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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0139200 |
| Transcript ID | LotjaGi6g1v0139200.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Uridine kinase; TAIR: AT1G55810.1 uridine kinase-like 3; Swiss-Prot: sp|Q8VYB2|UKL3_ARATH Uridine kinase-like protein 3; TrEMBL-Plants: tr|V7BNR6|V7BNR6_PHAVU Uridine kinase; Found in the gene: LotjaGi6g1v0139200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:40438329..40445837) extracted from Lotus japonicus Gifu genome v1.2.
GTCGAAAGTAGTCTAGGCCATGAATCTTTATTGAAAAAAAAAACAATTGAAAAATATTATCTTACGTGGTGGAAGATAAC TTTAAGAAAAAGAATGCAGAACTAAGGTAGGTGAAAGTGATAAATTTGTAGAAAATAGTAAAATACAGGGTCCATTTATC CAATTTTCCAACCACGAGTAGATATAAACCAAACCGATATAAAGAGACAACACATAAGCTTTCGTCAATGTAATGTGTAC GTGTAGTTGACATGTACATACACTCCGTACTCTGTGTCTCTCTGCAATAACTCTCACCTTCTTCAATTTCAGTTTTCTTC TTCACACAAGTTCTTGTGTTCACTTCACCAGGTACGTTTTGGAACCAACACCCTTTGACTGTTCGGTACAGCAATCCTTA CTATGCATTGCTTGGTTTTTGTTTGGGATTCTATTTTGATCAAATTTCCAATCTTTTTTATTTATTTTTCTGTTTCTTAT TGGATCTGGAAAACCCATTTGAGTACTAAGGTTGTGGTTGCTGGGGTGTGTGTTATTTGTAAAGTGTTGAAGTGGGTGAG CATAAAGTTGGATTTTTTGTAATTTCTCTTTTTGGCGTTCTAGTTGCATTTGAAGGAGCTTGCTGTTTTGTTTTTGTCTA TGATGTTTTATTCACTTGGTTCTTGTAACTGGAAAATCATTGTGGACTACTACTTTGCTGGGAGGATTGTCATGAACTAC TATGATCAATTGATAGTTGAATATATCATATATGATGCTTTGGACTACTTTGTTTGATACTGATAGATAAAGGGAAAATG AAGTTGGGTTTAAATTTGTGTGTTTTACTTAAAGAATTTGAGTGTTTTGTCTAGTTGTAAAGTTGTGGTGAAGATTTAAG ACTTGGGAGGTCTCAGAAGCCTTTGCAGTATTTCCTAATTCCTAGGTGTGCTTTGAGCAGCCTCATTTAATTTTTACCAT AGCCTGTGACCATGTATTGTAAGAAAATTACCAGAGCTTGAATGGGTTTTCCACAATATCTCAATGTGCAATGGCTCCGG AAGACAAAGAAGTAGCATGCTACTTCAGGCTAGTTTAGTCAATGTCAATGAATGGTTGTTTATCAGAACTGAATTGTAAC CTAAAGCACGAAAGAGTGAAATGTTTTACTTGATTCAATCAAACACATTGGCAAGCTGTGTATGAACTCTCCGTAATGTG AATGCTTTTACATGGTTCCAAGCTATGTATGAACTCTCTGTATCCAGATTTATTTCTCTTATCTTCATGATTTTTAACCG TTTTATTTCCAGGTCTTTGCCAATGAATGCTAAGTCAGCTTTAGATTTAATGGAGTCTTCATCAGAAGTTCATTTTTCGG GATTTCACATGGATGGTTTTGAGAAAAGAGAGGCCAACACTGAACAACCAACAACATCGGCAACTGACATGTATAAACAA CCTTTCATAATAGGTGTGTTTTCTTATGGCTAGCAGCTAAAGTATTAGTAGTAGTAGTAAAGTCACCACCAACTACCTAT TTGGGTCCTTAGAGGTGCTAGAGACTATAAATCATAAATGGATTGGGTTCTGTTCTGCCAAAGAAAATGTTACCAGCTCT