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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0157800 |
| Transcript ID | LotjaGi6g1v0157800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070, chloroplastic; TrEMBL-Plants: tr|A0A072UXQ8|A0A072UXQ8_MEDTR Organelle transcript processing protein, putative; Found in the gene: LotjaGi6g1v0157800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:43879638..43883478) extracted from Lotus japonicus Gifu genome v1.2.
CATATATCTCAACCCTCTAAACACAAAAATATCGATAACTCTAGATATTGTGATTTTCATGAAAATGAAAATGATGGCCA CAACACACATGAATGCATTCAAATGAAAGACTCAATCGAGCATGTTGGAAATCCAAAGTTGAAAAAAACATGTGGTTAAT GTGAAGCTCCACAAAAATGAGAGAGTGAAAAAGTGTGGTACATCTCTCTTGTCTTCTTGTACCAAACAGGGTTTGAATAA CCATAAGCCAACATGCTGAGCAACGAGTATTTGTGCATGCACCTATGCATGTAACCATTTCTCTTGAGTGATGCTGAGAC TAACCACCTTGAGACCAACCATAAACCTTAGCATCTTAGAGACACAGCTACAACGATGCCAATGCCTAAGACAATTCAAT CAGATTCTGTCTCAGATGATCCTCACAGGCTTCATCACAGACACCTATGCTGCAAGCAGGATCATCAACTTCTCCACTCA CTCCACTTCCATTCCCTTCCATCATTCCCTCCGAATATTCAACCACCTCCACAACCCCAACACCTTCACTTGGAACACCA TCATGCGTGCCCACTTGGAACTTCACAACTCACCCCATCAAGCTCTCATCTTGTACAAGCTCTTTCTTTTGGAGAATGCA GCTCCTGATAGCTACACCTACCCAATTCTCCTCGGATCCTGCACTGCCCGGGTGGCGGTATTCGAAGGAAAGGAAATTCA GGACCATGTTGTCAAGCTGGGTTTTGGTTCTGATGTTTATGTCAGGAACACGCTGATCAAGTTGTATGCTGTTTGCGGGG ACATGGTGGGTGCCCGCAAAGTGTTTGAGGAAATTCCTGTGTTGGATTTGGTTTCTTGGAATACCCTATTGTCTGGGTAT GTTCAGACGGGTGATGTGGAGGAAGCAGAACGCGTGTACGGCCGGATGCCGGAGAGGAACACAATTGCTTCCAACTCGAT GGTGGCACTCTTTGGAAGGAAGGGTCTTGTTGCGAAGGCGCGCGAGCTTTCGGATGGGATTCGGGGAAAGGATATGGTTT CGTGGAGTGCGATGATTTCTTGTTATGAACAGAATGGGATGTATGAGGATGCGCTGGTTTTGTTTGTGGATATGAATGCT AATGGGGTGATGGTGGATGAGGTGGTTGTGGTTAGTGCTATCTCTGCTTGTTCGCGCCTGTCAATTGTCCCGACAGGGAA GTCAGTGCATGGCTTGGCTGCAAAAGTTGGAATTGAAGCTTATGTTAGCCTTCAGAATGCCTTGATATTTTTGTACTCAA GTTGTGGGGAGATATTGGATGCTCAGAAAATTTTCAATGGGGGTGTCCTCTTGGATCAGATATCTTGGAACTCAATGATA TCTGGGTACTTGAGGTGTGGTTCAGTTGAGGATGCTGAGACATTATTTTCTTCCATGCCTGAGAAGGATGTTGTGTCTTG GAGTGCTATGATATCAGGTTATACTCAAAATGAACGTTACTCAGAGGCTCTGGATTTATTCCAGGAGATGCAGCTTCATG GAATGAGGCCAGATGAGACTGCTTTGGTGAGTGTCATCTCAGCATGCACCCATCTGGCTGCTTTGGACTTGGGCAAATGG GTTCATGCTTATATAAGAAAAAATAAGTTACGGGTTAATGTTGAACTAGGCACGACACTTATGGATATGTATTTGAAATC TGGCTGTGTGGACGATGCACTAGAGGTTTTTTATGCTATGGAGGAAAAGCGGGATTCTACCTGGAATGCTCTCATTGGTG GGTTGGCAATGAATGGTTTGGTAGAAAAGTCCCTTAACATGTTTGCAGAAATGAAGAATACTGGAACACTTCCTAATGAG ATAACATTTGTGGCAGTTCTTGGAGCCTGTCGGCACATGGGCCTAGTGGACGAGGGACGCCGCTACTTTAGTTCTATGAT