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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0166400 |
| Transcript ID | LotjaGi6g1v0166400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein; TAIR: AT4G27040.1 EAP30/Vps36 family protein; Swiss-Prot: sp|Q5M759|VP221_ARATH Vacuolar protein sorting-associated protein 22 homolog 1; TrEMBL-Plants: tr|G7IXK4|G7IXK4_MEDTR Vacuolar protein sorting-associated protein; Found in the gene: LotjaGi6g1v0166400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:45059006..45065782) extracted from Lotus japonicus Gifu genome v1.2.
TACCAAACGCTACCCAAGAGTCCACACAACATTGTGTTCTTTTTGTCAGAGACTTTTGAACACAAAACTGGGAACATGAA ATTGTACCTCGTCGTAGTTAATTTCTAAAACCCCTTCATCGTGTGTTTCCATCCATTCCGATCAGTCAAAACACCGCAGC TTCTCCATCAACGGTGATCCTCCGATGAATCTCCACCGTCAAAGAGGAATCACGTTGGTTCAAGGGTACCTCGGTCTCAT GTTGAATTAGAAAGCGAACTTTGATCATCCAAAACACTGCCCCAGAAATTCCAATTTGCAGAAACGATAATTGGGATATA GATTTGGCAAAATCACAATGAGAAGAAGGCCTGGAATTGGAGGGTTGCAGACAGCTGCTGCTGCAAGGGATCAATATCGG TTGCTGGGTGAGAATGTAGCCAAGATCAGAACCGATATGATGAAGGAGCAGCTTTCCACTTTTCGCTCTCAGCTTGAAGA TTTTGCTCGCAAACACAAGGTTGGTTTCTTTTTTTCTTCTTCTTTATACTTGGCCTTGTGTGGGTGTATACTGTATACTA AGTTTGTGGGGGCAATAAAGAGTTGATTTTTTGTTCTGGGGGTTGGAATTTTTCAACTGGGTCTCTGAAATTTAATGTTT TGAATGCAAGAGAAGTTGTTTTGATAATTTCTAGCATCTGGGTTTGGCTGTTTTTGAGTGGGAGTTGATGAAAGTTTGTA GCTCTGGAGATAGATTTGTTGTGCTGTTCTTGGATTCTGGTAAACTTCAATATAGTTGGGTGTCAATTGTGAGGTTAATT GCAGAAGTTGTGGTTGGAAACACAGCTGTTCCGGGGAGTTAACGGCATGATTGCAATCATTGTGTGGGAAAAGGATGGAT TTGATGTATTTGTAGCTATGATGTTGATTGCTGAGTGACGTAATGGCGATAATGTTTTGGTGGTTGCTATCAGCTTTTGC ATGCCAGGAGAGTTGTGTTCCGGGGTGTGCTTGAATAATTTGAAGGCCTGGCAAGTTGTAACTTCGGGGGCATGGTTGAC CAACAACTCGCGTTGTTCATGTCCTCTGATTTCTTATATCGGCCCTTTTAAAAAAGTCCTACTTCATATGTATAAACAGT TAATGATTAAATCAAGTCATGCTAATGGTTGATATCACTTGTTCAGAATGATATCCGCAAGAACCCTGCATTCAGATCAC AGTTTCATGAGATGTGTGCTAAAGTTGGAGTAGATCCTTTGGCCTCAAATAAGGGTTTCTGGGCAGAGCTGTTAGGAATT GGTGACTTCTACTATGAACTTGGTCGGTAATATCTTCCTTAACCTTGTTGACTTCCCCAACAAATGATTTTCTTAAGCAT GTATGGATCTTTTAAGTACTAATATTCATGTGCTATTATGAATTTATTATAGTTAAAGTGTAATACTGAGACTATCAAGA ATAAAATACAGGATAAGACAAGCAATGCTAGAATTATTAGTGTCTGAACTATACATAATTTTCTTATCCATAATTTGAAC TATATGAACATGGCTTGTATTTAGTATAACAAATTAAATTGAAGTAAGTAAGAATAACAGTTCTAGGATTCAATTTAAGG GAAGAAGACTAAAATTCAGGAAGCATTTTAAGAAATGTCGAAATGATAGGCTGAAAGGCATATATATCCGGATAGTTTAT GTTTCTGAAGTATGAAGGTAAAAGTTAGATAAAATGCCCCGATTAATCGCATTTACCGTTACACTGCAAGTGAACAAGAT ACTGAATTATTCTTATTTTTAATTGAAATATATCCCTTTATCACCAAGTACTGACAGTACATATTTATAGATCTAGAATC