGCTGGCATCCCTGCCCAAACCGCATTTTTCAGCTGAGAGACATGGTGGAAGACTCTGATACC AAATGATAAGAACCTTGGGAGAACCATATCACCCAAGTTAGGTGGCAAAGATTCTGATACCAATTGATAAGAACCTTGGG ACTTGGGAGAACCATACCTGGTCTAATTCCTTATAAACCTCACTCTAGAATCTCATACTTTTAATGTAGGCCTCGAGCCC TATACCTTGCAATTGGATCCTAGCATAATACTAATGGCTATAGTGCATTCAATTATATGTTAATATTTTTATGTCAGTAT TAGTTATACATCTAATAGAAATATTTTATTCAACCATTTGTACATGTACAGGGAAACAGACATGCAAATGTGTTAAGTCC ACAGCTTGTGACTTCACTGAAACAGATCAATGAAAGGGTGGTGCAGATTAGCCTGACCAATTCCATATACTGGAATGCTC ACACCTTTGCACTCACTGAATCAGGGAAGCTGTATGCATTTGGGGCTGGAGACAAAGGACAGTTAGGAATTGAGCTTGTT GAAAACCAGACTGAAAGGGGGAATCCAGAACGCGTTGACATTGGTCTTGGTTAA
CDS sequence (LotjaGi6g1v0097200.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCCACAACCAGCGGAAACCCAACTCTCCAATACCATAACATCCCTGACCAGCCAATTGCTGCCATTGTTGCCAC ACAACTTCCACCATTTCAAAGGCAGCAACGCCATTGCTTTGGGGACTCAACTCCAGGAGAGTTTCCCTTGTCTGCTAATC CCTCCATTGTCCTCCATGCAACATGCCACTTCTTCAAGCAGCCGGCGAACTTTGCTCCGGATTTCACTTTGTCCTTATCC GAGCTTGCTGCACTAGACATGTGCCAAAAGAGAGCCATCTTTAAGCCAATGAATATGGAAGAGCGAGAAAATTTGAAGCA AAGATGTGGAGGTTCTTGGAAATTGGTTCTGAGGTATTTGCTGGCTGGAGAAGCCTGTTCCAGGAGGGAGAAATCACAGG CAATAGCAGGTCCTGGTCACAGCATTGCTGTGACATCAAAAGGGGCTGTTTACTCATTTGGGTCTAACAGTTCAGGACAA CTTGGACATGGCACCACTGATGAGGAATGGCGACCTCGACCAATAAGGACTTTGCAAGGCATCAGAATTATACAAGCTGC TGCTGGGGCTGGGAGGACAATGTTGATCAGTGATTCTGGGCAGGTTTATGCATTTGGGAAAGACTCTTTTGGGGATGCTG AGTATGGGGTTCAAGGATCTAAAACAGTTATATCTCCACAATTAGTAGAGTCTTTGAAAAATATATTTGTTGTCCAAGCT GCAATTGGTAATTTTTTCACAGCTGTACTGTCAAGAGAAGGCAGGGTTTATACATTTTCTTGGGGTAGTGATGGCAAACT CGGTCACCACGCCGATCCAAGTGATGTGGAGCCCCATCCTTTATTAGGAGCTCTGGAAGACATACCAGTAGTGCAAATTG CTGCTGGATACTGCTACCTTCTTTGTCTAGCTTGTCAACCCACCGGAATGTCAGTGTACTCTGTTGGGTGTGGTTTGGGA GGCAAGCTTGGACACGGAACAAGAACTGATGAAAAGTTCCCTCGTCTGATCGAACAGTTTCAGATGTTAAACCTTCAACC TATGGTTGTTGCAGCTGGTGCTTGGCATGCTGCTGTGGTAGGGAAGGATGGCCGTGTTTGCACATGGGGATGGGGTCGAT ATGGTTGCTTGGGGCATGGGAATGAAGATTGTGAATCTGTACCTAAGGTAGTGGAAGCATTGACTAATGTCAAAGCGGTT TATGTTGCAACAGGAGACTACACAACATTTGTAGTGTCTGATGATGGTGATGTGTACTCATTTGGGTGTGGGGAATCTGC TAGTCTCGGGCATAATGCTGGAAATGATGTACAGGGAAACAGACATGCAAATGTGTTAAGTCCACAGCTTGTGACTTCAC TGAAACAGATCAATGAAAGGGTGGTGCAGATTAGCCTGACCAATTCCATATACTGGAATGCTCACACCTTTGCACTCACT GAATCAGGGAAGCTGTATGCATTTGGGGCTGGAGACAAAGGACAGTTAGGAATTGAGCTTGTTGAAAACCAGACTGAAAG GGGGAATCCAGAACGCGTTGACATTGGTCTTGGTTAA