GTTCTTTTTCACTTTGGATGTATTTCACATGAGCCATTAAGTTGTGTTGACTGTTGAGTGTACTTGAATAAAATTCCTGT TGAAGAGCACCACAGAAAAATAACCTAACCGAGGTCTGAATTTATGTTCAACACAAGTTTAGTTGAAATAATAGAATTTA TTTGCTGGAAATATATGTTTCTTTGAAAGAAAAATAACCTACTGAGGTCTGAATTCATGTTTGCAGTGAAAAGAAATACT TGAGCTTTTAACAATTTACATGAAATTAAATTACTTAGCAGTTTATAGAGGTGTTCATATGCTAACATCATAATTTCATT TCACCTTATATCCCATTACACTGTCATTTTATGCTACAAATTCTGTCAACTTATATATCATCTTATGTTTATAAAGTAGA GCTTCCTGCACAATAAGTTAGGATGCCTTGTTTTCAATCTCATAACTTGTTTCATCTTAATGATTCTAATTTTATTTTCT AATTTTTGTTTTATGCTACAGGTGTTGCTGGGGGTGCTGCATCTGGCAAGAAAACAGTTTGTGACATGATTATTCAGCAA CTTCATGACCAGCGAGTTGTCCTTGTTAATCAGGCAATGCATTCTTCCTATTTATACTTGCTGGTGGTCTAATTGAGAAT GTATTATGATTTACTGTTTGTGACTCAAAATGATCATCGAGGCAAACAATCAGTCGGTTAGTTCTTCAAGCCTCTAGCAT CCTGTTCTCTAAGGAAAACAATCAGTCTTTTACTATCTTTATTTTCAATTTTATGGTAAAATAGACACCTTGACACCATA ATGCATCACCCTCTTTTTTTATGATTAGTTTTGATATTGTGTCTTGCTTCTGCCAAACCTCCTCTTGTATTAATAATATT TACCTCTTTTTCTCAAATTTCCCTTCAAAATGTCATAATATGAAGTTTGTATACCTTTATTTTGGGTAACATAGTTGAAA AATATTCTGAATGTCTTTTCTTTATCATTCATTATATTTTCTTTTCTCCCCCCCCCCCCTGGTTTATCACTTCTATTAAT TGTTTCTTTCTTCAGTTTGTGTTATTTATCTTTTCTGGATCATATTTCAAAGTATGGACTAAATGTTTCTTATTGCACGT CCTGATACATTTGGGCTTAATAGATAAACTAATTTATTTATGACAGGATTCCTTTTACAATAACTTGACTGAGGAGGAAG TTACAAGAGTGCAGGATTACAATTTTGACCATCCTGGTCAGTACAATTATACTTATTCTATTCTTATTCTTGACTTTCTC TTAATATCAAGATATTATGAACGATGTCCTCTTTCTTTAGTTCTATTTATTGGAAAAGTTGTGAATCTGTTTTTCCGAAA ATGCATTTTGAGGATGAGGTTCCAAACCCTTTAATAGTTCTCATGTTCCAGCCAACCAATTATGAACACATTAGCACAGG ATTGTACATAAAATTTGATGGTTTAGCAAGATAAGGAAGAATGGAAGATATATAACATTTTAATTTTCTTAATGGCTATG TGATTGTTTTGTACTTCTGTTATTATATCATCAGATGCTTTTGATACTGAGCAATTGCTACTTGTTATGGACAAGTTGAA GCGTGGCGAAGCTGTAGACATCCCGAAGTATGATTTTAAAAGTTGCAAGACTGATGTGTTAAGAAGGGTATATCTCTAGA CTTCCTTGTTTAATTATCTCTATACCCTTTGTTTCTTAAAATGCTTAACAGCTTAAGATTGAAATTCTAATTTTGAAGTT GTGAATATCATGCAAAAGAATAAATTTGTTATTTTTTTCTGCATATAGAAAGTATAAAATATATGTGCATGATTATCCAA ATGCATATCTCAAACACAGTGTTGCATGCGAAATTGTTGTCATTATCATTACATTTTATATTCCTTTAACCTGTTTTCAG GTAAACCCTTCAGATGTTATAATTTTGGAAGGGATCCTTGTTTTCCATGATCCACGTGTTCGGGAGTTGATGAGTATGAA GATATTTGTTGACACAGGTCCTTTATTGTTGTTGCTCTACCTTTGGCTCGGAATTAATTTTATTATATGTTCGAGATTTT TGTTAGATTCATTTTCTTTCATCTCTTTGAACTAGTTCACCCTCCCCCTTCTTTTCATAAGCCACATTGTGATATAAGAA