Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0145000 |
| Transcript ID | LotjaGi6g1v0145000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | T-complex protein 1 subunit beta; TAIR: AT5G20890.1 TCP-1/cpn60 chaperonin family protein; Swiss-Prot: sp|Q940P8|TCPB_ARATH T-complex protein 1 subunit beta; TrEMBL-Plants: tr|A0A151TNM7|A0A151TNM7_CAJCA T-complex protein 1 subunit beta; Found in the gene: LotjaGi6g1v0145000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:41611252..41617478) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTGTAAGTTACTTGCTACTTATTTAGTAATTTTTCCTTCCTTTGAGAATTCTTTCTTTCTTGTTTTGATAAGCCAT TGAGAATTTCTTGTGTGGTGAATGCTATAGATTGAGAGAATTTTTAAAGATGAAGCCAGTGAAGAAAAAGGAGAGCGCGC CAGAATGGTGAGCTTGTTATGATTTGTGTTTTTTACCCTGGCTCGTTATGATTAATATGCTTCTGATCTGTATTAGCTAA TATTTTTTATCGTTTTCCTTCTAATTTGAGTAAGTGGAATGTTTGTTAGCTTTAGCTTCATGTGTTGTGTGATTTGGTCT TGTGCAGGCATCTTTTGTTGGAGCCATGGCTATTGCTGATTTGGTGAAGACTACCTTAGGGCCAAAGGGAATGGTAAAAT CTCCTCTTCACTCATTAAATGGGCTGAGAAACGATTTATCTTCCACTCCTAAGTCCCAAGTCCTATGTCCTAAATAATTG ATATATCTTGGATGGGAAAACTGCAGGATAAAATTTTGCAGTCAACAGGTAGAGGACATGAAGTTACAGTCACTAATGAC GGTGCTACAATCTTAAAGTCCCTCCATATTGATAATGCAGCTGCTAAAGTCCTTGTGGGTATCCTTTTCATTTGTATTAA TGTGGTGAAAGCAGCTTAGAAATTATAGAATGGTACAGGATTTTGAGAGCTTTAATGAAATGCCTGTGCTTGTTTTTGAA GGCTTTGAATTTAACTTTAAAAAACTCAACATATAATAATTACAAAATGGGTAGTTTTCTCACATACTTACAAAAAATGT GAAGATGGGTATTTGGAACACAAATTTTGTGTGAAGCAAGATCAAAGAAGACAGTTTTCTTAATTATGAAGTCTGACAGT TACTACACTTTCTGCTTGCAGTCTTTTATGAAAATACAAAGTTTATTTATAAGAATGTTGACATCTAGAGCTTTCCAGTG ACTAGCCTTGGGTTTATATCTGGGCTTAGGTTGGTCTTTGATGAGTATAGGCCTCCAATCAAGAAGGTGTATGAGAGAAA GAACAAGGGGAAAGCCACAGCTTAATGTGTTTGTTATAGTTAGTTAGTATCCAGCTGGCAAGTTAGTTGTTTCTGTTAGT GGCCAGCTGGCAATTTCTGTTAGAGATGCATTCTGTTAGCATCTGGGAGATAGTATAAATAAAGGGAAGGGGGTAGTTAA CGAGTAGTTATTCAGTTAGTAGGTAATTGTGGAGAGACTGGTCTCTCGAACAACCAGAGGAAGAAGTAGGGTTCATTCCA CCATTTCTGTACCTTGAGCTCTGGTTCTCATTGAGAATCTGAGTCTCTATTTTCATTCAAATTCAATCTAGTTTCAGTTC AGAGTTCTACAGTGTTCATCAGTCTTCAAGTAACATTCAAATTTGACGTGAAAACAGCCTTTAGGCTGACTTCTTGAATT CCGACAGTACTTGGACATGTGATGTTTTTGTGCTAATTCATGAGACATTTTATTCAAATGCTTCAGCATAATACCTAGAT