ATAGAATCTTTGTCCTGCCAGTACTGATTTTTTGACAAATGACAACCACCCATTGTTAAATTCAAGTACTGTCTTCCATA CTCAGAGTATCATGTATTCATGTTCAGCTTTTGTATCCTTTATTATAATGAACATTATCTTCGAAAGCTGTATAGTTTAC TCATGAGTGTTCTTTTTGTATATCAGCCTTTGGCCATGTCTCTATATTTAGTTTGCTAGGTATCCTAAGCTGGCTTAATA TTGTGAATACACCGACGCGGTGATAACTCTTGCACAGCCTTGTTGCTGTTGGATTTTAAAAACAAACTAAGCAGTGAGTT TGAGTTAGGTAGATTGTCAAGGGACAAGGAAGATTCTTAATGTTATTGCAAGTTGGCAACTAATGTTAGCTGTACTGAAA TAGATAGGTAAAACAACTGTGGTTTGCGGAAAAACATAGACTGGGGTTTAAATTAACAGTTGTTGTCCTAACATTGTGAA GAACATCTACGGCCTTAAAATAACTAATCTGGCATTTTATTAATAATTCAATGAATAACTGTTAAAGTTATTTTATCATT AACTAGACTCTATGATAAGATGTTCCTTATGAACATGGTGGGTGCACTGTGCTCGTGATGGTTTCACTCACATTGCATTA TAACTCAGTATGTTACAATTGTTAAACTATTTACTTTTCAAATTTATTAATTCATTGCCATTTTTTAATTTTTACTTATA TCCAAGCTGTTTAATTTCCCTATTTTCTTAGCACATTAACTGAGTTTTTTTTTTTTGGCTTGACAGGAGTACAAATAGTG GATATTTGCCTGGCCACTAGACCCCACAATGGAGGATTGATCAACCTGCAGGAACTCTGCAGTCTCCTTCGTCAAAGACG AAAAAGTGATCGTGGAGTTGTAACTGAGGATGATTGCTTGCGTGCTATCAGTAAGCTGAAGGTCTAGTGCTTTTGCATAC CCATAAACTCTTATGAACTAATCCTGCACTGTGAAAGTTGAATGACCATAACTAAGCAGTAATATCTCTTTCTTTACAAC CCTGTATATTGAATCTTTTATTACCTTGACATGCAATACCACACCTGACAAACATTTGGGATGTGGGATGGGAATATTTA TCCTTCCTGGACTAAAATATTTAATGATTATATGAGAAAAGATCATGTATTGTAATGGCCAAAACTGTTTATCACTAAAC CAAAAGAATTTCACTAATGTTTGAAACGTAAAACTGGGATACAAAAGGGTGGGAGGAGTCCATTTTTCTGGACAATCTTG GACTTGCTCTGATATCTGGCCATGAATTGTAAACAACCATCAGTTTTCTGAAACTAAACCAGGGAAATTCAAGAGGACAG AACTCTCAAATATGTATAATATGTTTAAAATTTTATATTAATAACTAAATCTATTTTTTAGAAAGAAAACTCTATATTGG AACGGCATTAGCCTCTGCTTCCACTTATGGCTGAATATTAAATAATGGATCATAGCACATATCTAAAGATGCTAGTGCTA TGATTAATCTTATCTTCATCTCATTGCATGTTTTAGTAAAACTGCCTAGTTTACTTATGGTTGGATTAAATAATATGGTG AGCCCAACTTGCATGTGTATTTGGGAAGAGCATATGGAGTGCACGTGTATGTGTGTCACTAATGCATTTTCCTTTTTTTA TAACTCTTCTTTCTAGATTATGAATCTTTGTTTCTCCATTTGCTGAGAGATTTGTTACATGTATCCTTCGTGACCCTGCA GTGTTTCATTTCATTTGATGCCAGTGTCACACATATTTCAGGTGTTAGGTAGTGGTTTTGAAGTTATTTCTGTTGGAAAG AGAAAACTTGTTCGCTCGGTTCCAACTGAATTAAACAAAGACCACAATGAAATTCTAGAACTTGCCCAGGTAACAGCAAT TTCTTCTTTTTTGATATGCTAATATATAAGGCTATAAGCGTATTTATGCGCCCCTTCCACTTTTCTGTTTTAAGAGTCAC AGGCTTATGAACCTATTGTAATTGCTTGATGAGGATAAATCTAAATTTTCTGAAAGACATTGATAAACTTATCGAATAGG ATGATACGCATCTAGTTGGATGATGTTCTCTTTTTGGCTTGAGAGTGGAAGTTGCGTACTGACTATATATTTAATCTACC CAGTAGCATGTAAATATTTTTGGTTGGGTTCCCTGTCCCTCGTTGTAAATATCAATAAAGAAAAAACTTGTCACACAGCT AATCCTTAATGATTTATATATGATCCATTATATCAACCATCAATCTCTACATTTAATGGTTGCTTCTTTGTAATAGCTCA TCAATTGATTCAATCCATCATCAAAATCTTGCAGTATCAGAAATTGCTGCTTGATAGGTAACCACTTAGTGTGATAGTTA