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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0123500 |
| Transcript ID | LotjaGi6g1v0123500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Omega-3 fatty acid desaturase; TAIR: AT5G05580.1 fatty acid desaturase 8; Swiss-Prot: sp|P32291|FAD3E_VIGRR Omega-3 fatty acid desaturase, endoplasmic reticulum; TrEMBL-Plants: tr|I3TAN8|I3TAN8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0123500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:31539874..31545069) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAACATTGCCATAGTTAGTAAATTTACATCCTTGTATTGTATGTCTATTCTACTGATTCATTTTGTTAGGCCACGGA AATTAATGCATAATTAGGTTGCCATATATTTGAAACCGTATAGGAGGAGATTTTGTCAGAGACACGAAAACTAAAGAAAT AAAGAAAAAGAAAGGGGAAATTATTTAATGAAAATATCTTACTGTAAAAAAAATGTTACCATACCATAGTTACTTTTTGC TGTTATATATATATATGTGACCCCATGTGTACTTCTGAAAGATCATCAACATCTATATAGCTTTTACTTATTACTTATTC TATAGCTAAAATCTATCTCTTCTCTGCGCCAGACCATTGTAGCAGAGAGAGACATTTAGCAACAATGGTGAAAGGACCAG AATCTCTCCCAAATGGTGTTAATGGTGTAGGGAATGGGCACCACCACCAAGATTATTTTGATCCAAGTGCTCCTCCACCG TTCAAGATTGGAGAAATCAGAGCAGCCATTCCCAAACATTGCTGGGTGAAGAATCCATGGAGGTCTCTGAGTTATGTTCT CAGGGATGTCTTGGTTGTAACAGCATTGGGGGCTGCAGCACTTCACTTCAATAACTGGCTCTTCTGGCCACTCTACTGGG CTGCTCAGGGCACAATGTTCTGGGCACTTTTTGTTCTTGGACATGATTGGTAAATTTATTCATTTTTTCAACACAATGCC CATTCATTCATTGTTATTACTTATTAACATGTTTGGTTTGACGATTTGCACAGAACAACAACTTTGTTACTCAAATACTA AATGTATTTTTAGAAATCCTTCTACAATTGATTTTGAAATCTAGCTTCTGCATTTCAGAATTAGATTTGGTAAAATTGAA GTTGATCCAAACATGCAGTAACAATCCTGACTCATTGTTATGAGCATGTTTGATTTTACGATTTGCACATAACAACTCAA TGTTTGTTGTAAAACCCTTTTATAGTTAATTCTTCCAGCAGAATCAATTCTCAACATATGGGTTTTAGAATTAGATTCTA CTAAGCTCATGTTGTCAGACTTGTAATTCCAAAGCATTTCAATGTGCAACCAATTATGCTATATGTTATGCCTTCTCAAT GAACCAATCTTATGCATTTCAATTGGTTATGATTTGTGTATTGTATTTGAAGTTTGAATCTTTCTTCATTGAACAGTGGC CATGGAAGCTTTTCAGACAGTCTCATGCTCAATAGTGTGGTGGGCCACATCCTGCACTCCTTTATTCTTGTACCATACCA TGGATGGTTAGTTCTTTTTAGCACCTTTTTCCCTTTTGCTTTTCTTATCCTTGATGTTCTTTTCTTCACCACATCTTTAA TCTGGTTAGGCACTAAACCATGTTACTCTGGCTCTTGAATTTTGCAGGAGAATTAGCCACAGAACTCACCATCAAAACCA TGGACATGTTGAGAAAGATGAATCATGGGTTCCTGTATGTGCATTGTAGTTCCTTAATTTTCAATTTTGTTTAGGCAATA GAAGAAAAGGGAAATCTAACGATGCAACTTGTTAAGACTTTTCAATTTTCATGATTATGGGTCTTTTTCTTTGTCTTGAT