TTTCGCTAGACTTGTATTAGGTTGTTTTTTATTTATATAAAAATTTACCAATGTTAATTTCACGTGGCATATTTATCATT ATGATCGCTAGAATTTTGGTACTTTTGAAATGCCCATCTAGCTATTAATGGGAGCATTGGTGTGGATTTTTCATTGCAAT GTATGTAAATAAATGATTTAAATAATAAGATAGCCATCCTTAATGGAAGTTAGACATATCAAAAGTTCAAGATGATGAAG TTGGGGATGGAACAACCTCTGTTGTTGTCTTGGCTGGGGAACTTCTTAGGGAGGCAGAAAAGCTGGTTGCAGCTAAGATT CATCCCATGACCATAATATCAGGTTCATTTCTTTCCTTTTCCCCACAATGGTCCAACTGCCTTTATGATGCAAATTTTGT TGTGTTTTCGTGTAGACAGGTTTCTAGTGACAACTTTAGTGATGCATATTCTGTGTGTTAGGAAGTTTACCTCACTAGTA ATTACATTGGTACAGAAAGCAGCGCATTCCTTATCATGCATCCATTTTCAATGTTTTGTTATCCTTCCAAGGCTGCTCCA TCTCTACTTTGCTTTGGTTTTATTTTTAGTGTACTCTTCCTCCTTCCAGAAAGATGAATAAAAAAGGATACGAAATCATG GGAAGCATTAGAAACGTCAAATATGAAAGTTTTATAGTGATGCTTTGAGAACGATTTACAATTTTTATGGGTTTTGTAAT TTGCATGTGACCATGTGTCATGAATTTACTACCCAAAAGTTTAAGTTTTAGGTGAAAGAACACAGGAATGGTTTATATTA TATTTTTTAACATGCCTTCTTATAGCAAGGTTCTTTTAGACTTGAATTGTGGACATTGGCACATTGCACTGGCTGATAGA ACCCAGAAAATGAAAAGTGTTTTATTCACACGAACCCTAATTCCCAAATTAGGGAATAAGAGAAAGATACAGAATCGCCT AGAGAGAGAGAGAGATCCAACATTCACCTAAACCCCAACTCCAATTGATTCCTAAAAGATACCTCATACTTTCATGAACA ATCTTATTCATAGACTCACTCTATAACTAAGTCCCACCCCCCAACTAACTAACTATTTACCCCTAACTAGCCACTAACTG TGAGTACCTATCAATGACCCATCCACCTAAGGATTAAACACATGAATTTTTTGTATTATATTCTCAGCATGAATTGTGCT CGTATTACCATATGGCAAAAGGCTCGGATACCATTTGATGATCTAATTATCCTAAAAGGTTAAATTGTTGGGTAAAAACA CATGAATTGTTAATATTATATTCTCAGCATGAATATTGCCCTTCCCTTATTTTCTTAGCTGGTTTCAAAGATTTTGATTT CAACATTTCCTTTTGATTAATGAGTGTATTTGATATTAGCTGTTATGATTTTTAGGTTTCCGAATGGCAGCTGAGTGTGC TCTTAATGCATTGTTACAAATGGTTGTGGACAACAAAACAGATGCTGGTAATTGTTTTCTCTTTTGGATAGTGTGTTATT GGGTTTTTATCATTGGCTTTTGGTCTTTGAATTTGTTGTTATTATCATCAATTCATCATCATCATCATCATCATTTTTGT GTTTACAGCAGGGAGTGTTGAATGCATTCTTCCATCGTAATATCTAACACATGAATTAACTGGAATTGCAGAGAAATTCA GGTCAGACTTGATGAACATTGCAATGACAACTCTGAGCTCCAAGATCCTCTCACAGGACAAGGAGTACTTTGCGAAATTA GCTGTAGATGCTGTAGTGAGACTAAAGGTGAACTGTGACTACCCTAATGAATGCAAATTTCAATTCTGGTGGATTTATTG AATGGTGTCTGCACTTTGTTAAGTTTTCTCATCTGGACCAATTTTAATCTGCATGTTTTTTGCATACTTGGCTAAAAGCT TAGCTAAAAATTGTATTTTATTTAGAAGTTAGATTACAAAGCTTTTTTTGTGATCCAATTTTTTTATCACGCATTCTTGA TTTTGTTGCTTTTCAAATTTCTTCCAATCCTCAAACATCTTTTTCATTTTTGTAATTGCAATTTCATGATATAGTTTTTC