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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0125100 |
| Transcript ID | LotjaGi6g1v0125100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT5G17600.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52; TrEMBL-Plants: tr|A0A1J7FMB9|A0A1J7FMB9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0125100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:32013682..32014394) extracted from Lotus japonicus Gifu genome v1.2.
CCTCTACACATATCTTTCATCTTTTTCACCTTCATTTGAATTCAACCTGCAGCCATCAAATATGGCCTCTGAATATCGCT ATACAATTGATGATCATCATTGGATCTTCAACAAGCTAAACAGCTCAAACTTCCACTCATATAACCAGGGCCTATTCCTA CTACTATGTTTTACTGCCATCCTCATCTTTCTCCCTTCATTGTTCCTTTGTATCCACTTTTGTCGTCGTCGCTTCTCGCA TCAACCGGCCACCACCATGGGGATTTCTCCTCTTCCAGATCAACAATGGGTTAAGGTTGAGTACAAAAGCCACCACACTA TGCTCCCTTCTTCAACCACCAAGAGCTTTAGCATAGTTGGTGGTGGTGCTGAGAAGAAAGAATGCTGCATATGTTTAGGT CTTTTCCAAGATAATGAAAGGCTGAAGGTGTTAACAGAATGTCAGCATGCCTATCATTCTGATTGTTTGGATATGTGGCT CAGTGCACATCCTAACTGCCCTCTCTGCAGAGCATCCCTCAATGTCAGTAATTGTCCTAAGAAATTCCCAGATGTTATTA ATTAGTGTTGAATCAGAGAATTTACACTGTCATTCATAGCTTATTCCGAGCATGTTTGGAAAAAATCTTGTGAAATTGAT TCTAAATTCAAAATTGACTCCATGGAGAAGCTATTATTAGATGACAACTGATTTATAAAAAAGAAGTTGATGC
CDS sequence (LotjaGi6g1v0125100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTCTGAATATCGCTATACAATTGATGATCATCATTGGATCTTCAACAAGCTAAACAGCTCAAACTTCCACTCATA TAACCAGGGCCTATTCCTACTACTATGTTTTACTGCCATCCTCATCTTTCTCCCTTCATTGTTCCTTTGTATCCACTTTT GTCGTCGTCGCTTCTCGCATCAACCGGCCACCACCATGGGGATTTCTCCTCTTCCAGATCAACAATGGGTTAAGGTTGAG TACAAAAGCCACCACACTATGCTCCCTTCTTCAACCACCAAGAGCTTTAGCATAGTTGGTGGTGGTGCTGAGAAGAAAGA ATGCTGCATATGTTTAGGTCTTTTCCAAGATAATGAAAGGCTGAAGGTGTTAACAGAATGTCAGCATGCCTATCATTCTG ATTGTTTGGATATGTGGCTCAGTGCACATCCTAACTGCCCTCTCTGCAGAGCATCCCTCAATGTCAGTAATTGTCCTAAG AAATTCCCAGATGTTATTAATTAG
Protein sequence (LotjaGi6g1v0125100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASEYRYTIDDHHWIFNKLNSSNFHSYNQGLFLLLCFTAILIFLPSLFLCIHFCRRRFSHQPATTMGISPLPDQQWVKVE YKSHHTMLPSSTTKSFSIVGGGAEKKECCICLGLFQDNERLKVLTECQHAYHSDCLDMWLSAHPNCPLCRASLNVSNCPK KFPDVIN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| PANTHER | 13 | 157 | 145 | 5.6E-35 | – | |
| PANTHER | 13 | 157 | 145 | 5.6E-35 | – | |
| TMHMM | 31 | 53 | 23 | - | – | |
| Phobius | 31 | 51 | 21 | - | – | |
| Phobius | 52 | 167 | 116 | - | – | |
| Gene3D | 71 | 156 | 86 | 1.0E-17 | ||
| Pfam | 106 | 150 | 45 | 1.8E-11 | ||
| SUPERFAMILY | 107 | 155 | 49 | 1.25E-17 | – | |
| SMART | 108 | 149 | 42 | 1.7E-5 | ||
| ProSiteProfiles | 108 | 150 | 43 | 12.194 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0125100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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