GTTAGGTAGGGAGTTGTTTAGAGAGAAGAGAGTTATAAATAACAGAAAAGGGAGATTAGAGGGGGGTATGACTTGTATTG AGTGGGATTGTGCAGAGTTTCTTGGTCTATCGAATACTCGGAACTATTCTCGTATCCCTTTCTTAATCTAATTGATAGGT AATCTATGGTTACTTGGTTAGTTAGCAGAATAGTTAGGAAGTTATAGTACTTTAGTTAGAGAGTGAGAGATGAGGGATTG TAAATAACGGAAAAGGGAGAATAGAAGGGTATGTCTTGAGGTTAGAAAAGGAATTTTGGGGAGAGTGCCAGGTTTCTTGA ATATCTGCTGTAATAGGGTTTTCTATTAATGAGTAGTTTTTCTGCCCATCAATTGGTAGTAGAGCTCCAATCTTGGAGTT GTGGGTACTAGAAACACATTCAATTAGGAGGGAACTCAAGGATGAACATAAAGAGATACCGACATTTGAAGGAGGAAATG CTTATTAGTTGCTTATCAATGTGGGCCTGCATTTTGAGGCCTTGGTTATACCTAAGGAGAAGGAGCACTAGAGGCTGTGA AGGTTCTGCAGATGTTGCTTTCATGTGGTGGCTTGGGTGGAAATGTTATCCAAATGCAACTTGGTGGTTGAAGACCTTGC TCAAGAAGTTCCAGTGAAAGTTTGATGCTGGTATCCCAATCTGGGTTCCAGATGAGGACTTGGAATCTGTGGAGCAAGAA AGCAGAAGGAAAAGTGAAGTTTAGGAGAGTTTAAGGGAATGGTTTCACGGGATTCAGCCAATTATCTTCATCGTGGGATA TCATTGAGATATAGGAATCTGTGTCATAAAAAAAAATTCTACGATTCTTTATAGTATTGAAAGAGTCACTCATCCACTTA GGTATCTTATTGAACAAATATGGTGACGTTGTTAGGTTGGAAGTAAAAACAGATGAAATCAGATTGTTTAGCATCAAAGG ATGGGAGCTTTCTCTTACAGGAAGAGCAAGCGAAAAATGAGGACCAGGAACAGGAAAGGGTGCAAGAAATCAGCAAAGAA GATATAAAATAGGTGAAGATGGGGGGAGAAATTGAACAGATTAGAAAAATAAATGTGAAAGGATGTTTTCCGCGACTCCA GAATAGCACAAAGGTAGAAAGGAAAGGGAACGGTGTGTGTGTGGAATCCTCGGTTTGGTGTAGGACCGGCCTATGATCGC CAGCGGAGCCACTGGATTTAGATTTTACCAAGGAGGGAATGGGTCAATAGCTACAACCGAAAATTTAGATTAGAGGTAGG TATCACTTGTATTGAGGGGGACTGTGGAGAGTTTCAGGGTCTCTTGAATACTCAAAGCCATTCTTGTAGACCTTTATCAG TTATCAGTGGAACCCACATTGGATCAGTGCTAGAAATTCCTTTGATTCAATAAACAGAGTTTTCTCTTACCAGTTTCCAT CACTGTTGGGATGAAGAGACACTCCTTGGGTTATTACCTAAATCTGGTGTGTATTCCGTCTAATTTTGACTCCCTTGCTT TTGATCTTGTCTTCTCGGTAATAATAATGTGTACTTTTATAAACTGATAGTGCTCAGAGGCAATTAAAATGTCAAGTTTA GCTCAAAGGAAGTTCCATCCATTTGTGTTATTTAATTTGATAGAAAGTAATTAGAACTTGGATTCCTTTTGTTGAAGCAT GAAAAGATTTACTTTGATTGCTTATCCACCAGTGTAACAAAATTTGCTGTGCAATCAGTTGGCAATAGACTAGTCTTTTT AACATTTACATTACACTTTCTTCAGGCTCAAGGGTTTGTGACAGTCGATGAAGTAGAGAGGCGGCTATCCTGGACCTCGG GTCGTGCCATTGATGCCCTTGACACATTACTTGATGTAAGATAACTAAAACTTCTCTAAGAATAATCCTTTTCTTCTTTA TCTAATAATATATATCAATCTCAAATAACATGGAATAATGAACACTGTGAACTAATGCAGGAGGGACTTGCAATGATCGA TGATGGCCATAGGGATGGTAAACGGCGATACTGGTTTCCTTGTGTATCTCCCATCTCATCTTTGATAGGAATTGATTCCT GACAAATTTGTTAAAAAGAAACTGAGGTTTATTAGTTAGGGACAGAGATTTAGATGTTAATGATCTATCTTTGAATTTAA TGTGTGACAATATTATGACATTGTGTGAGTTTGATTCATGTACCCACATGGTGGGAAAAGGGTTGTATCACTTGTATGTT GTTTATGGAAACTGAGGTCAACTTTTTTTTAAGACCTATATTTTTATTGTTGCAAGCTTCCATTTGGTTATGCCTTTTGA TTTCTTGGTTATTCTTGCCCTAAAATGTATGATTACTTCTGTACATGTTTATCTAGTTTTTGCAAGTGTATGGTAATTGG GAACTGGAAAATGTATGCTTCAGCTTCAAAGTGGTCCTTGCTTTATGATAAGGTGGCTTCTGTTTTTCCATACATGAAAG AATAATAAATTTGATGACATTCACATGGTTGAGGTGAAAGCAACTCTGGCAAGAAAA