CCAAGAACACAAAATAGAGCCAAACGTTAAGCACTATGGATGCATGGTTGATCTTTTAGGACGTGCAGGTTTGCTTAAAG AAGCAGAAGAACTGATTGAGACTATGCCAATGGCACCTGATGTTTCTACTTGGGGTGCTTTGCTTGGGGCTTGTAGAAAA CACCAGAACAATGAAATGGGGGAGAGGGTGGGAAGAAAGCTCATTCAGCTTCAGCCTGACCATGATGGTTTCCATGTATT ATTGTCAAATATATATGCTTCAAAAGGAAATTGGGGCGATGTTCTTGAAATTAGAGGAATTATGTCACAACATGGGGTTG TGAAGACACCTGGTTGTAGCGTGATTGAAGCAAATGGAACAGTTCATGAGTTCCTAGCAGGAGATATGACACACCCTCAG ATAAATGACATCGAGCACATGCTAGATGTAGTGGCTGCAAAACTTAAGATTGAGGGCTATTCACCAATTACAAGTGAGGT TTCACTTGATATAGATGAAGAAGAGAAAGAAACTGTCCTTTCAAGGCACAGTGAGAAACTTGCAGTTGCCTTTGGACTTA TCACTATTGTTCCACCAATTCCAATCAGAATAATGAAGAATTTGCGCATATGTAATGATTGCCACACAGTAATGAAGTTA ATCTCCAAAGCTTTTAATCGTGAAATTGTGGTACGGGATCGTCATCGCTTTCATCACTTTAAGCATGGATCTTGTTCCTG CATGGATTTTTGGTAGCAAAACTGCAAGTGCAATTAAAGTGAATGTGTCTCCTATGCTCTAAGAAGGTGCACTCAAAATT TTTATAGTGCTCTGGACTCCAACATCAAAGCATGCATAGAAGATTATTTCAAGATTTGGTATGTTTCCTTTTGCATAATC AAATTTTGTTCATTCTTATGCTGCAAGGGAGACTAAAAGCATTGTTGGTAAAGTTTGGAGAATTAGAGCATACTATACTT CTTAGTATTCGTGTTATGCCTAACTCTACCCCCAAAAGCTAGCTCGTAAGGTGGGGATTGCCAATCCCTTTATAAGTTCT ATGTTGGCTTTACTTCTAATCCATGTGGGGATCTCAACAATACTTCAGCAGATATCAATATAATTTTCCTGATGTTGATT AACAATGTTAGCTCCAAGAGTCTGAAATGAATCAATATGTATTTAATGTATTATTAGGTTACTTGGGGTTGTGGATACAT GGTGTTGATGGAGCATGCATTGAGGGGTCGGCCTATTTTCTTGGTGAAGTTTGCAAAAATCCAATTAGCATTGGCCTCTG TTTTGGCCTTCATTAGTATCTCTGAGTCAGTAACCATCATTGTGAAGCTGGCTTGAAATACTATTGATGAGTGATGTAAC TGCTTTTTCCCATGCACATTACAGTGGCTTTGCTCGGCTTGTTGAGTTAAACAGACCGCTCAATTGCCATTTCTTTCGTC ACCTGATGTGTGCAAATGAGTTCCAAAAGTTCCTGCCCCGATGCGTTTAATCCACGCATTCCTTCCAAAGGCACCAATTG AGATTAGCCAGGGCCAATGTGCTTGACATATTTAACAAGGATTTTCTTTGCCTAACAGGCTAACACTGCTGTCATTGTAA GTCTTCAGTGTGATGCTGCTAAACCTTATATTTCTCATGTTTGTGCGGCCCTTTTTAGAGAGCTCCAGAAAAGGCAGATA GCATAGCTAGTCAAGTCTCTTTCATCATTTTTGTCACTCTTTCTGATAAAACATGACTCTTCAATTGTTCTTGATACTTG ATACTATGAACTGTGTTTAGCCTGATGTATTTGTTGTTGGAGTGATCAATGTAGTGCTTTGATTCTTTAACTTGCCCAAG CATAATTGAAGCCCAGTCCCTGATATTTTATATCACTTTGATATTTCAGTGCTTACCCAAAAAAAAACTTTGATATTTCA G
CDS sequence (LotjaGi6g1v0157800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGAGACTAACCACCTTGAGACCAACCATAAACCTTAGCATCTTAGAGACACAGCTACAACGATGCCAATGCCTAAG ACAATTCAATCAGATTCTGTCTCAGATGATCCTCACAGGCTTCATCACAGACACCTATGCTGCAAGCAGGATCATCAACT TCTCCACTCACTCCACTTCCATTCCCTTCCATCATTCCCTCCGAATATTCAACCACCTCCACAACCCCAACACCTTCACT TGGAACACCATCATGCGTGCCCACTTGGAACTTCACAACTCACCCCATCAAGCTCTCATCTTGTACAAGCTCTTTCTTTT GGAGAATGCAGCTCCTGATAGCTACACCTACCCAATTCTCCTCGGATCCTGCACTGCCCGGGTGGCGGTATTCGAAGGAA