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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0125500 |
| Transcript ID | LotjaGi6g1v0125500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT3G16720.1 TOXICOS EN LEVADURA 2; Swiss-Prot: sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2; TrEMBL-Plants: tr|A0A072UY38|A0A072UY38_MEDTR RING-H2 finger ATL2-like protein, putative; Found in the gene: LotjaGi6g1v0125500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:32118814..32120887) extracted from Lotus japonicus Gifu genome v1.2.
ATGCACATAAGTCCCCATTTACCTCCTTGGATACAGGGATTTTCCTTTGACTCCAACTGCACCGTTTCCTCTAATAAAAT ACAAATCCATCAGAAACACAAACTTTTTGCTAACCATCACACGCAAATGTATCGTAGGCAACAGGCAACAACCCCTTAAA CACCCTTAATTTATTCCTTCCCCAAACTAACTTCACTTTCACGTAAACATTTTCACAAACACAAAAAGAGCAACCACCCC ACCATTCTGATCCACTGCACAAACCCAAAATCACCATCCCAAAACCCTTCAAGTCCAAATCTTTCTTCAAATTCTCAACA CCCTTTTGCCCATTCTTCACAATGCAATCCCAATTTGACTCACCCAATAACAACAACAATAACACTATGAACACACTGAG TCAAATGTTTCAGAACATTTTCTCAGACAACAGTAACATCATGCTTGCTGCTATCATTTCCCTGCTCCTAGTTATCCTCT TTGTTCTGCTTCTTCATCTCTATGCAAAATGGTTCTTAGCTCAGGCACATGTTCAGGCACAAGCACGCCGCCGCCGTCGC CGGAGAACCACCGTGACTGTCTCCGACGTGCTTGGCCCTGCACGGTTCCACCACTTTCACAGCTTCAACATTGAGGACTC ACCCTTGTCTAGCTGCCACACCAAAGGGCTTGACTCTGCTATTGTTGCTGCGATTCCCCTGTTCGTGTATGAAAAACAGA GCAAGGTGGAACAGGAACTAGAATGTGTGATTTGTTTGAGTGCTTTTGAGGATGGTGAAATGGGAAGGTGTTTGCAGAAA TGTGGACATGGGTTTCATGTGGAGTGCATTGACATGTGGTTGGGTTCTCATTCCAACTGCCCCATTTGCAGAGCTCCCAT TGTGGGTGGGGTTGTTGAGAATGATTCTTCTTCAGGGGATGATGCTTCTTCTGGTTTTGTTGAGATTGTGATTGGTGGTG GTTCAAGTTCTGAGATTAGAGAAAGTGAACCTGGGAATGAGAATTCAGGGGTGAGTCAGAGTGTGAGTGATTCTAGAACA GAAACTTCATCGTCCTTGTTTGGGTGTTCTTTGAAGACAATGCTGAGCAAAGTTTTCCCATCTTCCAATGTAAATGAATT GCAAAATAGAGATGTGAGTCATGTCAGTGTCTAGTTTAATACACTATTGAAAAATGAAATGAGCAACCTCAATTGCTTCT GCACACTGCACAGGTTGTTGTTTTGGCTTGGTTGTGAATCCTTCTGTGACATTGTTCTTGACCATGGAGACGCAAAGTTT TCTTCTTTCTTTCCATCCTCCTTTTCAAATTTCACATATTCTCTATCTACTTTTCAACTGGGGCCACTTTTTTGAACTTT ACTGTGCAAATGCATGTTTTGAAACCCTTCTGGTTCTAAAGTCAAAATCAATTTTAGAAAGAGTTTATGTATAGCTCATG AGAATCAAAATTGGGGGTGCTAGTGGCTGGTGCTACCTGCCCAGTGCTCTTCACATCATACCTAAGCTGATTTCTGGTCT AGAAAATCTTGTTATATTTACTAAATCTATACAGTTTTTAGCATCACTCTAGTCTCTATTTTTTTATGCTGAGAGAATTG TAGCTAACAGCAAAAAGTAGCATCCACTTCCATTCTAATCTAATGCTTCTTTTGAACATGGTAGTTTAGGTCTGGCTATG GGAGGTAGCAAGTGTGAAGACTAGTAGCTGCCTCAAAACCAGAGGAAAATGACAGAAGACAGCACTTAGTATAGTAGGAT TATAGGATACCACTTAGTAGTGCTGTGTTGGTCACTCATATGTCATGGTACACTCTTAACGGCAATTGATTGTTCTGATT TCTGAAGTGTAAAGTTGTGTTGTTTTCTGTCATGATCATGTAGTCCAAGAACATGTGTTGTCACTCAGATTAATTGCAGG AACCGAAGCAGTAGTGTTAAGCAGGGAGGGATGCCACTCCCACCAACACCAAGCATGTAAATTGGATAACTCCTTTCCAT TATATCTTTCCGAATCTGACAAGTCAGAGTCAATTAGTCATATGTTAATTTAAACGGCTCAAATACTCTGAAAG
