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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0145000 |
| Transcript ID | LotjaGi6g1v0145000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | T-complex protein 1 subunit beta; TAIR: AT5G20890.1 TCP-1/cpn60 chaperonin family protein; Swiss-Prot: sp|Q940P8|TCPB_ARATH T-complex protein 1 subunit beta; TrEMBL-Plants: tr|A0A151TNM7|A0A151TNM7_CAJCA T-complex protein 1 subunit beta; Found in the gene: LotjaGi6g1v0145000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:41611353..41617478) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTATAGATTGAGAGAATTTTTAAAGATGAAGCCAGTGAAGAAAAAGGAGAGCGCGCCAGAATGGTGAGCTTGTTATG ATTTGTGTTTTTTACCCTGGCTCGTTATGATTAATATGCTTCTGATCTGTATTAGCTAATATTTTTTATCGTTTTCCTTC TAATTTGAGTAAGTGGAATGTTTGTTAGCTTTAGCTTCATGTGTTGTGTGATTTGGTCTTGTGCAGGCATCTTTTGTTGG AGCCATGGCTATTGCTGATTTGGTGAAGACTACCTTAGGGCCAAAGGGAATGGTAAAATCTCCTCTTCACTCATTAAATG GGCTGAGAAACGATTTATCTTCCACTCCTAAGTCCCAAGTCCTATGTCCTAAATAATTGATATATCTTGGATGGGAAAAC TGCAGGATAAAATTTTGCAGTCAACAGGTAGAGGACATGAAGTTACAGTCACTAATGACGGTGCTACAATCTTAAAGTCC CTCCATATTGATAATGCAGCTGCTAAAGTCCTTGTGGGTATCCTTTTCATTTGTATTAATGTGGTGAAAGCAGCTTAGAA ATTATAGAATGGTACAGGATTTTGAGAGCTTTAATGAAATGCCTGTGCTTGTTTTTGAAGGCTTTGAATTTAACTTTAAA AAACTCAACATATAATAATTACAAAATGGGTAGTTTTCTCACATACTTACAAAAAATGTGAAGATGGGTATTTGGAACAC AAATTTTGTGTGAAGCAAGATCAAAGAAGACAGTTTTCTTAATTATGAAGTCTGACAGTTACTACACTTTCTGCTTGCAG TCTTTTATGAAAATACAAAGTTTATTTATAAGAATGTTGACATCTAGAGCTTTCCAGTGACTAGCCTTGGGTTTATATCT GGGCTTAGGTTGGTCTTTGATGAGTATAGGCCTCCAATCAAGAAGGTGTATGAGAGAAAGAACAAGGGGAAAGCCACAGC TTAATGTGTTTGTTATAGTTAGTTAGTATCCAGCTGGCAAGTTAGTTGTTTCTGTTAGTGGCCAGCTGGCAATTTCTGTT AGAGATGCATTCTGTTAGCATCTGGGAGATAGTATAAATAAAGGGAAGGGGGTAGTTAACGAGTAGTTATTCAGTTAGTA GGTAATTGTGGAGAGACTGGTCTCTCGAACAACCAGAGGAAGAAGTAGGGTTCATTCCACCATTTCTGTACCTTGAGCTC TGGTTCTCATTGAGAATCTGAGTCTCTATTTTCATTCAAATTCAATCTAGTTTCAGTTCAGAGTTCTACAGTGTTCATCA GTCTTCAAGTAACATTCAAATTTGACGTGAAAACAGCCTTTAGGCTGACTTCTTGAATTCCGACAGTACTTGGACATGTG ATGTTTTTGTGCTAATTCATGAGACATTTTATTCAAATGCTTCAGCATAATACCTAGATTTTCGCTAGACTTGTATTAGG