Protein sequence (LotjaGi6g1v0097200.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDATTSGNPTLQYHNIPDQPIAAIVATQLPPFQRQQRHCFGDSTPGEFPLSANPSIVLHATCHFFKQPANFAPDFTLSLS ELAALDMCQKRAIFKPMNMEERENLKQRCGGSWKLVLRYLLAGEACSRREKSQAIAGPGHSIAVTSKGAVYSFGSNSSGQ LGHGTTDEEWRPRPIRTLQGIRIIQAAAGAGRTMLISDSGQVYAFGKDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQA AIGNFFTAVLSREGRVYTFSWGSDGKLGHHADPSDVEPHPLLGALEDIPVVQIAAGYCYLLCLACQPTGMSVYSVGCGLG GKLGHGTRTDEKFPRLIEQFQMLNLQPMVVAAGAWHAAVVGKDGRVCTWGWGRYGCLGHGNEDCESVPKVVEALTNVKAV YVATGDYTTFVVSDDGDVYSFGCGESASLGHNAGNDVQGNRHANVLSPQLVTSLKQINERVVQISLTNSIYWNAHTFALT ESGKLYAFGAGDKGQLGIELVENQTERGNPERVDIGLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 517 | 517 | 0.0 | – | |
| PANTHER | 1 | 517 | 517 | 0.0 | – | |
| Gene3D | 121 | 305 | 185 | 2.4E-47 | ||
| PRINTS | 131 | 144 | 14 | 8.6E-16 | ||
| SUPERFAMILY | 132 | 433 | 302 | 9.81E-70 | ||
| Pfam | 147 | 196 | 50 | 1.7E-11 | ||
| ProSiteProfiles | 148 | 199 | 52 | 14.705 | ||
| PRINTS | 150 | 166 | 17 | 8.6E-16 | ||
| Pfam | 199 | 250 | 52 | 2.3E-4 | ||
| PRINTS | 200 | 216 | 17 | 8.6E-16 | ||
| ProSiteProfiles | 200 | 253 | 54 | 11.268 | ||
| PRINTS | 240 | 256 | 17 | 8.6E-16 | ||
| ProSiteProfiles | 254 | 306 | 53 | 10.404 | ||
| PRINTS | 256 | 270 | 15 | 8.6E-16 | ||
| Gene3D | 306 | 517 | 212 | 3.8E-50 | ||
| ProSiteProfiles | 310 | 363 | 54 | 10.986 | ||
| Pfam | 312 | 360 | 49 | 9.9E-5 | ||
| ProSitePatterns | 350 | 360 | 11 | - | ||
| PRINTS | 353 | 371 | 19 | 8.6E-16 | ||
| Pfam | 363 | 412 | 50 | 3.3E-13 | ||
| ProSiteProfiles | 364 | 415 | 52 | 13.539 | ||
| PRINTS | 411 | 432 | 22 | 8.6E-16 | ||
| Pfam | 415 | 465 | 51 | 1.7E-6 | ||
| ProSiteProfiles | 416 | 482 | 67 | 9.881 | ||
| ProSiteProfiles | 483 | 518 | 36 | 9.459 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0097200.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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