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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0132500 |
| Transcript ID | LotjaGi6g1v0132500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb family transcription factor family protein; TAIR: AT5G58900.1 Homeodomain-like transcriptional regulator; Swiss-Prot: sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA; TrEMBL-Plants: tr|A0A151U9Y9|A0A151U9Y9_CAJCA Myb-like protein J; Found in the gene: LotjaGi6g1v0132500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:38174879..38177866) extracted from Lotus japonicus Gifu genome v1.2.
GTAGTTGCGCTTCTTTCTTTCTTTTATTTTTCTGTGGGAAATTACATCATACAGCTGAGTTTCATTGACCAGCGCAACAA AGCTGAGACTGACTGAGAGCTTCCATCATTCATGATGTGCTGCCAATCCCCCTTTCTTTTAGCACTCCCAATCAAAAGAA GAAAAACTGAAGAAATGAATAAAGAAATTAGTATTTGCAAGTGTATGATGTAATTGTAGACTATTTAAAAATGATTAATT TCTTCATTGTTATTATTTTTATGAAAAGTGCACAGAAGCAGGGGGTGTCTACTCAATTATAATAAGAGGGAACTTTTTAT ATAGTTGCAGGATGCCAGGATCCACAAACACATAGCACCCAATCACAGCTCACCAGCTTCATGCACTGCTTTTCTGTTTT CTCCCTTGTTGGTTTCCTCTTTGAGAAGATAACACCAAAGTTTGTTTCAAGATTCATTCAGCTTGGTCACTTTGCTTTTT CAGCTTCCATTTATTTCCCTCTTTCTCATTAGGGGGTCTCCTATTCCTTTTTTTGTGCTTAGTTTGTGTACCATTAAATT TCTTTCCCTTTTCTTTGTTTCTCTGCTTCAAGGAAAAGGGAATAACAAATTTTTCTTTTCTTTTTTCTCCTTTGATACCA CATAAATTCTGAGTCTTTCTGCTGTTTCCTAATTGGGTTTGCACATTCATTGTCTTAGGCTCCTTCCCTTTTGCTCTGCC TTAGCTTCTAATTACTTTCCCAATTAGGTTAGGCTTAAGTTCAAGCTGCATAAAGAGTTGTCAGTTTTTTTCCTCTCAAA GTTGTCATTTCCCAGTTGTTATTCTTCTGTGTGTGGGGTATTTATTTTTCCTGGGTTTTTCTCTATCTCAGTTCTAGTAT AGTATCAGAGAGGGAAGTTCACTGGGTTTAGTTACAACTTACAAGTGGTTCTAGGGTTATCTTTTTGGACCAAATTAGAC AATAGTCTTGAACCTCAATTTGGAGCATTTTCTTTTGTAGATTCCTGAGGGGCATGCCACAAAAAAGGGTATTCTGATTC CTTTCCAAATGCTTGCTGATTTATCCTTGATGATGTTGTGGTAAAATCTCCACCTCTGCTTCTCATTTATCTCTGCCTCC CCTCTCTCCTCCCCTGAATCAACTCTGTTTTCCCATAAAGATTTAATCTTTCTAGTGAAATCTTCTCCTACATGCTCCTA TAGTTTGTGTTCCTATCTTGGGTGTGTGTGTATGTGATGAAGTGGGAAATGGAAATCCTTCCTCCAGCACCATATATTCA CAACCCCAACAATAGCACCAATTGGCTTCTAGAAGATAATAGGAACACCAAATGGACCCCTGCAGAGAACAAGCTGTTTG AAAATGCTCTTGCAGTGTATGATAAGGACACCCCGGATCGGTGGTACAGGGTGGCTGAGATGATACCAGGAAAAACAGTT GTGGATGTGATAAAGCAGTACAAGGAATTGGAAGTGGATGTTTGTAACATAGAAGCTGGGTTGGTCCCAATTCCTGGCTA CAGCAGCACTACCTCACCCTTCACCTTAGACTGGGTGAACACCCCTCCTGGGTATGATGGGTTTAAAGGACTCACTGCAA AGAGATCCTCTTCAGGCAGATTACCTGATCAGGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAGGAACACAAGTAAGCT TGTTTCTGATATCTTTTGCTTTTATTTCCAGATGTGTGAGTGAGTAAACAGTTTTGAAGATTTTACTACTTGGTGCATGT TTGGACATTCATTTGAAAATCAAAGTGGACAGCATGGACAGAAGCAAAAGCTAAGGGTTGTGGCTTCTGTCTGGTTTGAC TGTTTTTTGAACGAGTTTCCAAACATGCATTTAGTCATTTAAAATGCAAATCAGTTAGGAAAACTGGTGTAAGTGAGTAA AAAGTATATGAAGATTTTACTACTTGGTGCATTGGAAACTCGAAAATCAGAGTGAATTCATAATTAAGGTGGACAGAAGC AAAAGCTAAAGGAAACTGCTTCTGTCCAGCATAATTTGGGGTTCACTGTGTTTTTTAGCAAGTCATTTAAAATGCAAATC AGTTTTGAAAACTGGTGTAATAAGGAAAGCAACAATTAGTTGATGGTGTTGAAAGCTTATATACTTTATTTATGAACCTA GGAGTAATAAGAAAGGCTTTCATGTGGTAGCTATGGGTAGTTAGTCAAGTGAAATTGACATATATGATATTTATTTATGT GATTGGGTCTAAACCTGTTTGTGAAAATGTCACACAGGTTGTTTCTGCTGGGTCTGAAAAAGTATGGCAAAGGAGATTGG