ATGGTTTGTTAAAACATTCATTGAAATGTTGGTTTGTGTTTGGTTGTTTTTTCTGGTTTGCAGTAGTGGTTTTCCCTTTT TTTAAATGGTCTAAAAGGACAGAATGTTCTTTTAGTTGACTTGTTATATAATTGCTCAGTCTTTGTGCTTCTGTGCAAAC TAAGCATGCAGATATGTAATTACAGATCAAAGCATATTTTTTATCATAGTGCTCTATATTGTTATAAAGTTAACTATGCC TTTTCATGTTTTTATTTCCTTGAATCTTGCTTTTAATGATAATGTTTCCAATTGCAGGGAAGCACTAATTTGGAATCTAT CCAGATTATAAAGAAACCAGGAGGATCTCTAAAAGACTCATTTTTAGATGAAGGGTAATATTAGTAAAATATTACTATTT TGTAGTTCACAAGTATAGGATACTTGTACCTTTTGAATCCTCGTGTTCCGTTTTTGGTGAATTGCTTAGGCAGTCTTCAA GGAATTTTCATAATCTCAAATGATTATCAACTTGACCACTTTATTTTATATGAAGCATTTGCATTTGTAATATTTTGTTA TTTATGTTGAAATGTTGCTTATCCTTGCAATCTGAGTAAAAGATAATCATTCTACTTTGGATTCATGGTTTTGCTCAGAT TCATTCTTGACAAGAAAATTGGTGTTGGACAACCCAAACGCATAGAGAATGCAAAGATACTTGTGGCGAACACTGCCATG GACACAGACAAGGTGAAGATATATGGTGCTCGTGTTCGTGTGGATTCTATGGCTAAAGTTGCTGAGATTGAAGGAGCTGA GAAGGATAAAATGAAAGAAAAGGTGCAAAAGATAATAGGTCATGGTATCAATTGTTTTGTTAATAGACAGTTGATTTACA ATTTTCCAGAGGAGCTCTTTGCTGATGCGGGAATATTAGCTATTGAGCATGCTGATTTTGATGGTATTGAGCGTCTGGCT CTGGTAACTGGAGGTGAAATTGCATCGACCTTTGACAATCCTGAGTCTGTTAAGCTCGGGCATTGCGACCTCATTGAGGA GATTATGATTGGTGAGGATAAACTGATTCATTTCTCTGGTGTTGCAATGGGACAGGCATGTACCATAGTTCTGAGAGGTG CCAGGTACTATTTTATTCATTAGTTTTTTAAAATTGCTTTCCAAAATTGTTTTTACATATTCATGCATATTAATATTGAT AATATGGTACTTCAAATAATCATTTTTCTGTCATGAGGTTTCTTATTCTGGAAGTATGATTTTTTTGCAATGTTTTGTTG CTGTCAACTAGAATCAAAATGAATCCATGGTAGATCGTAGTACTTGGTATAAATTGCTTCAATTCCAATGACCTTGTATG CATTTGCCATAGTGATTATTGAAAGTTCACATCTCGAATCCTTTTTTATAATTATTTTTTAGTTTAGGACATAGGATGGA TTGCAACTTATTGAGTCCAATGATTTAACTATATACTGCTAGAATTTTGGATATTACCTTTCTTTTATGTGCATGTTCAT CTATTATCATGCCATGTTAGCTTATAACTTCATCTAGCAATATTTCTATTTTTTTTATTGTTTCGATCGAGCTGGACATG TATCGGAGTGTTTTCTGTACACATAGTAAATATCTGTTTTTAACAGGCTGGATAAAGTTTTGTTTTTTTTGTGTGCTTTG AGTATGACATATCTACTTTTGTGGCAGCCACCATGTTCTTGATGAGGCTGAGAGGTCATTGCATGACGCCTTGTGTGTCC TATCTCAGACTGTCAATGACAGCAGGGTGTTGCTTGGAGGTGGCTGGCCTGAGATGGTGATGTCAAAGGATGTGGATGAG TTGGCTAGGAAAACTCCTGGAAAGAAGTCTCTTGCTATGGAGGCATTTTCCCGTGCACTCTTGGCCATCCCAACAATCAT TGCTGATAATGCCGGTTTGGACAGTGCTGAGCTGATTTCTCAGCTTCGTGCAGAGCACCAGAAGGAGGGATGTACTACCG GAATTGATGTTATATCTGGTTCTGTAAGTACTGAAACTGAGAAATTGATGGATTTATTTGAATGAGCTAAATTTTTGAAA