TTCAGATGACAGAGAAGATTTACAAAAATCTAGACAGTGCGACAAAAACCCTGAGATTCTCCTTTCCTTTTCCAATCTTT GCATACCCATTTTATTTGGTGAGAACTTAAATTGTTTTCAAAATTATTGAGGTAAAATTAAATTGAAGGTTCTTAGATTG GATCTCACTAAGTTTTTCTGATATGAATTATACCATAATGTTACAGTGGAACAGAAGCCCTGGAAAAGAAGGGTCTCATT TCAACCCATTCAGCAAACTGTTCACCCCAAGTGACAGAAGAGACGTGTTCACTTCAACTCTTTGTTGGTCCATCATGTTC TGTGCACTTCTCTGTCTATCCTTCATAATGGGTCCATCTTTTATGTTCATGCTATATGGAATTCCCTATTTGGTAATTAT CTCACTCTAACATCCTCTTTTCAAGTTAATCAGTTAGAAAATTTCTCATGGTAGTTGTTCAACTCTTTTTACCAATTATT TTAAGGATCTAAGAGCGATTTAATAGCATATTTAGTTCTGAGGTAGAAAATTTCATAATCACCAAAAAAAAAAAATGTTC ACAGTCAATTAATGGTTGTGTTTGCATTTTTAGCTCTGCATATTTCAAGGCAATTTAAATGCTCGACCGATTCAAATCTT TTATTTTATTTTTAAATGGATTCAAATCTTTTAAGTCGTGCATGTGTTTTTTTTTTCTAACTTGATCATAAATAGAAAAG TCACTATCATCTTTATAATGTTGTGGGGTCTAATGAAAATAAATATAGAAGTATATAATAGTAAAATATAATTGAGTGAA TAAATATTTTAGAATAGTTGGGAAGGAGTACAAAATTAGTTAAGTTTCTTGAAGTATAAAAAATGTATGTTTAAAAAAAA TAAAAAAATGTATGATACTATAAGAAATTGTAATATTAATAGAGATGCTTTAAAATATTGGGTTAAATACACTTCTAATA GATCACTCAAAAACAAGTGTACATATAACACAACTTTTAACATGTAAAGTGACATAAATCATTTTATCTTTTGGTTAGCA TAAAAAGTTCTGATCAACATAAACTTTTTTTTTTGTTAGTTATTGGATGAAAAATCAACTTCATTTGTAATACTCCCTCT GTTCCTAAATATAAGATCTATTCCAAAAAATTTCGCTTATTAAGAAAGCACTTAATGTGACTAATTAGTGTATTGATTTT TTAAAAATGCATACATTCTTCCCTATTTACCCTTTGTCATTTTCTCTTACTAATAATCATTGCATTCATAGTTAGTTGGA ATAGTAGTAATTAATGGTAGGTGGTAACTTTAAAATTGAAAACATACAATTAATGTGAGGGGTGAATATGGAATAGTACA AAACCTTTTGCTAGATTTTTGTAAGAGGTCTTATATTTAAGAAAATGAAAATTTTGAAACTAGATCTTATAATTAGGAAC GGAGGAAGTAATATAGAAACTTAAATTGTATATGAAACCTATATGGACTAAAATCATATATTTCTGGACCAATTGATAAC TAAGCATAAAGCATCTACATTTGATATCAGTCAAGTCATGTGCCAAACATATTCACTTATTTGAACATGTGTAGATCTTC GTGGTCTGGTTGGACTTCGTGACATACTTGCATCACCATGGTTACAAGCAGAAGCTACCTTGGTACCGTGGCAAGGTAAC ATCCCAAAGCTCATTTTTTCGCTTCAATTTTCTTGTGTAAGAAAATAGTTCTTTATTTTTATAAATTATTGTAAGTGTTA TATTTTTTATGTTTAAAATTTTATATCAAAAGAGTAAAAGAAAAAAGTTTATATATTGAGAGACAAATTCCACACTTATT TTGGAAAGCGTGTTGCCTGTTTGGGAAAGAAAAGCAAGGTTCACTTTAAACGCGGTTGGGTTGCACGTGGAATCTGACGA AAATCCAAAGATCGAAAAATTGACAAATCAAAAACAAATATAACATATTTTAAAAAATAGTTATTTAAGTAAAAGATTAT TTTCTTTACTGTTTAAACATATTCTATCTATAATATGCTTTATACGCATTTTGTCATCATCCCTCATAAGACTGTAGGTC ATTAACGTGTTACTTGACTCTGCAATTTGACAGGAATGGGATTATCTTAGGGGTGGTCTTACAACCGTTGATCGTGACTA