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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0097200 |
| Transcript ID | LotjaGi6g1v0097200.8 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of chromosome condensation (RCC1) family protein; TAIR: AT3G26100.2 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2; TrEMBL-Plants: tr|I1MYL4|I1MYL4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0097200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:21089115..21092211) extracted from Lotus japonicus Gifu genome v1.2.
CCCATGGATGCCACAACCAGCGGAAACCCAACTCTCCAATACCATAACATCCCTGACCAGCCAATTGCTGCCATTGTTGC CACACAACTTCCACCATTTCAAAGGCAGCAACGCCATTGCTTTGGGGACTCAACTCCAGGAGAGTTTCCCTTGTCTGCTA ATCCCTCCATTGTCCTCCATGTCCTCACGGCTTGTAATTTGGATCCTCAAGACCTTGCTAAACTAGAGGCAAGTTCTGTG CCTTATCTGCATTGGATGATGATCCATTGTCCCCGTTTGATGTTCTTTTCCCTGTCCTACCAATCAAATTGTGTCATGCA GGTGTGTGGTTTTTAAATGACATTACATAATTTGATTGGTGAGCAGGGAAAGGGAACATCAACTGGGATAGAGGGTTTCG GTCCATATGCATTTCAGCTTTGAGATTGTTCTTTAATAGTATCAATGGCGATAATGCTGACTTTGTTTTTGTTGTGCCTG ATGCAGGCAACATGCCACTTCTTCAAGCAGCCGGCGAACTTTGCTCCGGATTTCACTTTGTCCTTATCCGAGCTTGCTGC ACTAGACATGTGCCAAAAGAGAGCCATCTTTAAGCCAATGAATATGGAAGAGCGAGAAAATTTGAAGCAAAGATGTGGAG GTTCTTGGAAATTGGTTCTGAGGTATTTGCTGGCTGGAGAAGCCTGTTCCAGGAGGGAGAAATCACAGGCAATAGCAGGT CCTGGTCACAGCATTGCTGTGACATCAAAAGGGGCTGTTTACTCATTTGGGTCTAACAGTTCAGGACAACTTGGACATGG CACCACTGATGAGGAATGGCGACCTCGACCAATAAGGTTGGAACTTCTGGGAACATGTGGATATCCCCTCTATCCTTACA GCTTATCCTTAAACTTAAGAACCCGTTTGGGTGCAAACCAAAAGCACTTATTGGAGCTTATTTGGTGCTTTTCCTAGTAG ATAAGCTCCAACAAGTCCATATCCAAATGGGCTCTAAGGCTAACTGGAATTTGAACTAGATGATTGAACTCAATTATGTT TCAGGACTTTGCAAGGCATCAGAATTATACAAGCTGCTGCTGGGGCTGGGAGGACAATGTTGATCAGTGATTCTGGGCAG GTTTATGCATTTGGGAAAGACTCTTTTGGGGATGCTGAGTATGGGGTTCAAGGATCTAAAACAGTTATATCTCCACAATT AGTAGAGTCTTTGAAAAATATATTTGTTGTCCAAGCTGCAATTGGTAATTTTTTCACAGCTGTACTGTCAAGAGAAGGCA GGGTTTATACATTTTCTTGGGGTAGTGATGGCAAACTCGGTCACCACGCCGATCCAAGTGATGTGGAGCCCCATCCTTTA TTAGGAGCTCTGGAAGACATACCAGTAGTGCAAATTGCTGCTGGATACTGCTACCTTCTTTGTCTAGCTTGTCAACCCAC CGGAATGTGAGCTCTAACTATATCTCCTTTACTTGCGTATATTTGCTTTTGTCAGGACATTTGTTGAGAATCCCTTATTG ACTAGATATATAGGCAAATAAGTGTTTATAAAGGACCATGTCTAAGAGCATTAGAGGTCCATATCCTCAAGCTCGGCATT CATGGAAGTGTTGATGATACTTATTCATATTTCAATTAGTTTATACATGAAACTTCATTCTTATTGTTATTACTATCTGA ATGATTATGATGACAACCTTGAGAACTTACAGGTCAGTGTACTCTGTTGGGTGTGGTTTGGGAGGCAAGCTTGGACACGG AACAAGAACTGATGAAAAGTTCCCTCGTCTGATCGAACAGTTTCAGATGTTAAACCTTCAACCTATGGTTGTTGCAGCTG