TTGTTTTTTATTTATATAAAAATTTACCAATGTTAATTTCACGTGGCATATTTATCATTATGATCGCTAGAATTTTGGTA CTTTTGAAATGCCCATCTAGCTATTAATGGGAGCATTGGTGTGGATTTTTCATTGCAATGTATGTAAATAAATGATTTAA ATAATAAGATAGCCATCCTTAATGGAAGTTAGACATATCAAAAGTTCAAGATGATGAAGTTGGGGATGGAACAACCTCTG TTGTTGTCTTGGCTGGGGAACTTCTTAGGGAGGCAGAAAAGCTGGTTGCAGCTAAGATTCATCCCATGACCATAATATCA GGTTCATTTCTTTCCTTTTCCCCACAATGGTCCAACTGCCTTTATGATGCAAATTTTGTTGTGTTTTCGTGTAGACAGGT TTCTAGTGACAACTTTAGTGATGCATATTCTGTGTGTTAGGAAGTTTACCTCACTAGTAATTACATTGGTACAGAAAGCA GCGCATTCCTTATCATGCATCCATTTTCAATGTTTTGTTATCCTTCCAAGGCTGCTCCATCTCTACTTTGCTTTGGTTTT ATTTTTAGTGTACTCTTCCTCCTTCCAGAAAGATGAATAAAAAAGGATACGAAATCATGGGAAGCATTAGAAACGTCAAA TATGAAAGTTTTATAGTGATGCTTTGAGAACGATTTACAATTTTTATGGGTTTTGTAATTTGCATGTGACCATGTGTCAT GAATTTACTACCCAAAAGTTTAAGTTTTAGGTGAAAGAACACAGGAATGGTTTATATTATATTTTTTAACATGCCTTCTT ATAGCAAGGTTCTTTTAGACTTGAATTGTGGACATTGGCACATTGCACTGGCTGATAGAACCCAGAAAATGAAAAGTGTT TTATTCACACGAACCCTAATTCCCAAATTAGGGAATAAGAGAAAGATACAGAATCGCCTAGAGAGAGAGAGAGATCCAAC ATTCACCTAAACCCCAACTCCAATTGATTCCTAAAAGATACCTCATACTTTCATGAACAATCTTATTCATAGACTCACTC TATAACTAAGTCCCACCCCCCAACTAACTAACTATTTACCCCTAACTAGCCACTAACTGTGAGTACCTATCAATGACCCA TCCACCTAAGGATTAAACACATGAATTTTTTGTATTATATTCTCAGCATGAATTGTGCTCGTATTACCATATGGCAAAAG GCTCGGATACCATTTGATGATCTAATTATCCTAAAAGGTTAAATTGTTGGGTAAAAACACATGAATTGTTAATATTATAT TCTCAGCATGAATATTGCCCTTCCCTTATTTTCTTAGCTGGTTTCAAAGATTTTGATTTCAACATTTCCTTTTGATTAAT GAGTGTATTTGATATTAGCTGTTATGATTTTTAGGTTTCCGAATGGCAGCTGAGTGTGCTCTTAATGCATTGTTACAAAT GGTTGTGGACAACAAAACAGATGCTGGTAATTGTTTTCTCTTTTGGATAGTGTGTTATTGGGTTTTTATCATTGGCTTTT GGTCTTTGAATTTGTTGTTATTATCATCAATTCATCATCATCATCATCATCATTTTTGTGTTTACAGCAGGGAGTGTTGA ATGCATTCTTCCATCGTAATATCTAACACATGAATTAACTGGAATTGCAGAGAAATTCAGGTCAGACTTGATGAACATTG CAATGACAACTCTGAGCTCCAAGATCCTCTCACAGGACAAGGAGTACTTTGCGAAATTAGCTGTAGATGCTGTAGTGAGA CTAAAGGTGAACTGTGACTACCCTAATGAATGCAAATTTCAATTCTGGTGGATTTATTGAATGGTGTCTGCACTTTGTTA AGTTTTCTCATCTGGACCAATTTTAATCTGCATGTTTTTTGCATACTTGGCTAAAAGCTTAGCTAAAAATTGTATTTTAT TTAGAAGTTAGATTACAAAGCTTTTTTTGTGATCCAATTTTTTTATCACGCATTCTTGATTTTGTTGCTTTTCAAATTTC TTCCAATCCTCAAACATCTTTTTCATTTTTGTAATTGCAATTTCATGATATAGTTTTTCATGGTTTGTTAAAACATTCAT