AATCACATGCTGAATTGTTCCTTGTTATTTAAAAAAAAAATGATTTTTTTGTTTGCATGGGTTGGGGTGGATATGCTATT GAGTCTATGACACTTTGACCCTATATCTTCAAATTTGTTACTTTTTTTTCATTTATTTGTCAGTTCTATATTATTATTAA ATTGTTTCTTATGCGTACCTTCTATAATAAATTTATAAGCCTGTTCATTTTCTGTGTTGTTGTTGGCACACTAAGTTAAG CTGTCACTTACCATTTCTAAAAAATCAGTGCAGATGCTGATGTTCGTTTGGCAAGAAGAATTAGGCGTGATACTAATGAG AAGGGTCGGGATATTGGAACTGTTCTTGATCAGGTAGCAATTTTTTGCCACACCATTTGTGCCACCATTAGCATGCTTTG ATTATCTCTTGCTTCTTTTTCAGATTGATCATATTTACTTCATTGCATGACTTGAGAAATGTTATTGTAGTTTCACGCTG TTGATCCGCTACTATTTAAATTCCTTAAAGATGAAACCTATGATTATTCAGTATTTTTGTGGAATTAAATCATTAAGGAT TGATTTGTATAATATCGGTGAAACACACATATTTTTATCAGATTTCAGTAGTTAATTTATTTGATCTTGATAGATATGGC AGCTGATTCTTATGTTATACTTGTTTCAGTATTCAAAATTCGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAG AAGTACGCTGATATAATTATACCCCGTGGAGGAGATAATCATGTGGCCTGTGATTTGATTGTACAGCATATCCGCACAAA GCTCGGTCAGCATGACCTTTGTAAAATATATCCAAATTTGTATGTAATTCAGACAACTTTTCAGGTACCCATTTCACTTG CAACTTTTTTAACTTTCCAGTTATCCCACCAATAGCTTCAAACTTGGAATCATCATTATAATGCTTCTATGTAGATACGG GGAATGCATACTCTGATCCGTGATGCTCAAATAACAAAGCATGATTTTGTATTTTATGCTGATCGTTTGATTAGATTGGT AAGTAAACGCAGCTCATTTGAACACGGAAACTTTCTTACATTATTAATAATCATAATTCGCACGATTGACTAGGTTGTAG AACACGGCTTGGGGCATCTTCCCTTTACAGAAAAGCAAGTTATCACTCCCACGGGTAACCTTTTCTTTTCCAGTACTTGC CTTGTAAGATTATTTTGATATGCAAGTTTTGTGTGCTGTTTCCTATGCTGATCCTAGCAGCTAAAGGTTTTAACTGAATG AGCTAAATACCTTAGTTTGTATCATATTGCCTTGACAGATGATTTGTCCAAAATTTTCACTGTATATATCTTGGATAATG TGTATATTGGGTACCTAGTTTCTTGCATTCTGTCATCTTGTTCCCAAATTTGAGAAATACAAGAGTTACACGTTCTTAGT CATGCACTTTTTTAACTTCCATGTCAAGGAGCTTTTCTTGATAGATTGGGTACCAAATGTTTATTATGTTATAGAACTTG AGAGAGAAAATATTTGCTTTCCATGTTGTTAATTACAGCAATTACCATGCTGAACTAAGCTTTTACATCTGTCTCCATGT AGTTTTCATTCTTATTCTTCAACTTATATAATAGAGTTACTTTGTTTCATGTATAACCATCTTATGGTAACTGTTGATGC ATGTCCTCAAAATGCAGGTTCTGTATACACTGGTGTGGATTTTTGTAAGAGATTGTGTGGTGTCTCTGTCATCAGGAGGT ATTAGCCAGTCCAAAGCTGGAGTTACAACTCACATGGCCATTTGAATATTAGATTAAACATTTTTATCCATGCTTCAAAG TATTGAATAACATGTCTTCTCTTAATAGATAATTAGATATGATATAATTCAATAAATAAAGGAAAGATCCATTGTTGATT TGGATTTAGAAGTACCAAATTCATTAGATTGCATATGGTGGCATTTTTTTTTTGCCTCGGAATTGTAATAAACCTATCCT TGTTAACTAGATCCTTCCTCCTCCCTCCTTGGTTTGATGTGAAGTTACATCTCTGCAGTTTATAATTTATTGTTTAGCAA