TGGTTGGGTTAACAACATTCACCATGACATTGGCACACATGTTATTCATCATCTTTTCCCTCAAATTCCTCACTATCATT TGGTAGAAGCGGTATGTACCCGTAATTAACTGTTGAATGGTTTTTTTTTTTTTTTTTTAAATGGTTAAATTTGTCCTAAA ACATGTTAGGCCCTGATAAATTCTTTTGTAGAATAAGAAAATATCTTTGTGGTTTCTAATTATATAAAATGTGTGTCAGA GGTTAACATGACTAGTGTTTTATTTAATCACAAGAATATACTTGATCTACATTTTACACAGTAAGGTACATAGAGAGTAT ATTCTAAGTCCATAGACATACTTGTCCGAGCACATCACTTTAAAGAACCATTTAAACCATTCACTCCATAATTAATCTTT CTGTTTTGTTGATTTTTTAATCGAGTGGGTGTTCAATTTCATTTCAACAATAACAAGTGTCTTTAAAAAAAGAAAACACT CATGCGGTACTTAATTGTATCAAATGTTGGTCAAGTAACTTGATCAACGTTTTGTTAACCATAAAACTTAACTTGATCAA CATTGAATAACATCGAAAATCGCAGAGTATTTTCCTGAACAAGGAACTTACTCAACACTTACACTTTGAATGACGACATT TTATTTTACTAGTAATTCAGTCCATGCAATCTACAAAATCTCTTTCTATGGTTCACAATATATAATAACAGAAAAGAGAC AAAAGACCACAATCTCAAAACACAAAAAGACACACATTACCTTAAGAATCTCTGCAACATGTTTGATGATTTCCATTGTT TTTAATTGTACAACACAGACACAAGCAGCAAAGCCAGTGCTTGGAAAGTATTACCGAGAGCCAGAGAAATCTGGGCCATT CCCACTCCATCTAATCAAGTACTTCCAGCGCAGCATAAGTCAGGACCATTTCGTGAGTGAAACTGGAGACATTGTCTTTT ACCAAACAGATCCTCTGCTCCTAAAAAATTCGTGTCTCAACAACAACAAGACTCACTAGTAGTAGTAGTAACGTGTGTGT TTGCTCCTAAATTGATCATAATGCACCATGCCACTCAAGTTTTAACTTTTCTTGGCTGGCACCCTTGCTCTTATTTTTCA AAAAAATAAATGATTTTGACCTTTATGTCAAAAATACATTTATCTAGTTCAGTTCTACAAGCTTGATCATGGTAAAAAGT CTTCTATATGTAATCTTATACATTATGATTAAGATTCATTTTTAAGTAGTAACTCTTTTTGTTTTACCTCTTGTTACGTT TAATTTCATATGTATTGAAGCATAAAAGTTTTGAGTTTATTTCACTTGAGAATCTTTTTTATTTCTTTTTAATTTTTAAA AGCTTGAAGTTTTTTTTTCGATGGAACACAAAATATAAAGTTAAAAGACAGTTAATGTGAAGTGACGTTCAACCTA
CDS sequence (LotjaGi6g1v0123500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAAAGGACCAGAATCTCTCCCAAATGGTGTTAATGGTGTAGGGAATGGGCACCACCACCAAGATTATTTTGATCC AAGTGCTCCTCCACCGTTCAAGATTGGAGAAATCAGAGCAGCCATTCCCAAACATTGCTGGGTGAAGAATCCATGGAGGT CTCTGAGTTATGTTCTCAGGGATGTCTTGGTTGTAACAGCATTGGGGGCTGCAGCACTTCACTTCAATAACTGGCTCTTC TGGCCACTCTACTGGGCTGCTCAGGGCACAATGTTCTGGGCACTTTTTGTTCTTGGACATGATTGTGGCCATGGAAGCTT TTCAGACAGTCTCATGCTCAATAGTGTGGTGGGCCACATCCTGCACTCCTTTATTCTTGTACCATACCATGGATGGAGAA TTAGCCACAGAACTCACCATCAAAACCATGGACATGTTGAGAAAGATGAATCATGGGTTCCTATGACAGAGAAGATTTAC AAAAATCTAGACAGTGCGACAAAAACCCTGAGATTCTCCTTTCCTTTTCCAATCTTTGCATACCCATTTTATTTGTGGAA CAGAAGCCCTGGAAAAGAAGGGTCTCATTTCAACCCATTCAGCAAACTGTTCACCCCAAGTGACAGAAGAGACGTGTTCA CTTCAACTCTTTGTTGGTCCATCATGTTCTGTGCACTTCTCTGTCTATCCTTCATAATGGGTCCATCTTTTATGTTCATG