AGGAAATTCAGGACCATGTTGTCAAGCTGGGTTTTGGTTCTGATGTTTATGTCAGGAACACGCTGATCAAGTTGTATGCT GTTTGCGGGGACATGGTGGGTGCCCGCAAAGTGTTTGAGGAAATTCCTGTGTTGGATTTGGTTTCTTGGAATACCCTATT GTCTGGGTATGTTCAGACGGGTGATGTGGAGGAAGCAGAACGCGTGTACGGCCGGATGCCGGAGAGGAACACAATTGCTT CCAACTCGATGGTGGCACTCTTTGGAAGGAAGGGTCTTGTTGCGAAGGCGCGCGAGCTTTCGGATGGGATTCGGGGAAAG GATATGGTTTCGTGGAGTGCGATGATTTCTTGTTATGAACAGAATGGGATGTATGAGGATGCGCTGGTTTTGTTTGTGGA TATGAATGCTAATGGGGTGATGGTGGATGAGGTGGTTGTGGTTAGTGCTATCTCTGCTTGTTCGCGCCTGTCAATTGTCC CGACAGGGAAGTCAGTGCATGGCTTGGCTGCAAAAGTTGGAATTGAAGCTTATGTTAGCCTTCAGAATGCCTTGATATTT TTGTACTCAAGTTGTGGGGAGATATTGGATGCTCAGAAAATTTTCAATGGGGGTGTCCTCTTGGATCAGATATCTTGGAA CTCAATGATATCTGGGTACTTGAGGTGTGGTTCAGTTGAGGATGCTGAGACATTATTTTCTTCCATGCCTGAGAAGGATG TTGTGTCTTGGAGTGCTATGATATCAGGTTATACTCAAAATGAACGTTACTCAGAGGCTCTGGATTTATTCCAGGAGATG CAGCTTCATGGAATGAGGCCAGATGAGACTGCTTTGGTGAGTGTCATCTCAGCATGCACCCATCTGGCTGCTTTGGACTT GGGCAAATGGGTTCATGCTTATATAAGAAAAAATAAGTTACGGGTTAATGTTGAACTAGGCACGACACTTATGGATATGT ATTTGAAATCTGGCTGTGTGGACGATGCACTAGAGGTTTTTTATGCTATGGAGGAAAAGCGGGATTCTACCTGGAATGCT CTCATTGGTGGGTTGGCAATGAATGGTTTGGTAGAAAAGTCCCTTAACATGTTTGCAGAAATGAAGAATACTGGAACACT TCCTAATGAGATAACATTTGTGGCAGTTCTTGGAGCCTGTCGGCACATGGGCCTAGTGGACGAGGGACGCCGCTACTTTA GTTCTATGATCCAAGAACACAAAATAGAGCCAAACGTTAAGCACTATGGATGCATGGTTGATCTTTTAGGACGTGCAGGT TTGCTTAAAGAAGCAGAAGAACTGATTGAGACTATGCCAATGGCACCTGATGTTTCTACTTGGGGTGCTTTGCTTGGGGC TTGTAGAAAACACCAGAACAATGAAATGGGGGAGAGGGTGGGAAGAAAGCTCATTCAGCTTCAGCCTGACCATGATGGTT TCCATGTATTATTGTCAAATATATATGCTTCAAAAGGAAATTGGGGCGATGTTCTTGAAATTAGAGGAATTATGTCACAA CATGGGGTTGTGAAGACACCTGGTTGTAGCGTGATTGAAGCAAATGGAACAGTTCATGAGTTCCTAGCAGGAGATATGAC ACACCCTCAGATAAATGACATCGAGCACATGCTAGATGTAGTGGCTGCAAAACTTAAGATTGAGGGCTATTCACCAATTA CAAGTGAGGTTTCACTTGATATAGATGAAGAAGAGAAAGAAACTGTCCTTTCAAGGCACAGTGAGAAACTTGCAGTTGCC TTTGGACTTATCACTATTGTTCCACCAATTCCAATCAGAATAATGAAGAATTTGCGCATATGTAATGATTGCCACACAGT AATGAAGTTAATCTCCAAAGCTTTTAATCGTGAAATTGTGGTACGGGATCGTCATCGCTTTCATCACTTTAAGCATGGAT CTTGTTCCTGCATGGATTTTTGGTAG
Protein sequence (LotjaGi6g1v0157800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRLTTLRPTINLSILETQLQRCQCLRQFNQILSQMILTGFITDTYAASRIINFSTHSTSIPFHHSLRIFNHLHNPNTFT WNTIMRAHLELHNSPHQALILYKLFLLENAAPDSYTYPILLGSCTARVAVFEGKEIQDHVVKLGFGSDVYVRNTLIKLYA VCGDMVGARKVFEEIPVLDLVSWNTLLSGYVQTGDVEEAERVYGRMPERNTIASNSMVALFGRKGLVAKARELSDGIRGK DMVSWSAMISCYEQNGMYEDALVLFVDMNANGVMVDEVVVVSAISACSRLSIVPTGKSVHGLAAKVGIEAYVSLQNALIF