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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0114800 |
| Transcript ID | LotjaGi6g1v0114800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING finger protein; TAIR: AT3G47160.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q6IV56|RN141_DANRE RING finger protein 141; TrEMBL-Plants: tr|A0A151U9W5|A0A151U9W5_CAJCA RING finger protein 141; Found in the gene: LotjaGi6g1v0114800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:27443246..27444893) extracted from Lotus japonicus Gifu genome v1.2.
TCTCTTTACTCTTCTCTCCTTTACAGGGCATTGGATCATCCAAGGGAAAATGATGGAGGATGCTTTCAGATGAGGCTGTC TTACAGTCCAGTAGCCCCCATTTTTCTCCCTCTTGTTCAGTGGGCAGATTACAACCTTGCTGGTGCTCTTGGTTTGCTGA GAATTCTAATTTATGTGGTACATGTCTTTGTCCTTAATATTATTAGAACATCACAGATTTTTGTCTAGATTTTATTTTCT TCATATGTACTAATATTGTTATTATCTGTTTTTAGATAATTTCAAATTATTTGCTTCCACATTCATGCAGACTTATGCAA ATGGGAATACTACTATGTCGATTTATGAAAGGAAATCAAGCATTAGACAATTTTATTGTAAGTTGAATGTCTACCTACAT AGCTTTCTGTATTTTTATGTTCTTGATAATGAATGAATACTTACCTTATTTTTATTGATAAACAGCGATTATATTTCCCG CTCTATTGCAACTTCAGAAAGGCCTCACGGATTTGGATGAGAGGAAACAGAAAGAAGTGTATTCTACTCGGTACCAAAGG AAGACTGAGTGCAGAGAGAGAAGACAATCTGAAATTGACATTGAAAGAGAAGAGGAATGTGGAGTTTGCTTTGAGGTGAA AGCAAAAGTTGTGCTGCCTAATTGCTGCCACTATATGTGTTTGAAGTGCTACAGCGATTGGTAAAATTACTTGACTGTGC TTCAATTAGTTCGTTTCATCCTCCAATCCATCTTAAGTTTCTTTCAAGTTATATTTGTACATTATGCTAATTATACTTTT GACTGAAAAATAAGTTGATTTCTTGGTACATAAAACTAAATTTTTATCTGATTTTTTGGATGTCCTTTTGTTTGTTTGTT ATAATTTTTGCATTATGTTTTTACAAGTCTACTATCAACATTTGAATGAAACATGTTGAGTTAAAAAGGATAAGAGAGAA TATCAATGAGAAAATCTTATGTGCTAAATTAGTAGGAGTAGTCCTTCTGATCTAATGAAAGGGAGCCTTAGCGTAATGGT TTAAGTCATGGAAACAGTCTCTTGTGTAAAAGACAAGGTAATACTGCATACAATAGACCAAACGGTCGGACCCCTTCCTG GACTCGCACATGCGGGAGCTTTGTGCACTGGACTGCCCTTTTTTTGAAGTCCTTCTGACCGAACTTGTGTTAGGCTGAGC AATTTTTGAAAAAGTTGAGAATGACTTCTCTTAAGTTCTTAGATTGTAATCCGGTTGCTTTTACTTAATTAAAAGCGAAA CTTCTGATTTTTCATCACCCTCATTCTCTTTGCAACTAAAGAGCAAGGTGCAATCTGCCCCATCCCCTGCCCCCTAAATA TGGTTAACTACTTATTTCTTATACTAGTTTGTTCTTTTGTCATTGTTTAGACTTGACCATGGTGCTTTTTGATTCAGGTG TATGAGGTCTCAATCTTGCCCCTTTTGCCGGGATAGCCTGAAAAGAGTAAACAGTGGGGACCTTTGGATTTACACAGACA TGAGTGAAATTGTTGATATGGGGACAGTTTTCAAAGAAAATTGTAAAATGCTGTTTCTGTACATAGAGAGTTTGCCTCTT ATTATTCCAGACCCCAGACATGTCTCCTTTGATCCGTTTATGAGGTGA
CDS sequence (LotjaGi6g1v0114800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGCTGTCTTACAGTCCAGTAGCCCCCATTTTTCTCCCTCTTGTTCAGTGGGCAGATTACAACCTTGCTGGTGCTCT TGGTTTGCTGAGAATTCTAATTTATGTGACTTATGCAAATGGGAATACTACTATGTCGATTTATGAAAGGAAATCAAGCA TTAGACAATTTTATTCGATTATATTTCCCGCTCTATTGCAACTTCAGAAAGGCCTCACGGATTTGGATGAGAGGAAACAG AAAGAAGTGTATTCTACTCGGTACCAAAGGAAGACTGAGTGCAGAGAGAGAAGACAATCTGAAATTGACATTGAAAGAGA AGAGGAATGTGGAGTTTGCTTTGAGGTGAAAGCAAAAGTTGTGCTGCCTAATTGCTGCCACTATATGTGTTTGAAGTGCT ACAGCGATTGGTGTATGAGGTCTCAATCTTGCCCCTTTTGCCGGGATAGCCTGAAAAGAGTAAACAGTGGGGACCTTTGG ATTTACACAGACATGAGTGAAATTGTTGATATGGGGACAGTTTTCAAAGAAAATTGTAAAATGCTGTTTCTGTACATAGA GAGTTTGCCTCTTATTATTCCAGACCCCAGACATGTCTCCTTTGATCCGTTTATGAGGTGA
Protein sequence (LotjaGi6g1v0114800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLSYSPVAPIFLPLVQWADYNLAGALGLLRILIYVTYANGNTTMSIYERKSSIRQFYSIIFPALLQLQKGLTDLDERKQ KEVYSTRYQRKTECRERRQSEIDIEREEECGVCFEVKAKVVLPNCCHYMCLKCYSDWCMRSQSCPFCRDSLKRVNSGDLW IYTDMSEIVDMGTVFKENCKMLFLYIESLPLIIPDPRHVSFDPFMR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 204 | 204 | 1.5E-105 | – | |
| PANTHER | 1 | 204 | 204 | 1.5E-105 | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 23 | 41 | 19 | - | – | |
| Phobius | 42 | 206 | 165 | - | – | |
| Gene3D | 74 | 157 | 84 | 7.8E-12 | ||
| SUPERFAMILY | 96 | 153 | 58 | 1.64E-11 | – | |
| Pfam | 107 | 153 | 47 | 2.3E-7 | – | |
| ProSiteProfiles | 110 | 148 | 39 | 10.94 | ||
| SMART | 110 | 147 | 38 | 0.0037 | ||
| ProSitePatterns | 125 | 134 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0114800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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