AACACTTTCCTTTATCCTATATGATATTCTACAAATTTCAGTGGGGAGAGTATGGAGAATGCTTTAAGAGCTTGCTGTAA AGGTATCAAGATTGGGAAAATTTTAATTCACAGAGAAGGTGACAATGGTCAGCAGGTTTGTCCATCTGCACGTATGCTTT GATGCGTATCATGTTTCATTTTTTCATCACTGACTTCTTATCCTTTAATCAAATGAACAGCTAATATATGAAAAGTTACC AATGGATATCTCAGACCGGCATGTGTTGCTGTTGGACCCTATCCTCGGCACAGGTTTGTTATTCTCTTGTTTGTCGTCAC CCTTGTTCTGAAGTTTCAAGTGTCTGCAGACTATTGCAACTTTATTATAGCTACAAATTAATTAGTATAATGAGAGTGGA TTGAAAATTGTTTTTTTGTTTGCTGATTTTCATGTTTAGGTAATTCGGCTGTTCAAGCAATTTCTTTGCTTATAAGAAAG GGTGTACCAGAGTCCAACATTATATTTCTTAATCTCATATCTGTAAGTTGACAGTGCCTTAATCTCTCTATATGTCTTGC TCTTTTATTGAATTATGAATGTTTTTCCCTTGCTTCTTTTTTTGATGAGTTGCATTTATCTTCTCATGTTCAGGCTCCTT TAGGTGTGCATGTGGTATGCAAAAAATTTCCAAAAATTAAAATAGTGACATCTGAGATTGAGATAGGTTTGAATAAAGAT TTCCGTGTCATACCGGGCATGGGCGAGTTTGGCGATAGGTACTTTGGAACAGATGATGATGAACAACTGGTGGTTCCTTC CCAGTAGTTACACCTTGGGGGCGAATTCCACAATATTTTAGGTTGATTGTTATTATTATTAATGAGAGATTCCTATGGAA GTATGATAGAATTTGCTCAATCACTATTATGCTGGACATCTGTCTTTTAGTTCAAAATCAATTTTTACTCTATGGAGCCT TGGATCACCATTTCATTATCCTTTTGTTGTGTATTTTATAAAATGGCATGTGGATGCTCCAATGATTATTTCATCTTACC TTTTACTTCCACAATTGTTCTATGGTGGGAAGTTCCATAATCATTTCTTGAGAGAAGTTTCGGAGTATCACTTATGGGGT TACCATGTTTAAGATTATGTACTCACCTCCAATCTAAACACTAGAAGAGGATGGTGGGTTAGAGCTTTCGACAAAATGGT TGATTAGTATTAATGAGGTGGCTGAAATATTATTAATAAGCAATAAGCTACTACTCGCTACTGAGAGGGATTTTTCTATG CAAGGGTGATATTAAGCCTTCATTAGAGTTACCCCCTTGACACCTATTGTCTGTAACTTGAAACAAAGTCTCTGATGTAT ATTTCTTAAAATTCATGCTAAGCTTAACCCTACTTTAAAAAGCTTGGTTTAGGGTTGATTTACCCTTTTATTAAAACTTC GGTCATATTTTTATAATATGGAACTTATTGACACACTTTCACATCCAGAGATGGATATTTCATGGGGGGAATTTGCAGGA CTGGACATGTGACACCCTGACTTACTCTTAGTCTATAGTTTGAAATAATAATCAGCCAAAAACTGAGATAAATAAAATTA CATAAGATGTTCAATGTAAATAATGACATTAGTCTGTTTCTTCTTTCAAATAGATCGATCACGTGACAT
CDS sequence (LotjaGi6g1v0139200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAAGTTGAAGCGTGGCGAAGCTGTAGACATCCCGAAGTATGATTTTAAAAGTTGCAAGACTGATGTGTTAAGAAG GGTAAACCCTTCAGATGTTATAATTTTGGAAGGGATCCTTGTTTTCCATGATCCACGTGTTCGGGAGTTGATGAGTATGA AGATATTTGTTGACACAGATGCTGATGTTCGTTTGGCAAGAAGAATTAGGCGTGATACTAATGAGAAGGGTCGGGATATT GGAACTGTTCTTGATCAGTATTCAAAATTCGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTACGCTGA TATAATTATACCCCGTGGAGGAGATAATCATGTGGCCTGTGATTTGATTGTACAGCATATCCGCACAAAGCTCGGTCAGC