CDS sequence (LotjaGi6g1v0166400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAAGAAGGCCTGGAATTGGAGGGTTGCAGACAGCTGCTGCTGCAAGGGATCAATATCGGTTGCTGGGTGAGAATGT AGCCAAGATCAGAACCGATATGATGAAGGAGCAGCTTTCCACTTTTCGCTCTCAGCTTGAAGATTTTGCTCGCAAACACA AGAATGATATCCGCAAGAACCCTGCATTCAGATCACAGTTTCATGAGATGTGTGCTAAAGTTGGAGTAGATCCTTTGGCC TCAAATAAGGGTTTCTGGGCAGAGCTGTTAGGAATTGGTGACTTCTACTATGAACTTGGAGTACAAATAGTGGATATTTG CCTGGCCACTAGACCCCACAATGGAGGATTGATCAACCTGCAGGAACTCTGCAGTCTCCTTCGTCAAAGACGAAAAAGTG ATCGTGGAGTTGTAACTGAGGATGATTGCTTGCGTGCTATCAGTAAGCTGAAGGTGTTAGGTAGTGGTTTTGAAGTTATT TCTGTTGGAAAGAGAAAACTTGTTCGCTCGGTTCCAACTGAATTAAACAAAGACCACAATGAAATTCTAGAACTTGCCCA GGCTCAAGGGTTTGTGACAGTCGATGAAGTAGAGAGGCGGCTATCCTGGACCTCGGGTCGTGCCATTGATGCCCTTGACA CATTACTTGATGAGGGACTTGCAATGATCGATGATGGCCATAGGGATGGTAAACGGCGATACTGGTTTCCTTGTGTATCT CCCATCTCATCTTTGATAGGAATTGATTCCTGA
Protein sequence (LotjaGi6g1v0166400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRRPGIGGLQTAAAARDQYRLLGENVAKIRTDMMKEQLSTFRSQLEDFARKHKNDIRKNPAFRSQFHEMCAKVGVDPLA SNKGFWAELLGIGDFYYELGVQIVDICLATRPHNGGLINLQELCSLLRQRRKSDRGVVTEDDCLRAISKLKVLGSGFEVI SVGKRKLVRSVPTELNKDHNEILELAQAQGFVTVDEVERRLSWTSGRAIDALDTLLDEGLAMIDDGHRDGKRRYWFPCVS PISSLIGIDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 240 | 240 | 1.8E-100 | – | |
| PIRSF | 1 | 244 | 244 | 9.0E-94 | ||
| PANTHER | 1 | 240 | 240 | 1.8E-100 | ||
| Pfam | 6 | 225 | 220 | 2.4E-77 | ||
| SUPERFAMILY | 24 | 174 | 151 | 4.84E-52 | ||
| Gene3D | 91 | 171 | 81 | 1.9E-35 | ||
| Gene3D | 172 | 248 | 77 | 6.2E-25 | ||
| SUPERFAMILY | 175 | 238 | 64 | 8.65E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | ESCRT II complex | An endosomal sorting complex required for transport and functions downstream of ESCRT I complex. It consists of the class E vacuolar protein sorting (Vps) proteins and is required for the membrane recruitment of ESCRT III complex and binds to ubiquitinated cargoes. | ||
| Biological process | Multivesicular body sorting pathway | A vesicle-mediated transport process in which transmembrane proteins are ubiquitylated to facilitate their entry into luminal vesicles of multivesicular bodies (MVBs); upon subsequent fusion of MVBs with lysosomes or vacuoles, the cargo proteins are degraded. |
Expression pattern of LotjaGi6g1v0166400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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