CTATATGGAATTCCCTATTTGATCTTCGTGGTCTGGTTGGACTTCGTGACATACTTGCATCACCATGGTTACAAGCAGAA GCTACCTTGGTACCGTGGCAAGGAATGGGATTATCTTAGGGGTGGTCTTACAACCGTTGATCGTGACTATGGTTGGGTTA ACAACATTCACCATGACATTGGCACACATGTTATTCATCATCTTTTCCCTCAAATTCCTCACTATCATTTGGTAGAAGCG ACACAAGCAGCAAAGCCAGTGCTTGGAAAGTATTACCGAGAGCCAGAGAAATCTGGGCCATTCCCACTCCATCTAATCAA GTACTTCCAGCGCAGCATAAGTCAGGACCATTTCGTGAGTGAAACTGGAGACATTGTCTTTTACCAAACAGATCCTCTGC TCCTAAAAAATTCGTGTCTCAACAACAACAAGACTCACTAG
Protein sequence (LotjaGi6g1v0123500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKGPESLPNGVNGVGNGHHHQDYFDPSAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDVLVVTALGAAALHFNNWLF WPLYWAAQGTMFWALFVLGHDCGHGSFSDSLMLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVEKDESWVPMTEKIY KNLDSATKTLRFSFPFPIFAYPFYLWNRSPGKEGSHFNPFSKLFTPSDRRDVFTSTLCWSIMFCALLCLSFIMGPSFMFM LYGIPYLIFVVWLDFVTYLHHHGYKQKLPWYRGKEWDYLRGGLTTVDRDYGWVNNIHHDIGTHVIHHLFPQIPHYHLVEA TQAAKPVLGKYYREPEKSGPFPLHLIKYFQRSISQDHFVSETGDIVFYQTDPLLLKNSCLNNNKTH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 56 | 56 | - | – | |
| Pfam | 14 | 70 | 57 | 1.5E-27 | ||
| PANTHER | 18 | 377 | 360 | 1.4E-218 | – | |
| PANTHER | 18 | 377 | 360 | 1.4E-218 | – | |
| CDD | 49 | 317 | 269 | 7.68359E-79 | – | |
| Phobius | 57 | 75 | 19 | - | – | |
| Phobius | 76 | 80 | 5 | - | – | |
| TMHMM | 78 | 100 | 23 | - | – | |
| Pfam | 78 | 332 | 255 | 2.0E-32 | ||
| Phobius | 81 | 99 | 19 | - | – | |
| Phobius | 100 | 110 | 11 | - | – | |
| TMHMM | 110 | 132 | 23 | - | – | |
| Phobius | 111 | 132 | 22 | - | – | |
| Phobius | 133 | 168 | 36 | - | – | |
| Phobius | 169 | 186 | 18 | - | – | |
| Phobius | 187 | 211 | 25 | - | – | |
| TMHMM | 212 | 234 | 23 | - | – | |
| Phobius | 212 | 233 | 22 | - | – | |
| Phobius | 234 | 238 | 5 | - | – | |
| TMHMM | 238 | 260 | 23 | - | – | |
| Phobius | 239 | 259 | 21 | - | – | |
| Phobius | 260 | 386 | 127 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. | ||
| Molecular function | Oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced to two molecules of water. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi6g1v0123500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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