TGCTACATATTGATGTTACTATAAGATGCATTCTTGCAAAAATAGGTTGGAAGTTAATGACTCGATTATAATGTTCGGCC ATTCCCCTTTTTAATTGGTAGCAGATGTCCATCCAAGGGGTGGTTTTGTAGTTAGGTCGGATGTGTAGTATTTGACTTCT GTTTGGATTTCTGTTAGCAATGGTTGAAAACACTTTCAACAGGAATTCATGTCTGGATTGAACTAAAAAGTACTTTCCGG TGAATGTGATGGAAATCTAAACACAGTTGGCATTAAGGGAGCATGATACAATTTATGTTGTAGTGTTAGAAAAGTGTCAT TTATATGCTGGGAGCTCGACATGCTTCCCCTCTATTATGTTTGGCTAACGTGCTTTTGTACTGTTTTTTATTGCTGGAAG GTTGGAGACATGGCTGAACGGGGGATATGTGAAGCATTCAAAGTCAAGCAGGCTGTTCTGCTATCTGCAACAGAGGCAGC TGAGATGATTCTTAGAGTTGATGAAATCATAACTTGCGCTCCAAGGAGGAGAGAAGACAGAATGTAA
CDS sequence (LotjaGi6g1v0145000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTATTGAGAGAATTTTTAAAGATGAAGCCAGTGAAGAAAAAGGAGAGCGCGCCAGAATGGCATCTTTTGTTGGAGC CATGGCTATTGCTGATTTGGTGAAGACTACCTTAGGGCCAAAGGGAATGGATAAAATTTTGCAGTCAACAGGTAGAGGAC ATGAAGTTACAGTCACTAATGACGGTGCTACAATCTTAAAGTCCCTCCATATTGATAATGCAGCTGCTAAAGTCCTTTTA GACATATCAAAAGTTCAAGATGATGAAGTTGGGGATGGAACAACCTCTGTTGTTGTCTTGGCTGGGGAACTTCTTAGGGA GGCAGAAAAGCTGGTTGCAGCTAAGATTCATCCCATGACCATAATATCAGGTTTCCGAATGGCAGCTGAGTGTGCTCTTA ATGCATTGTTACAAATGGTTGTGGACAACAAAACAGATGCTGAGAAATTCAGGTCAGACTTGATGAACATTGCAATGACA ACTCTGAGCTCCAAGATCCTCTCACAGGACAAGGAGTACTTTGCGAAATTAGCTGTAGATGCTGTAGTGAGACTAAAGGG AAGCACTAATTTGGAATCTATCCAGATTATAAAGAAACCAGGAGGATCTCTAAAAGACTCATTTTTAGATGAAGGATTCA TTCTTGACAAGAAAATTGGTGTTGGACAACCCAAACGCATAGAGAATGCAAAGATACTTGTGGCGAACACTGCCATGGAC ACAGACAAGGTGAAGATATATGGTGCTCGTGTTCGTGTGGATTCTATGGCTAAAGTTGCTGAGATTGAAGGAGCTGAGAA GGATAAAATGAAAGAAAAGGTGCAAAAGATAATAGGTCATGGTATCAATTGTTTTGTTAATAGACAGTTGATTTACAATT TTCCAGAGGAGCTCTTTGCTGATGCGGGAATATTAGCTATTGAGCATGCTGATTTTGATGGTATTGAGCGTCTGGCTCTG GTAACTGGAGGTGAAATTGCATCGACCTTTGACAATCCTGAGTCTGTTAAGCTCGGGCATTGCGACCTCATTGAGGAGAT TATGATTGGTGAGGATAAACTGATTCATTTCTCTGGTGTTGCAATGGGACAGGCATGTACCATAGTTCTGAGAGGTGCCA GCCACCATGTTCTTGATGAGGCTGAGAGGTCATTGCATGACGCCTTGTGTGTCCTATCTCAGACTGTCAATGACAGCAGG GTGTTGCTTGGAGGTGGCTGGCCTGAGATGGTGATGTCAAAGGATGTGGATGAGTTGGCTAGGAAAACTCCTGGAAAGAA GTCTCTTGCTATGGAGGCATTTTCCCGTGCACTCTTGGCCATCCCAACAATCATTGCTGATAATGCCGGTTTGGACAGTG CTGAGCTGATTTCTCAGCTTCGTGCAGAGCACCAGAAGGAGGGATGTACTACCGGAATTGATGTTATATCTGGTTCTGTT GGAGACATGGCTGAACGGGGGATATGTGAAGCATTCAAAGTCAAGCAGGCTGTTCTGCTATCTGCAACAGAGGCAGCTGA GATGATTCTTAGAGTTGATGAAATCATAACTTGCGCTCCAAGGAGGAGAGAAGACAGAATGTAA