LYSSCGEILDAQKIFNGGVLLDQISWNSMISGYLRCGSVEDAETLFSSMPEKDVVSWSAMISGYTQNERYSEALDLFQEM QLHGMRPDETALVSVISACTHLAALDLGKWVHAYIRKNKLRVNVELGTTLMDMYLKSGCVDDALEVFYAMEEKRDSTWNA LIGGLAMNGLVEKSLNMFAEMKNTGTLPNEITFVAVLGACRHMGLVDEGRRYFSSMIQEHKIEPNVKHYGCMVDLLGRAG LLKEAEELIETMPMAPDVSTWGALLGACRKHQNNEMGERVGRKLIQLQPDHDGFHVLLSNIYASKGNWGDVLEIRGIMSQ HGVVKTPGCSVIEANGTVHEFLAGDMTHPQINDIEHMLDVVAAKLKIEGYSPITSEVSLDIDEEEKETVLSRHSEKLAVA FGLITIVPPIPIRIMKNLRICNDCHTVMKLISKAFNREIVVRDRHRFHHFKHGSCSCMDFW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 131 | 127 | 1.8E-6 | ||
| PANTHER | 57 | 231 | 175 | 3.5E-123 | – | |
| ProSiteProfiles | 77 | 112 | 36 | 7.443 | ||
| ProSiteProfiles | 113 | 147 | 35 | 5.568 | ||
| Gene3D | 132 | 210 | 79 | 3.5E-14 | ||
| ProSiteProfiles | 148 | 178 | 31 | 6.895 | ||
| Pfam | 153 | 175 | 23 | 0.032 | ||
| ProSiteProfiles | 179 | 213 | 35 | 12.003 | ||
| Pfam | 181 | 210 | 30 | 4.1E-8 | ||
| TIGRFAM | 181 | 210 | 30 | 7.6E-8 | ||
| Gene3D | 211 | 301 | 91 | 8.2E-13 | ||
| PANTHER | 214 | 299 | 86 | 3.5E-123 | – | |
| Pfam | 240 | 287 | 48 | 3.3E-7 | ||
| ProSiteProfiles | 241 | 275 | 35 | 10.819 | ||
| TIGRFAM | 243 | 276 | 34 | 1.1E-5 | ||
| PANTHER | 296 | 369 | 74 | 3.5E-123 | – | |
| Gene3D | 302 | 423 | 122 | 8.0E-28 | ||
| Pfam | 338 | 369 | 32 | 2.0E-5 | ||
| ProSiteProfiles | 342 | 372 | 31 | 10.972 | ||
| TIGRFAM | 344 | 375 | 32 | 2.0E-7 | ||
| PANTHER | 353 | 428 | 76 | 3.5E-123 | – | |
| Pfam | 372 | 419 | 48 | 3.0E-11 | ||
| ProSiteProfiles | 373 | 407 | 35 | 13.11 | ||
| TIGRFAM | 375 | 409 | 35 | 5.7E-9 | ||
| ProSiteProfiles | 408 | 442 | 35 | 5.448 | ||
| Gene3D | 424 | 539 | 116 | 1.0E-25 | ||
| PANTHER | 425 | 638 | 214 | 3.5E-123 | – | |
| ProSiteProfiles | 443 | 473 | 31 | 8.21 | ||
| Pfam | 448 | 473 | 26 | 5.0E-4 | ||
| TIGRFAM | 448 | 473 | 26 | 5.5E-4 | ||
| ProSiteProfiles | 474 | 508 | 35 | 10.709 | ||
| Pfam | 477 | 520 | 44 | 3.2E-9 | ||
| TIGRFAM | 477 | 510 | 34 | 1.1E-6 | ||
| ProSiteProfiles | 509 | 544 | 36 | 8.243 | ||
| TIGRFAM | 511 | 546 | 36 | 0.0023 | ||
| Gene3D | 540 | 668 | 129 | 1.0E-14 | ||
| ProSiteProfiles | 545 | 575 | 31 | 7.848 | ||
| Pfam | 549 | 572 | 24 | 0.014 | ||
| ProSiteProfiles | 577 | 607 | 31 | 5.897 | ||
| ProSiteProfiles | 610 | 645 | 36 | 5.568 | ||
| Pfam | 647 | 771 | 125 | 6.4E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi6g1v0157800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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