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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0098400 |
| Transcript ID | LotjaGi6g1v0098400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING finger protein; TAIR: AT1G24440.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q99MB7|RN141_MOUSE RING finger protein 141; TrEMBL-Plants: tr|A0A0S3S149|A0A0S3S149_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0098400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:21306515..21309186) extracted from Lotus japonicus Gifu genome v1.2.
ACGCAACGCATCGTGTGTCAAACGGCATTCCTTACTTCACCCACCGCAACACCCAAAAACCAAAACCCAACGACACTCAT ATGAAGCATCCCCATGGTTCATACTTCAAACTTTATCATCGAAAAGTTAAACCCTTTATCTCCTCTTCGTCAATTCAATT GCTCACTTATTTCTTTGATTGAAACTAAGACAAGGGTGTCAAAAAGAACTTGATCATTTTCACAGAAGGAGGAAACGTTC TCTGCTTTCTCCGTGACCCATTTGATTCTCTGCTTCAGCTTTTCATTTCATCAAGTAAAGGCAAAAAATAAGAAAAGGAT GGCTATGATGGCATACCAACTTTCTCGGTTACCTTACCAAGATTCCCTCAAATTACTCGAAGCTGATATACAACACGCCA ATGCTTTGTGAGTTTCATTTTTCCATTTCCCTTAATTTTCTCTCATCATTTTTTCAACTTTCCTTTCTGATTTATGTATT TTTGGGTATGAAAAAGTTTTCGAATGGAGGGCTTTCTTTTATTATTGACTTCAATTTTTCAACATGAACACAGTCAACGT CTATACATGTTCATTGAATTTGGTACTCTTACAGCATTTCAATGCTAGTTCTTAGAAGTTGTTCTTAACCTAAGAACTAA GAACCAAGTTCTTAAGCATTGGAGAGGGTTGTCGTGAAGTTTTTAGTTCTTATATAAGCAACTTTGCTTTATGAGTTATT AGCATAAAATAAACATTTTTTCTATTTCATCCAAATTGTTTTATTACTTTATGAGTTTTGGTGTGGTGAGACCAAATAAA TAGTGCTAAGAACTCAAAGTTAAGAACTTGTGGTTGGAGTGAATTATGCAGACTTAAGAGTTTTTTAAGCATATGTGGCA CTACGGGTCACATGAATAATGCTTAAGAACTCACCTCTGAGAACTAATATTGGAGATGCTCTTAGTAGCATTTTGTTTGA TTGTGCATTTTTATCTCTCTGATTTTTGGTTTTCCTCTCTGAATTTGAAATTTTGAATTATGGGTTTGCACTGTTTAGGG CTGCTGCAATTCCCACAACAAAGGGTGGGTCTCTTCTTCAGATGAAATTGGTTTGCAATCAATTGGCTCCTCTTTTTCTA TTGTTTCTGCAATGGATAGATTGTTCTTGTTCAGGGTTTCTGCATAGGTATCTTGACCTCTTCCACATAGTTATATACAA GGTGAGTTCCTGAATGAAGGTTATCCATTTCTGAATTATTTTTTTGGACTAGCTCAAAGTGCTTGTAGGCTATAATTTGA TTCATGTTTGTCCTTTGTTGTTATTGTGTTAGGCTATAATATGATTCTTTTTTTTTTCTTTGTTGTTATTGTTCTCCTAC TTTTACATAGGTAAACAGTGATGGTCGATCAATAATGTCCACTCATAGAAGAAAGGCAACCATTGGGGACTTTTATGGTG AGTGAATATTTGACTTGCAAAAAGCATCTTTATTATTGTTTTTTTTTTCCTTACACTGAAAAGTTTAATTATTTATAGTT GTCAATTGTCATGACTGATTATTCCAACTTTTTGTTTTTGCCATAAAAAATTGAACTTTTAGCCGTTATATTGCCATCTC TCCAGCGGCTTCTTGGTAGCTTTGATAAGTCTGAGCTTTCTGATCAAGGGCCATCAAGCATAGAAGGTTCAAGATATGGC AAAAAGGTGATTGAAGGAGATGAGAAACTAACCAATGTTGATTTGCAAAGGGAAGATGAATGTGGGATTTGCTTAGAGCC TTGCACCAAAATTGTGCTGCCTTATTGCTGTCATGCCATGTGTATAAAATGCTACTGCAAGTGGTAATCACAATTACATT TGTTTGTATCCCATGTTGTCAGCTTGCAAAGTTCTGTATCAATGGCTTATCGTTTTAACACTCTTCTTTTGGACTCTTTT