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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0142900 |
| Transcript ID | LotjaGi6g1v0142900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 4-coumarate:CoA ligase-like protein; TAIR: AT1G62940.1 acyl-CoA synthetase 5; Swiss-Prot: sp|Q9LQ12|4CLL1_ARATH 4-coumarate--CoA ligase-like 1; TrEMBL-Plants: tr|A0A151S4W7|A0A151S4W7_CAJCA 4-coumarate--CoA ligase-like 1; Found in the gene: LotjaGi6g1v0142900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:41248351..41251692) extracted from Lotus japonicus Gifu genome v1.2.
CATGACTAGAAATTTCCGTATATATAATCTCACATGCCTTGCCAATTGCCAATCTACTCATACTCCAACATGGGAACATC CATGGAAAATTTTGCAAATGAGGAGGAACACATCTTTCGTAGCCAATATTCACCTGTTCCTATTCCTGACAATGTTACAT TACCAGAATTTGTGCTTCAAAATGCTGAATTATATGCTGATAAGGTTGCATTTGTGGATGCTGTCACTGGAAAAGGGATC ACTTATAATGAGGTGGTCAGAGACACTAAGAGGTTTTCAAAGGCATTGAGATCTCTTGGTATAAGAAAAGGGAATGTTGT GATTGTAGTACTTCCAAATATACCTGAGTATGCCATTGTTGCTTTGGGGATCATGGCTTCTGGTGGTGTCTTCTCAGGGG CAAATCCAGCATCACATACATCAGAAATTAAGAAACAGGCAGAGTCTGCTGATGCCAAATTAATTGTCACAAATAGCTCA AGCTATGATAAGGTAATTAATTGCTCATAATGTGCTTTCTTTTGGTTGGCTTTTTAAGTAACTTAAATTAATCGTGTCCC CAAGTTGCCTCATTTGGTAAGGACGAATCACTTCCTCTCAGAAGGTTGTGTGTTTGATTCCCGCTACTAATGCGAGGACT GTATTAGTAGGCAATCTGTAAGTACCTCTGTAAGCGACCTATGGTCTGAGAGGCTGCCTGGCCCAAACTTCTATTCATCT AAAAAAACATTAAGCATGTTAGACTGTATATACTTTATATAGCATTTGATTTTGAGACTTATTGAGTTGAAAATGAAACA GGTGAAAGGCCTAGAAGTACCTGTTGTTGTGCTGGGAGACGAAGTTGTTGAAGGTGCCATGAATTGGAACAAACTGCTAG AAGCAGCAGACAGAGCAGGTGATGATATGATAAGGGAAGCTGTTAACCAGAATGATCTTTGTGCCATGCCATTCTCTTCA GGCACCACAGGGATGTCAAAGGGTGTGATGCTCACTCACAGAAACCTTGTAGCTAATCTTTGCTCCACGCTTTTCGGCGT AGCGCCGGAAATGGTGGGTAAGGTCACCATACTAGGCCTAATTCCCTTCTTTCACATCTATGGCATCACTGGCATATGCT GTGCCACTCTTAGGAACAAAGGGAAAGTTGTGGTGATGGGAAGATTTGAGCTGAAAGCATTTCTCAATGCCTTGATCACA CATGAGATCACATTTGCACCCATTGTGCCTCCAATCATTCTCAGCTTGGTGAAAAATCCCATTGTAGATGAATTTGATCT CAGCAAGCTTAAACTCCAGGCTGTTATGACTGCAGCAGCACCACTTGCACCAGAACTCCTAACAAACTTTGAACACAAGT TCCCTGGTGTTCTTGTTCAAGAGGTGGGCGAGTCATCCTTCTATAGTTTTGCTAGTTCACTGATATCATGTTTGGATCAG CTTCTATTTCTTTATAATCATTTCTGACACCTAAATAGAACAAGCTTCTCCCCATAATTGATTCTGACTTCAGAATCAAT TGTGGAAGGGTTTTGAAACATGCACTAAGGCTTTTAATTATATTGTGCAACTTGTGCATTTGGTATGGTATATGTTCCCT AACTGATAGTTTTTTTTTTTTTTTATTATTGCAGGCGTATGGACTAACTGAGCATAGCTGCATCACACTCACCCATGCAC AAAAAGGGTTGGGGAGTCCACATAAAAATTCAGTGGGGTTCATCCTCCCAAATTTGGAAGTCAAATTTGTTGATCCTGAA