TGAAATGTTGGTTTGTGTTTGGTTGTTTTTTCTGGTTTGCAGTAGTGGTTTTCCCTTTTTTTAAATGGTCTAAAAGGACA GAATGTTCTTTTAGTTGACTTGTTATATAATTGCTCAGTCTTTGTGCTTCTGTGCAAACTAAGCATGCAGATATGTAATT ACAGATCAAAGCATATTTTTTATCATAGTGCTCTATATTGTTATAAAGTTAACTATGCCTTTTCATGTTTTTATTTCCTT GAATCTTGCTTTTAATGATAATGTTTCCAATTGCAGGGAAGCACTAATTTGGAATCTATCCAGATTATAAAGAAACCAGG AGGATCTCTAAAAGACTCATTTTTAGATGAAGGGTAATATTAGTAAAATATTACTATTTTGTAGTTCACAAGTATAGGAT ACTTGTACCTTTTGAATCCTCGTGTTCCGTTTTTGGTGAATTGCTTAGGCAGTCTTCAAGGAATTTTCATAATCTCAAAT GATTATCAACTTGACCACTTTATTTTATATGAAGCATTTGCATTTGTAATATTTTGTTATTTATGTTGAAATGTTGCTTA TCCTTGCAATCTGAGTAAAAGATAATCATTCTACTTTGGATTCATGGTTTTGCTCAGATTCATTCTTGACAAGAAAATTG GTGTTGGACAACCCAAACGCATAGAGAATGCAAAGATACTTGTGGCGAACACTGCCATGGACACAGACAAGGTGAAGATA TATGGTGCTCGTGTTCGTGTGGATTCTATGGCTAAAGTTGCTGAGATTGAAGGAGCTGAGAAGGATAAAATGAAAGAAAA GGTGCAAAAGATAATAGGTCATGGTATCAATTGTTTTGTTAATAGACAGTTGATTTACAATTTTCCAGAGGAGCTCTTTG CTGATGCGGGAATATTAGCTATTGAGCATGCTGATTTTGATGGTATTGAGCGTCTGGCTCTGGTAACTGGAGGTGAAATT GCATCGACCTTTGACAATCCTGAGTCTGTTAAGCTCGGGCATTGCGACCTCATTGAGGAGATTATGATTGGTGAGGATAA ACTGATTCATTTCTCTGGTGTTGCAATGGGACAGGCATGTACCATAGTTCTGAGAGGTGCCAGGTACTATTTTATTCATT AGTTTTTTAAAATTGCTTTCCAAAATTGTTTTTACATATTCATGCATATTAATATTGATAATATGGTACTTCAAATAATC ATTTTTCTGTCATGAGGTTTCTTATTCTGGAAGTATGATTTTTTTGCAATGTTTTGTTGCTGTCAACTAGAATCAAAATG AATCCATGGTAGATCGTAGTACTTGGTATAAATTGCTTCAATTCCAATGACCTTGTATGCATTTGCCATAGTGATTATTG AAAGTTCACATCTCGAATCCTTTTTTATAATTATTTTTTAGTTTAGGACATAGGATGGATTGCAACTTATTGAGTCCAAT GATTTAACTATATACTGCTAGAATTTTGGATATTACCTTTCTTTTATGTGCATGTTCATCTATTATCATGCCATGTTAGC TTATAACTTCATCTAGCAATATTTCTATTTTTTTTATTGTTTCGATCGAGCTGGACATGTATCGGAGTGTTTTCTGTACA CATAGTAAATATCTGTTTTTAACAGGCTGGATAAAGTTTTGTTTTTTTTGTGTGCTTTGAGTATGACATATCTACTTTTG TGGCAGCCACCATGTTCTTGATGAGGCTGAGAGGTCATTGCATGACGCCTTGTGTGTCCTATCTCAGACTGTCAATGACA GCAGGGTGTTGCTTGGAGGTGGCTGGCCTGAGATGGTGATGTCAAAGGATGTGGATGAGTTGGCTAGGAAAACTCCTGGA AAGAAGTCTCTTGCTATGGAGGCATTTTCCCGTGCACTCTTGGCCATCCCAACAATCATTGCTGATAATGCCGGTTTGGA CAGTGCTGAGCTGATTTCTCAGCTTCGTGCAGAGCACCAGAAGGAGGGATGTACTACCGGAATTGATGTTATATCTGGTT CTGTAAGTACTGAAACTGAGAAATTGATGGATTTATTTGAATGAGCTAAATTTTTGAAATGCTACATATTGATGTTACTA