CDS sequence (LotjaGi6g1v0125500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATCCCAATTTGACTCACCCAATAACAACAACAATAACACTATGAACACACTGAGTCAAATGTTTCAGAACATTTT CTCAGACAACAGTAACATCATGCTTGCTGCTATCATTTCCCTGCTCCTAGTTATCCTCTTTGTTCTGCTTCTTCATCTCT ATGCAAAATGGTTCTTAGCTCAGGCACATGTTCAGGCACAAGCACGCCGCCGCCGTCGCCGGAGAACCACCGTGACTGTC TCCGACGTGCTTGGCCCTGCACGGTTCCACCACTTTCACAGCTTCAACATTGAGGACTCACCCTTGTCTAGCTGCCACAC CAAAGGGCTTGACTCTGCTATTGTTGCTGCGATTCCCCTGTTCGTGTATGAAAAACAGAGCAAGGTGGAACAGGAACTAG AATGTGTGATTTGTTTGAGTGCTTTTGAGGATGGTGAAATGGGAAGGTGTTTGCAGAAATGTGGACATGGGTTTCATGTG GAGTGCATTGACATGTGGTTGGGTTCTCATTCCAACTGCCCCATTTGCAGAGCTCCCATTGTGGGTGGGGTTGTTGAGAA TGATTCTTCTTCAGGGGATGATGCTTCTTCTGGTTTTGTTGAGATTGTGATTGGTGGTGGTTCAAGTTCTGAGATTAGAG AAAGTGAACCTGGGAATGAGAATTCAGGGGTGAGTCAGAGTGTGAGTGATTCTAGAACAGAAACTTCATCGTCCTTGTTT GGGTGTTCTTTGAAGACAATGCTGAGCAAAGTTTTCCCATCTTCCAATTTTAGGTCTGGCTATGGGAGGTAG
Protein sequence (LotjaGi6g1v0125500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQSQFDSPNNNNNNTMNTLSQMFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYAKWFLAQAHVQAQARRRRRRRTTVTV SDVLGPARFHHFHSFNIEDSPLSSCHTKGLDSAIVAAIPLFVYEKQSKVEQELECVICLSAFEDGEMGRCLQKCGHGFHV ECIDMWLGSHSNCPICRAPIVGGVVENDSSSGDDASSGFVEIVIGGGSSSEIRESEPGNENSGVSQSVSDSRTETSSSLF GCSLKTMLSKVFPSSNFRSGYGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 32 | 32 | - | – | |
| PANTHER | 10 | 187 | 178 | 1.2E-58 | – | |
| PANTHER | 10 | 187 | 178 | 1.2E-58 | – | |
| TMHMM | 33 | 55 | 23 | - | – | |
| Phobius | 33 | 55 | 23 | - | – | |
| Phobius | 56 | 263 | 208 | - | – | |
| Gene3D | 110 | 182 | 73 | 9.7E-22 | ||
| SUPERFAMILY | 124 | 181 | 58 | 2.83E-20 | – | |
| CDD | 134 | 177 | 44 | 4.4554E-18 | – | |
| Pfam | 134 | 177 | 44 | 3.9E-13 | ||
| ProSiteProfiles | 135 | 177 | 43 | 12.475 | ||
| SMART | 135 | 176 | 42 | 5.1E-6 | ||
| MobiDBLite | 209 | 237 | 29 | - | – | |
| MobiDBLite | 212 | 237 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0125500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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