ATGACCTTTGTAAAATATATCCAAATTTGTATGTAATTCAGACAACTTTTCAGATACGGGGAATGCATACTCTGATCCGT GATGCTCAAATAACAAAGCATGATTTTGTATTTTATGCTGATCGTTTGATTAGATTGGTTGTAGAACACGGCTTGGGGCA TCTTCCCTTTACAGAAAAGCAAGTTATCACTCCCACGGGTTCTGTATACACTGGTGTGGATTTTTGTAAGAGATTGTGTG GTGTCTCTGTCATCAGGAGTGGGGAGAGTATGGAGAATGCTTTAAGAGCTTGCTGTAAAGGTATCAAGATTGGGAAAATT TTAATTCACAGAGAAGGTGACAATGGTCAGCAGCTAATATATGAAAAGTTACCAATGGATATCTCAGACCGGCATGTGTT GCTGTTGGACCCTATCCTCGGCACAGGTAATTCGGCTGTTCAAGCAATTTCTTTGCTTATAAGAAAGGGTGTACCAGAGT CCAACATTATATTTCTTAATCTCATATCTGCTCCTTTAGGTGTGCATGTGGTATGCAAAAAATTTCCAAAAATTAAAATA GTGACATCTGAGATTGAGATAGGTTTGAATAAAGATTTCCGTGTCATACCGGGCATGGGCGAGTTTGGCGATAGGTACTT TGGAACAGATGATGATGAACAACTGGTGGTTCCTTCCCAGTAG
Protein sequence (LotjaGi6g1v0139200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKLKRGEAVDIPKYDFKSCKTDVLRRVNPSDVIILEGILVFHDPRVRELMSMKIFVDTDADVRLARRIRRDTNEKGRDI GTVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVACDLIVQHIRTKLGQHDLCKIYPNLYVIQTTFQIRGMHTLIR DAQITKHDFVFYADRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKI LIHREGDNGQQLIYEKLPMDISDRHVLLLDPILGTGNSAVQAISLLIRKGVPESNIIFLNLISAPLGVHVVCKKFPKIKI VTSEIEIGLNKDFRVIPGMGEFGDRYFGTDDDEQLVVPSQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 350 | 350 | 4.9E-220 | – | |
| CDD | 1 | 130 | 130 | 5.96111E-68 | ||
| PANTHER | 1 | 350 | 350 | 4.9E-220 | – | |
| Gene3D | 1 | 133 | 133 | 2.9E-40 | – | |
| SUPERFAMILY | 3 | 123 | 121 | 8.53E-25 | ||
| Pfam | 3 | 118 | 116 | 1.9E-33 | ||
| PRINTS | 7 | 22 | 16 | 1.4E-15 | – | |
| PRINTS | 62 | 72 | 11 | 1.4E-15 | – | |
| PRINTS | 76 | 87 | 12 | 1.4E-15 | – | |
| PRINTS | 98 | 111 | 14 | 1.4E-15 | – | |
| SUPERFAMILY | 133 | 350 | 218 | 1.21E-58 | ||
| Gene3D | 134 | 349 | 216 | 5.6E-82 | ||
| Pfam | 148 | 349 | 202 | 8.4E-71 | – | |
| CDD | 207 | 322 | 116 | 4.38441E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Nucleoside metabolic process | The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). | ||
| Molecular function | Kinase activity | Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. |
Expression pattern of LotjaGi6g1v0139200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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