TAAGATGCATTCTTGCAAAAATAGGTTGGAAGTTAATGACTCGATTATAATGTTCGGCCATTCCCCTTTTTAATTGGTAG CAGATGTCCATCCAAGGGGTGGTTTTGTAGTTAGGTCGGATGTGTAGTATTTGACTTCTGTTTGGATTTCTGTTAGCAAT GGTTGAAAACACTTTCAACAGGAATTCATGTCTGGATTGAACTAAAAAGTACTTTCCGGTGAATGTGATGGAAATCTAAA CACAGTTGGCATTAAGGGAGCATGATACAATTTATGTTGTAGTGTTAGAAAAGTGTCATTTATATGCTGGGAGCTCGACA TGCTTCCCCTCTATTATGTTTGGCTAACGTGCTTTTGTACTGTTTTTTATTGCTGGAAGGTTGGAGACATGGCTGAACGG GGGATATGTGAAGCATTCAAAGTCAAGCAGGCTGTTCTGCTATCTGCAACAGAGGCAGCTGAGATGATTCTTAGAGTTGA TGAAATCATAACTTGCGCTCCAAGGAGGAGAGAAGACAGAATGTAA
CDS sequence (LotjaGi6g1v0145000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCTTTTGTTGGAGCCATGGCTATTGCTGATTTGGTGAAGACTACCTTAGGGCCAAAGGGAATGGATAAAATTTT GCAGTCAACAGGTAGAGGACATGAAGTTACAGTCACTAATGACGGTGCTACAATCTTAAAGTCCCTCCATATTGATAATG CAGCTGCTAAAGTCCTTTTAGACATATCAAAAGTTCAAGATGATGAAGTTGGGGATGGAACAACCTCTGTTGTTGTCTTG GCTGGGGAACTTCTTAGGGAGGCAGAAAAGCTGGTTGCAGCTAAGATTCATCCCATGACCATAATATCAGGTTTCCGAAT GGCAGCTGAGTGTGCTCTTAATGCATTGTTACAAATGGTTGTGGACAACAAAACAGATGCTGAGAAATTCAGGTCAGACT TGATGAACATTGCAATGACAACTCTGAGCTCCAAGATCCTCTCACAGGACAAGGAGTACTTTGCGAAATTAGCTGTAGAT GCTGTAGTGAGACTAAAGGGAAGCACTAATTTGGAATCTATCCAGATTATAAAGAAACCAGGAGGATCTCTAAAAGACTC ATTTTTAGATGAAGGATTCATTCTTGACAAGAAAATTGGTGTTGGACAACCCAAACGCATAGAGAATGCAAAGATACTTG TGGCGAACACTGCCATGGACACAGACAAGGTGAAGATATATGGTGCTCGTGTTCGTGTGGATTCTATGGCTAAAGTTGCT GAGATTGAAGGAGCTGAGAAGGATAAAATGAAAGAAAAGGTGCAAAAGATAATAGGTCATGGTATCAATTGTTTTGTTAA TAGACAGTTGATTTACAATTTTCCAGAGGAGCTCTTTGCTGATGCGGGAATATTAGCTATTGAGCATGCTGATTTTGATG GTATTGAGCGTCTGGCTCTGGTAACTGGAGGTGAAATTGCATCGACCTTTGACAATCCTGAGTCTGTTAAGCTCGGGCAT TGCGACCTCATTGAGGAGATTATGATTGGTGAGGATAAACTGATTCATTTCTCTGGTGTTGCAATGGGACAGGCATGTAC CATAGTTCTGAGAGGTGCCAGCCACCATGTTCTTGATGAGGCTGAGAGGTCATTGCATGACGCCTTGTGTGTCCTATCTC AGACTGTCAATGACAGCAGGGTGTTGCTTGGAGGTGGCTGGCCTGAGATGGTGATGTCAAAGGATGTGGATGAGTTGGCT AGGAAAACTCCTGGAAAGAAGTCTCTTGCTATGGAGGCATTTTCCCGTGCACTCTTGGCCATCCCAACAATCATTGCTGA TAATGCCGGTTTGGACAGTGCTGAGCTGATTTCTCAGCTTCGTGCAGAGCACCAGAAGGAGGGATGTACTACCGGAATTG ATGTTATATCTGGTTCTGTTGGAGACATGGCTGAACGGGGGATATGTGAAGCATTCAAAGTCAAGCAGGCTGTTCTGCTA TCTGCAACAGAGGCAGCTGAGATGATTCTTAGAGTTGATGAAATCATAACTTGCGCTCCAAGGAGGAGAGAAGACAGAAT GTAA