ACTGGTAAATCCCTCCCAAGGAACACACCAGGGGAACTCTGTGTAAGAAGCCAATGTGTGATGCAAGGTAATGGAGACAC AATCTTCCCCAAAAAGAAAAAAAAAAGTGTGAAGTTATGATAAATTATATTATGAATGCATGTAACACTGACAAGAATGG ATGGCTATAAACATATTATGAATGCATGTAACACTAACAATCTCAATCTGTGTCTTTTCCAGGTTACTATAAACAGGTGG ATGAGACTGCTCAGACCATTGACAAGAATGGATGGCTTCACACTGGTGACATAGGATTCATAGATGATGAAGAGAATGTT TTTATTGTTGATCGTATCAAGGAGTTGATTAAATACAAAGGCTTCCAAGTAAGTTCTTGTTGTTTCACTTTCAAATGTTC AGATCAAGGCTCTGCTTATCAATCCCTACTCCCTAACTCAATAAACAGGAAAAACAAATCACTTGAAAGGCTAAGTTGGA ATAAAATGTGATTTATAAAACATAATTGCAACATTACAAGCACTTGTAGAATGTTTGTCTGTGAAAAAGGATAAGTAACA TTCCTGGTGCAAATTTTGTTTTGCTGCTGAGATTTCTACATCTCTTCATCTGGTAAATCAGAATCACCATGATTGAGAAC TTAAAGGGAGGTCAGTTAATTTATTCATAATATTATGATCAATTTAGAAAACAAAAGGAGATTAAAAAGCCAATTAAAAT GAAAACTAGGAAAAAAATGTACACAACATCTGCAATTCATGCATTACTAAATTGTGTTAAGAAGTTGGTCAAAATGTGTA GCATTTTTTTGTCAGGAAAGTTTTGGATATCTAAGAGTGCACAAATTAATGGAGCCTAAGGGTTCGTATTCCCATGTATA GGCCAAGATTAGTTGATGTCTTTTTGGACAAGTGCAGGTTGCTCCTGCAGAGTTAGAGGCTATTTTGCTGTCTCATCCCT CAATTGAAGATGCTGCTGTTGTGTCGTAAGTAACGAACCATAATCTTTGACATTCTTGTTAATCTTACACTTATTGGGAT TTCAGATTCTAAAAGTCTTTGCAATCTAATATTTTTGACATTCTTGTTATCTTACACTTATAATGGTTGTTCAGATTACC AGATGAAGAGGCAGGGGAAATCCCAGCTGCAAGTGTTGTTTTGAGCCTTGGTGCCAAAGAGAGTGAAGAGGACATTATGA ACTATGTTGCCTCCAATGCTGCTAGTTACAAGAAAGTGAGAGTGGTGCACTTTGTGGAATCCATACCAAAATCACCATCT GGGAAAATAATGAGAAGGCTTGTCAAAGAGAAGATGGTGGAAAAGATGAAGACAAATTCCACAACTAAATCCATCACTCT CTAAATCAGTGGAAAATAATGTAACCTTTGCTTTGATATTTCATGCTTCTTCATCTAGTTAATCTGTGTTGCACTGCTAC TAAGAGAGTGAATTTTTATTTTAGTACATGTTGGAAGTAATATCCGAGAATAAAATTTGGTAATTTTATTGTTGCCCTTG TTGTTGTGATACTTATTTTAATTATTTTTTTGTTAAATCACTCGATCAGTATCCAATCACCC
CDS sequence (LotjaGi6g1v0142900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTGCCAATTGCCAATCTACTCATACTCCAACATGGGAACATCCATGGAAAATTTTGCAAATGAGGAGGAACACAT CTTTCGTAGCCAATATTCACCTGTTCCTATTCCTGACAATGTTACATTACCAGAATTTGTGCTTCAAAATGCTGAATTAT ATGCTGATAAGGTTGCATTTGTGGATGCTGTCACTGGAAAAGGGATCACTTATAATGAGGTGGTCAGAGACACTAAGAGG TTTTCAAAGGCATTGAGATCTCTTGGTATAAGAAAAGGGAATGTTGTGATTGTAGTACTTCCAAATATACCTGAGTATGC CATTGTTGCTTTGGGGATCATGGCTTCTGGTGGTGTCTTCTCAGGGGCAAATCCAGCATCACATACATCAGAAATTAAGA AACAGGCAGAGTCTGCTGATGCCAAATTAATTGTCACAAATAGCTCAAGCTATGATAAGGTGAAAGGCCTAGAAGTACCT GTTGTTGTGCTGGGAGACGAAGTTGTTGAAGGTGCCATGAATTGGAACAAACTGCTAGAAGCAGCAGACAGAGCAGGTGA TGATATGATAAGGGAAGCTGTTAACCAGAATGATCTTTGTGCCATGCCATTCTCTTCAGGCACCACAGGGATGTCAAAGG