TCAACCTGCAGGAACAGAAAGTCAGAGTCTTGCCCTTTTTGCCGCAGTAGCTTGAGGAGGGTTAAGTCGGAGGATCTATG GGTACTAACTTGTAATGAAGATGTTGTTGATGCTGAAACAGTTTCTAGGGAGGACCTGTTGCATTTTTACCTCTATATCA ACAAGCTTCCTAAAGACCACCCAGATGCTCTTTTTCTAATGTATTATGAGTACCTGATTTAAGTTTTTACATAATAAGAA GAAAAAAAATTGTACAGGTAGGAAAGTACTCCAGACCCACAATTGTAAATAGAGTCTAGTAAGGAAAAAAAATACTCTGG TCATATCTCTAGTAAGAGATGTTCCTGGATTTTTAGCCCTGAAGAACCATGTTCTTACTACTCCAATGAGTATGATATAC CTCCTACTGCTCTCAGAATTAATTTGAAATTCCTTGTTTGAATAGCTAAACTATTTTCTTTCTGGGAAGCTAATTAAGAT ATAAAGATTCATAAGTTGATCTTCTTGTATGATACATATTGAAACGAACTCAAATTGTGAAGATGAATCTGTGTATTAAT AGTGGGAAGGAATATGAATTTTATGTACTTTAAATTTTATTTGTATAGATAGAATCCAAGGTGTTAAGCAGGTTCATAAA TAATTTTATGATCTTTCTCTATGTTATGAATTACATTAGAAGTGTGTGTTTGGATACATATTAAACTGAATGTCAATTCA CATTGAAGTTAATATGAAAATTTAAATTTCTC
CDS sequence (LotjaGi6g1v0098400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTATGATGGCATACCAACTTTCTCGGTTACCTTACCAAGATTCCCTCAAATTACTCGAAGCTGATATACAACACGC CAATGCTTTGGCTGCTGCAATTCCCACAACAAAGGGTGGGTCTCTTCTTCAGATGAAATTGGTTTGCAATCAATTGGCTC CTCTTTTTCTATTGTTTCTGCAATGGATAGATTGTTCTTGTTCAGGGTTTCTGCATAGGTATCTTGACCTCTTCCACATA GTTATATACAAGGTAAACAGTGATGGTCGATCAATAATGTCCACTCATAGAAGAAAGGCAACCATTGGGGACTTTTATGC CGTTATATTGCCATCTCTCCAGCGGCTTCTTGGTAGCTTTGATAAGTCTGAGCTTTCTGATCAAGGGCCATCAAGCATAG AAGGTTCAAGATATGGCAAAAAGGTGATTGAAGGAGATGAGAAACTAACCAATGTTGATTTGCAAAGGGAAGATGAATGT GGGATTTGCTTAGAGCCTTGCACCAAAATTGTGCTGCCTTATTGCTGTCATGCCATGTGTATAAAATGCTACTGCAAGTG GAACAGAAAGTCAGAGTCTTGCCCTTTTTGCCGCAGTAGCTTGAGGAGGGTTAAGTCGGAGGATCTATGGGTACTAACTT GTAATGAAGATGTTGTTGATGCTGAAACAGTTTCTAGGGAGGACCTGTTGCATTTTTACCTCTATATCAACAAGCTTCCT AAAGACCACCCAGATGCTCTTTTTCTAATGTATTATGAGTACCTGATTTAA
Protein sequence (LotjaGi6g1v0098400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMMAYQLSRLPYQDSLKLLEADIQHANALAAAIPTTKGGSLLQMKLVCNQLAPLFLLFLQWIDCSCSGFLHRYLDLFHI VIYKVNSDGRSIMSTHRRKATIGDFYAVILPSLQRLLGSFDKSELSDQGPSSIEGSRYGKKVIEGDEKLTNVDLQREDEC GICLEPCTKIVLPYCCHAMCIKCYCKWNRKSESCPFCRSSLRRVKSEDLWVLTCNEDVVDAETVSREDLLHFYLYINKLP KDHPDALFLMYYEYLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 256 | 249 | 3.1E-125 | – | |
| PANTHER | 8 | 256 | 249 | 3.1E-125 | – | |
| Gene3D | 135 | 209 | 75 | 1.9E-11 | ||
| SUPERFAMILY | 151 | 203 | 53 | 1.15E-10 | – | |
| Pfam | 158 | 198 | 41 | 3.0E-6 | ||
| ProSiteProfiles | 160 | 198 | 39 | 11.147 | ||
| ProSitePatterns | 175 | 184 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0098400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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