Protein sequence (LotjaGi6g1v0145000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASFVGAMAIADLVKTTLGPKGMDKILQSTGRGHEVTVTNDGATILKSLHIDNAAAKVLLDISKVQDDEVGDGTTSVVVL AGELLREAEKLVAAKIHPMTIISGFRMAAECALNALLQMVVDNKTDAEKFRSDLMNIAMTTLSSKILSQDKEYFAKLAVD AVVRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGVGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMAKVA EIEGAEKDKMKEKVQKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGH CDLIEEIMIGEDKLIHFSGVAMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLLGGGWPEMVMSKDVDELA RKTPGKKSLAMEAFSRALLAIPTIIADNAGLDSAELISQLRAEHQKEGCTTGIDVISGSVGDMAERGICEAFKVKQAVLL SATEAAEMILRVDEIITCAPRRREDRM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 506 | 506 | 0.0 | – | |
| CDD | 1 | 502 | 502 | 0.0 | ||
| PANTHER | 1 | 506 | 506 | 0.0 | ||
| TIGRFAM | 2 | 503 | 502 | 7.8E-261 | ||
| SUPERFAMILY | 3 | 499 | 497 | 2.88E-78 | ||
| Gene3D | 9 | 496 | 488 | 3.6E-187 | ||
| Pfam | 10 | 497 | 488 | 2.6E-149 | ||
| PRINTS | 12 | 28 | 17 | 1.9E-31 | ||
| ProSitePatterns | 15 | 27 | 13 | - | ||
| PRINTS | 36 | 54 | 19 | 1.9E-31 | ||
| ProSitePatterns | 38 | 54 | 17 | - | ||
| ProSitePatterns | 66 | 74 | 9 | - | ||
| PRINTS | 66 | 85 | 20 | 1.9E-31 | ||
| Gene3D | 122 | 379 | 258 | 3.6E-187 | ||
| SUPERFAMILY | 132 | 379 | 248 | 1.68E-27 | ||
| SUPERFAMILY | 186 | 352 | 167 | 4.71E-44 | ||
| Gene3D | 191 | 343 | 153 | 3.6E-187 | ||
| PRINTS | 347 | 369 | 23 | 1.9E-31 | ||
| PRINTS | 381 | 393 | 13 | 1.9E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. | ||
| Cellular component | Chaperonin-containing T-complex | A multisubunit ring-shaped complex that mediates protein folding in the cytosol without a cofactor. | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Molecular function | Unfolded protein binding | Interacting selectively and non-covalently with an unfolded protein. |
Expression pattern of LotjaGi6g1v0145000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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