GTGCTTGGCATGCTGCTGTGGTAGGGAAGGATGGCCGTGTTTGCACATGGGGATGGGGTCGATATGGTTGCTTGGGGCAT GGGAATGAAGATTGTGAATCTGTACCTAAGGTAGTGGAAGCATTGACTAATGTCAAAGCGGTTTATGTTGCAACAGGAGA CTACACAACATTTGTAGTGTCTGATGATGGTGATGTGTACTCATTTGGGTGTGGGGAATCTGCTAGTCTCGGGCATAATG CTGGAAATGATGTACAGGTCTGTTTTGTTTCTGCATTTTTACCTGTTTGATTTGAGTTATATTTGCATGACTGAGTTGAA AAATGATGTGCTTCACCGTTTTCTTTCTATGTAATAAGTTTTATCTTATGAAGCTCACATTGTGTTTTATGTGCTAACTA TTGTTTCGCATCCCAACCTGAATTATAGATGTAGCATTAGCCTGACCATTACCTGAATGAGATGTTATAATACGATAAGA ACGTTAGGAGAACCGTACCACAAAGGCGCCGTTGTAGTTGAAAAGCTTATGACCCCCCCCCCCCCCCCCCCCAACACACA CACACACACACTAGACTCTCATACTTCCAATGCGGGACCCAAAGTCGAATTGGATTCTGACATCAGGCTGGCTGTGCACT AGCTCCTTTGACCACAGCAAAGCTGGCATCCCTGCCCAAACCGCATTTTTCAGCTGAGAGACATGGTGGAAGACTCTGAT ACCAAATGATAAGAACCTTGGGAGAACCATATCACCCAAGTTAGGTGGCAAAGATTCTGATACCAATTGATAAGAACCTT GGGACTTGGGAGAACCATACCTGGTCTAATTCCTTATAAACCTCACTCTAGAATCTCATACTTTTAATGTAGGCCTCGAG CCCTATACCTTGCAATTGGATCCTAGCATAATACTAATGGCTATAGTGCATTCAATTATATGTTAATATTTTTATGTCAG TATTAGTTATACATCTAATAGAAATATTTTATTCAACCATTTGTACATGTACAGGGAAACAGACATGCAAATGTGTTAAG TCCACAGCTTGTGACTTCACTGAAACAGATCAATGAAAGGGTGGTGCAGATTAGCCTGACCAATTCCATATACTGGAATG CTCACACCTTTGCACTCACTGAATCAGGGAAGCTGTATGCATTTGGGGCTGGAGACAAAGGACAGTTAGGAATTGAGCTT GTTGAAAACCAGACTGAAAGGGGGAATCCAGAACGCGTTGACATTGGTCTTGGTTAA
CDS sequence (LotjaGi6g1v0097200.8) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCCACAACCAGCGGAAACCCAACTCTCCAATACCATAACATCCCTGACCAGCCAATTGCTGCCATTGTTGCCAC ACAACTTCCACCATTTCAAAGGCAGCAACGCCATTGCTTTGGGGACTCAACTCCAGGAGAGTTTCCCTTGTCTGCTAATC CCTCCATTGTCCTCCATGTCCTCACGGCTTGTAATTTGGATCCTCAAGACCTTGCTAAACTAGAGGCAACATGCCACTTC TTCAAGCAGCCGGCGAACTTTGCTCCGGATTTCACTTTGTCCTTATCCGAGCTTGCTGCACTAGACATGTGCCAAAAGAG AGCCATCTTTAAGCCAATGAATATGGAAGAGCGAGAAAATTTGAAGCAAAGATGTGGAGGTTCTTGGAAATTGGTTCTGA GGTATTTGCTGGCTGGAGAAGCCTGTTCCAGGAGGGAGAAATCACAGGCAATAGCAGGTCCTGGTCACAGCATTGCTGTG ACATCAAAAGGGGCTGTTTACTCATTTGGGTCTAACAGTTCAGGACAACTTGGACATGGCACCACTGATGAGGAATGGCG ACCTCGACCAATAAGGACTTTGCAAGGCATCAGAATTATACAAGCTGCTGCTGGGGCTGGGAGGACAATGTTGATCAGTG ATTCTGGGCAGGTTTATGCATTTGGGAAAGACTCTTTTGGGGATGCTGAGTATGGGGTTCAAGGATCTAAAACAGTTATA TCTCCACAATTAGTAGAGTCTTTGAAAAATATATTTGTTGTCCAAGCTGCAATTGGTAATTTTTTCACAGCTGTACTGTC AAGAGAAGGCAGGGTTTATACATTTTCTTGGGGTAGTGATGGCAAACTCGGTCACCACGCCGATCCAAGTGATGTGGAGC CCCATCCTTTATTAGGAGCTCTGGAAGACATACCAGTAGTGCAAATTGCTGCTGGATACTGCTACCTTCTTTGTCTAGCT TGTCAACCCACCGGAATGTCAGTGTACTCTGTTGGGTGTGGTTTGGGAGGCAAGCTTGGACACGGAACAAGAACTGATGA AAAGTTCCCTCGTCTGATCGAACAGTTTCAGATGTTAAACCTTCAACCTATGGTTGTTGCAGCTGGTGCTTGGCATGCTG