Protein sequence (LotjaGi6g1v0145000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIERIFKDEASEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGHEVTVTNDGATILKSLHIDNAAAKVLL DISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECALNALLQMVVDNKTDAEKFRSDLMNIAMT TLSSKILSQDKEYFAKLAVDAVVRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGVGQPKRIENAKILVANTAMD TDKVKIYGARVRVDSMAKVAEIEGAEKDKMKEKVQKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLAL VTGGEIASTFDNPESVKLGHCDLIEEIMIGEDKLIHFSGVAMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSR VLLGGGWPEMVMSKDVDELARKTPGKKSLAMEAFSRALLAIPTIIADNAGLDSAELISQLRAEHQKEGCTTGIDVISGSV GDMAERGICEAFKVKQAVLLSATEAAEMILRVDEIITCAPRRREDRM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 526 | 523 | 0.0 | – | |
| PANTHER | 4 | 526 | 523 | 0.0 | ||
| CDD | 6 | 522 | 517 | 0.0 | ||
| TIGRFAM | 6 | 523 | 518 | 8.7E-268 | ||
| SUPERFAMILY | 7 | 519 | 513 | 4.19E-80 | ||
| Gene3D | 29 | 516 | 488 | 4.2E-187 | ||
| Pfam | 30 | 517 | 488 | 3.0E-149 | ||
| PRINTS | 32 | 48 | 17 | 2.2E-31 | ||
| ProSitePatterns | 35 | 47 | 13 | - | ||
| PRINTS | 56 | 74 | 19 | 2.2E-31 | ||
| ProSitePatterns | 58 | 74 | 17 | - | ||
| ProSitePatterns | 86 | 94 | 9 | - | ||
| PRINTS | 86 | 105 | 20 | 2.2E-31 | ||
| Gene3D | 142 | 399 | 258 | 4.2E-187 | ||
| SUPERFAMILY | 152 | 399 | 248 | 1.86E-27 | ||
| SUPERFAMILY | 206 | 372 | 167 | 4.97E-44 | ||
| Gene3D | 211 | 363 | 153 | 4.2E-187 | ||
| PRINTS | 367 | 389 | 23 | 2.2E-31 | ||
| PRINTS | 401 | 413 | 13 | 2.2E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. | ||
| Cellular component | Chaperonin-containing T-complex | A multisubunit ring-shaped complex that mediates protein folding in the cytosol without a cofactor. | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Molecular function | Unfolded protein binding | Interacting selectively and non-covalently with an unfolded protein. |
Expression pattern of LotjaGi6g1v0145000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…