AGGAACATTTCAAGGAATTTTGTGATTACTAGAACACCAACTCAGGTGGCTAGCCATGCTCAGAAGTACTTCATCAGGCA ACTTTCAGGGGGAAAAGACAAGAGGAGAGCTAGCATCCATGACATAACAACAGTTAATCTCACAGAAACCACCAGAACAA CTCCTAATTCAGAAGACAGCAAGAGATCCACTTCACCACAGAATTCTGCGATGCTCTCCGGCCTCCGCGGCCCGGATTCG GCATCTGCTGGACTGCATTTTCAGTGGAACAATACTCAGCCAAATGCAGTACCAACTATAGCACCCAATCCTGTACATGA ACAACAATTCATGTCTCCTTATGGACTTAACTCCTATGGTTTTAAAATGCCAGGCCAGAATTATTACTTAGGACCTCAGA CCCAGAACATGGTTTTCCAAATGCAATCCTCTTCTCAGCACTATTAACATGCATGATGGGGTGGTTGGTTGTATTGAATT ATTATTTATGGCTAGAACCCAGTGTCTTTTGGTTCAGTTCACAAGTAGTACAGTGTTTGTGCTTTTTTACCAAGTTCTAT GTGAATATATCCTTGCATTAGAATATTAGTTAGTTATATATGATCTTGTTGAAGGAAGGTATAGAAAATTTGTTTCTTTA ACAACCTTAAACTCACCAAAAGGTAAAA
CDS sequence (LotjaGi6g1v0132500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTGGGAAATGGAAATCCTTCCTCCAGCACCATATATTCACAACCCCAACAATAGCACCAATTGGCTTCTAGAAGA TAATAGGAACACCAAATGGACCCCTGCAGAGAACAAGCTGTTTGAAAATGCTCTTGCAGTGTATGATAAGGACACCCCGG ATCGGTGGTACAGGGTGGCTGAGATGATACCAGGAAAAACAGTTGTGGATGTGATAAAGCAGTACAAGGAATTGGAAGTG GATGTTTGTAACATAGAAGCTGGGTTGGTCCCAATTCCTGGCTACAGCAGCACTACCTCACCCTTCACCTTAGACTGGGT GAACACCCCTCCTGGGTATGATGGGTTTAAAGGACTCACTGCAAAGAGATCCTCTTCAGGCAGATTACCTGATCAGGAAA GGAAGAAAGGTGTGCCATGGACTGAAGAGGAACACAAGTTGTTTCTGCTGGGTCTGAAAAAGTATGGCAAAGGAGATTGG AGGAACATTTCAAGGAATTTTGTGATTACTAGAACACCAACTCAGGTGGCTAGCCATGCTCAGAAGTACTTCATCAGGCA ACTTTCAGGGGGAAAAGACAAGAGGAGAGCTAGCATCCATGACATAACAACAGTTAATCTCACAGAAACCACCAGAACAA CTCCTAATTCAGAAGACAGCAAGAGATCCACTTCACCACAGAATTCTGCGATGCTCTCCGGCCTCCGCGGCCCGGATTCG GCATCTGCTGGACTGCATTTTCAGTGGAACAATACTCAGCCAAATGCAGTACCAACTATAGCACCCAATCCTGTACATGA ACAACAATTCATGTCTCCTTATGGACTTAACTCCTATGGTTTTAAAATGCCAGGCCAGAATTATTACTTAGGACCTCAGA CCCAGAACATGGTTTTCCAAATGCAATCCTCTTCTCAGCACTATTAA
Protein sequence (LotjaGi6g1v0132500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKWEMEILPPAPYIHNPNNSTNWLLEDNRNTKWTPAENKLFENALAVYDKDTPDRWYRVAEMIPGKTVVDVIKQYKELEV DVCNIEAGLVPIPGYSSTTSPFTLDWVNTPPGYDGFKGLTAKRSSSGRLPDQERKKGVPWTEEEHKLFLLGLKKYGKGDW RNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTRTTPNSEDSKRSTSPQNSAMLSGLRGPDS ASAGLHFQWNNTQPNAVPTIAPNPVHEQQFMSPYGLNSYGFKMPGQNYYLGPQTQNMVFQMQSSSQHY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 304 | 298 | 2.5E-138 | ||
| PANTHER | 7 | 304 | 298 | 2.5E-138 | – | |
| Gene3D | 26 | 92 | 67 | 1.1E-19 | – | |
| ProSiteProfiles | 28 | 83 | 56 | 8.721 | ||
| SMART | 29 | 81 | 53 | 3.6E-8 | ||
| SUPERFAMILY | 31 | 85 | 55 | 4.04E-11 | ||
| CDD | 32 | 78 | 47 | 1.58217E-7 | ||
| Pfam | 32 | 76 | 45 | 1.4E-5 | ||
| ProSiteProfiles | 132 | 188 | 57 | 20.486 | ||
| SUPERFAMILY | 134 | 187 | 54 | 8.22E-17 | ||
| TIGRFAM | 135 | 187 | 53 | 1.5E-17 | ||
| SMART | 136 | 186 | 51 | 5.3E-13 | ||
| Gene3D | 138 | 188 | 51 | 1.1E-17 | – | |
| CDD | 139 | 184 | 46 | 1.43029E-11 | ||
| Pfam | 139 | 183 | 45 | 1.6E-12 | ||
| MobiDBLite | 207 | 235 | 29 | - | – | |
| MobiDBLite | 207 | 239 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0132500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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