CTGTGGTAGGGAAGGATGGCCGTGTTTGCACATGGGGATGGGGTCGATATGGTTGCTTGGGGCATGGGAATGAAGATTGT GAATCTGTACCTAAGGTAGTGGAAGCATTGACTAATGTCAAAGCGGTTTATGTTGCAACAGGAGACTACACAACATTTGT AGTGTCTGATGATGGTGATGTGTACTCATTTGGGTGTGGGGAATCTGCTAGTCTCGGGCATAATGCTGGAAATGATGTAC AGGGAAACAGACATGCAAATGTGTTAAGTCCACAGCTTGTGACTTCACTGAAACAGATCAATGAAAGGGTGGTGCAGATT AGCCTGACCAATTCCATATACTGGAATGCTCACACCTTTGCACTCACTGAATCAGGGAAGCTGTATGCATTTGGGGCTGG AGACAAAGGACAGTTAGGAATTGAGCTTGTTGAAAACCAGACTGAAAGGGGGAATCCAGAACGCGTTGACATTGGTCTTG GTTAA
Protein sequence (LotjaGi6g1v0097200.8) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDATTSGNPTLQYHNIPDQPIAAIVATQLPPFQRQQRHCFGDSTPGEFPLSANPSIVLHVLTACNLDPQDLAKLEATCHF FKQPANFAPDFTLSLSELAALDMCQKRAIFKPMNMEERENLKQRCGGSWKLVLRYLLAGEACSRREKSQAIAGPGHSIAV TSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLQGIRIIQAAAGAGRTMLISDSGQVYAFGKDSFGDAEYGVQGSKTVI SPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGSDGKLGHHADPSDVEPHPLLGALEDIPVVQIAAGYCYLLCLA CQPTGMSVYSVGCGLGGKLGHGTRTDEKFPRLIEQFQMLNLQPMVVAAGAWHAAVVGKDGRVCTWGWGRYGCLGHGNEDC ESVPKVVEALTNVKAVYVATGDYTTFVVSDDGDVYSFGCGESASLGHNAGNDVQGNRHANVLSPQLVTSLKQINERVVQI SLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVENQTERGNPERVDIGLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 533 | 533 | 0.0 | – | |
| PANTHER | 1 | 533 | 533 | 0.0 | – | |
| Gene3D | 137 | 321 | 185 | 2.6E-47 | ||
| PRINTS | 147 | 160 | 14 | 1.0E-15 | ||
| SUPERFAMILY | 148 | 448 | 301 | 1.37E-69 | ||
| Pfam | 163 | 212 | 50 | 1.8E-11 | ||
| ProSiteProfiles | 164 | 215 | 52 | 14.705 | ||
| PRINTS | 166 | 182 | 17 | 1.0E-15 | ||
| ProSiteProfiles | 216 | 269 | 54 | 11.268 | ||
| PRINTS | 216 | 232 | 17 | 1.0E-15 | ||
| PRINTS | 256 | 272 | 17 | 1.0E-15 | ||
| ProSiteProfiles | 270 | 322 | 53 | 10.404 | ||
| PRINTS | 272 | 286 | 15 | 1.0E-15 | ||
| Gene3D | 322 | 533 | 212 | 3.9E-50 | ||
| ProSiteProfiles | 326 | 379 | 54 | 10.986 | ||
| Pfam | 328 | 376 | 49 | 1.0E-4 | ||
| ProSitePatterns | 366 | 376 | 11 | - | ||
| PRINTS | 369 | 387 | 19 | 1.0E-15 | ||
| Pfam | 379 | 428 | 50 | 3.5E-13 | ||
| ProSiteProfiles | 380 | 431 | 52 | 13.539 | ||
| PRINTS | 427 | 448 | 22 | 1.0E-15 | ||
| Pfam | 431 | 481 | 51 | 1.8E-6 | ||
| ProSiteProfiles | 432 | 498 | 67 | 9.881 | ||
| ProSiteProfiles | 499 | 534 | 36 | 9.459 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0097200.8, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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