GTGTGATGCTCACTCACAGAAACCTTGTAGCTAATCTTTGCTCCACGCTTTTCGGCGTAGCGCCGGAAATGGTGGGTAAG GTCACCATACTAGGCCTAATTCCCTTCTTTCACATCTATGGCATCACTGGCATATGCTGTGCCACTCTTAGGAACAAAGG GAAAGTTGTGGTGATGGGAAGATTTGAGCTGAAAGCATTTCTCAATGCCTTGATCACACATGAGATCACATTTGCACCCA TTGTGCCTCCAATCATTCTCAGCTTGGTGAAAAATCCCATTGTAGATGAATTTGATCTCAGCAAGCTTAAACTCCAGGCT GTTATGACTGCAGCAGCACCACTTGCACCAGAACTCCTAACAAACTTTGAACACAAGTTCCCTGGTGTTCTTGTTCAAGA GGCGTATGGACTAACTGAGCATAGCTGCATCACACTCACCCATGCACAAAAAGGGTTGGGGAGTCCACATAAAAATTCAG TGGGGTTCATCCTCCCAAATTTGGAAGTCAAATTTGTTGATCCTGAAACTGGTAAATCCCTCCCAAGGAACACACCAGGG GAACTCTGTGTAAGAAGCCAATGTGTGATGCAAGGTTACTATAAACAGGTGGATGAGACTGCTCAGACCATTGACAAGAA TGGATGGCTTCACACTGGTGACATAGGATTCATAGATGATGAAGAGAATGTTTTTATTGTTGATCGTATCAAGGAGTTGA TTAAATACAAAGGCTTCCAAGTTGCTCCTGCAGAGTTAGAGGCTATTTTGCTGTCTCATCCCTCAATTGAAGATGCTGCT GTTGTGTCATTACCAGATGAAGAGGCAGGGGAAATCCCAGCTGCAAGTGTTGTTTTGAGCCTTGGTGCCAAAGAGAGTGA AGAGGACATTATGAACTATGTTGCCTCCAATGCTGCTAGTTACAAGAAAGTGAGAGTGGTGCACTTTGTGGAATCCATAC CAAAATCACCATCTGGGAAAATAATGAGAAGGCTTGTCAAAGAGAAGATGGTGGAAAAGATGAAGACAAATTCCACAACT AAATCCATCACTCTCTAA
Protein sequence (LotjaGi6g1v0142900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPCQLPIYSYSNMGTSMENFANEEEHIFRSQYSPVPIPDNVTLPEFVLQNAELYADKVAFVDAVTGKGITYNEVVRDTKR FSKALRSLGIRKGNVVIVVLPNIPEYAIVALGIMASGGVFSGANPASHTSEIKKQAESADAKLIVTNSSSYDKVKGLEVP VVVLGDEVVEGAMNWNKLLEAADRAGDDMIREAVNQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFGVAPEMVGK VTILGLIPFFHIYGITGICCATLRNKGKVVVMGRFELKAFLNALITHEITFAPIVPPIILSLVKNPIVDEFDLSKLKLQA VMTAAAPLAPELLTNFEHKFPGVLVQEAYGLTEHSCITLTHAQKGLGSPHKNSVGFILPNLEVKFVDPETGKSLPRNTPG ELCVRSQCVMQGYYKQVDETAQTIDKNGWLHTGDIGFIDDEENVFIVDRIKELIKYKGFQVAPAELEAILLSHPSIEDAA VVSLPDEEAGEIPAASVVLSLGAKESEEDIMNYVASNAASYKKVRVVHFVESIPKSPSGKIMRRLVKEKMVEKMKTNSTT KSITL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 15 | 550 | 536 | 1.3E-290 | – | |
| PANTHER | 15 | 550 | 536 | 1.3E-290 | – | |
| Gene3D | 25 | 451 | 427 | 5.3E-126 | ||
| SUPERFAMILY | 27 | 552 | 526 | 7.06E-135 | – | |
| CDD | 37 | 544 | 508 | 0.0 | – | |
| Pfam | 49 | 456 | 408 | 3.6E-95 | ||
| ProSitePatterns | 202 | 213 | 12 | - | ||
| Gene3D | 452 | 555 | 104 | 1.2E-29 | – | |
| Pfam | 465 | 540 | 76 | 1.4E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi6g1v0142900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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