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LotjaGi6g1v0173500.1

Overview

Field Value
Gene ID LotjaGi6g1v0173500
Transcript ID LotjaGi6g1v0173500.1
Lotus japonicus genome version Gifu v1.2
Description Phytochelatin synthase; TAIR: AT1G03980.3 phytochelatin synthase 2; Swiss-Prot: sp|Q2TSC7|PCS1_LOTJA Glutathione gamma-glutamylcysteinyltransferase 1; TrEMBL-Plants: tr|I3T4M3|I3T4M3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0173500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:46240014..46245465) extracted from Lotus japonicus Gifu genome v1.2.

ATTTTAAATTCACTGCTCCTCTCATCAAAACCTCATTCCACCGCTACACCCACCCAAAACTCCTCCCTGTGCCGCCGTGT TCCGCCGTTGAGGTTTGTTTTGTTGTTCAGAATGACTGCGACCGAGAAAGTGGCCATGGCGGGCTTTTATCGACGCCTTC TTCCTTCCCCACCTGCCATCGATTTCGGTTCCTTTCAAGGCAAGGTTAGTCCATAATACCTCGTTTCGTTAGAGCTTAAT TAGTCCCCAAAATCACAAACTGCATGTATTAATCAGTACTTGTTAGGAGGTCCAATTTCACATGTATTGCATAGTTAGGA ATACCGATGTAATTTTCATGTCCCCGAGGGTTAACTCAAGTGGTAAGAGCTAGACAATTGTATAGTGTTGGGTCAGGTTC AAATACTGAGGTGTATTGCATAGTGTTGGGTTTAAACTTTAAAGTACTAGACAATTGACATGGTGAAAAAGTATTGAAAT AAAAAGATAGAAACTGGAATGGAGGAGTTGGTACCATAGAAGCTAGCAAGCAAGCTTGAACTTACTATTTATAGGCTTCT TACACATCGACTATACCATGTCGGTTTACACATCCTAGAGATTACTTGTTAATTCTAGTATACATGAGAATGCTTTCTGT AAAACTCTAGAAACATGTGAAATATGGCTACTATTATTTTAACACTTTGTATAAACTTCTATAAATTTTCATCAATTATC AACATATAGTTAGGAACACCGATGAAATTTTCATGTCTCCGAGGGTTAGCTCAATGGTAAGAGCTAGAGGACATTAGAAT TGGGGGGAATGAGGGGTGAAGGGGCCAGGTTCAAATCCTGAGGTGGGACTAATTTTTTTGAAGCAAAATTGAACACTTTT CATTAACTGGACAAATCAGACATAGCTGCATCAATAATGTGTGGAGGAAAACTTTCCAACCAGATAAAACTAGGAGAAGA AACAGCAAGATTAGGTAAACAGTGGGCAACACTATTTTGCTGCCTAAAGATGTAGGGAAGGAAGAGAATCTTCAAGCCAT CCGCAACATCATGACAATCATCTAGTAGGAGCTGCAATTCCGGGTAGACATTATCTGAATAGAACCCTTTAGCAATGGTG AGGGAATCTGTTTCAACCTGGAGTTCAGAAAAACCCTGTTGCAAAGTAATCTCAAGAGCCCATCTTAAAGCCAAAGCCTC TCCAATTGAGATATCCACCCTTATTTTCAGTCTGTGCATAGCAGCCAAGAAAACAGAGGTGAGACTAATTTACTAACATT ACTAACAAGTAACATTTGCCTATAAAAAAATGAAACTTTCATGTTTCAGACTACTTGTTGACTAATTTGACTGTTTAACA TGTATAATTTAAATCCAGTGGTTTAATGGCTGTATGTATATGTAACAGCATAAATTAGATTTTCGAGCATGTTTTAGTTC GGCTTATTTTTTATCAGAAACACTTTTGGTACCGATAAGCTACTGATAACTCGAGAATTGATTCACCATAAGCTAAAAGA TTTCCAGGATATTTGTTGACTAATTTGACACTTTCGATTTCAGCAACTTTTTCGTGAAGCCATTCTAAACGGAAACATGG AAGGCTTTCCCAGGTTGGTTTCCTGTTTCCAAACACAATCCGAGCTTGCCTTTTGCGGCCTCGCAAGCTTGTCCATGGTC CTCAATGCTCTTGGCATTGATCCTGGCAGAAAATGGAAAGGTATATGTTCTGCATTTCTCAAAATTTACTGTTTTTCTTA TTGAAACAGCTGAGTACAATATCTGTTCTGCTGCAAAAATGTCTTTTTATGTTGCATTGCATGCGTTTAAAGACTCATGC ATTGTGAAATTTTAATTACAATTTAATGGTTGAATCAAGTGGAGGATGAAGATTTGTGCTTCTATTGTGAAATTTATTTG CATTTGGGTGATTTATATACAGGACCTTGGAGATGGTTTGATGGATATATGTTGGACTATTGCGGACCTCTGGACAAGAT CAAAACTGGAGGCATCTCATTTGAGAATCTTGTATCTTTGGCTCATTGCACTGGAGCAAAAGTTGAAGCCTTCCATGCAA GCCATAGCAGTATCGCTGATTTTCGTAAATGTGTCATGAAATGTTCAACTTCTGATGATTGTCATGTAATCTCATCATAC CACAGAAAAGCTCTCAAACAAGTATGTGTTTTGGTTTTTCTAACTTTTTTTTTGTGGTTTTTCTAACTTTGACATCGTAG GAAATGCAATAACTTTCTAGGTTTGATCATTATGTTATACCAACAGGAAATGCGTATCATATCATATAATTCTCCATTAT TGAATCCACTTCTTCCTATGAATTTTTTTTAATACACAATATTGGTGCATGTATTTCATTCTGGCAAAATTGGTGAGAAT GTTCAGTTGAATTTATTTTCATGACAGACAGGAGCTGGTCACTATTCTCCTATTGGAGGCTATCATGCTGGAAAAGACAT GGTGCTTGTTTTGGATGTTGCTCGTTTCAAGTATCCTCCCTTTTGGATCCCACTTACGCATCTTTGGGAAGGCATGAGTT ATATTAATGAATTCACTGGAAAATCCAGAGGGTAAAGTTTTTTGTTTATGCTAATTTTATTGACCTTGTAGTATGATTAA TCCCATTGTTAGAATGTTATTGAAGTTTGAGATCAATAACTGCAAATCTTGTTGCCCCAGGTCAGCTTATGAATAAAACA ACAACAAAATGCTTATCCCACTGTGTGAGGTAGGCTATATGTGTTAGGATTTAGTAACCCTAGTTTAATTTTTTAGTAAC CCTAGCAGCAACCACTGGGTGAGGTACACCATTACACTTGATCAAAAACCAAATTTTGTTCCATATGGTCCCCTTTAATA ATATTTTAGAACATCCTTTTTAGCCTCCCTCTACACCTCTTCAAATGACTAAGAACATGTTATTAACCTTTCTCACCGTT GCCTCCAAAGGTCTTCACCTGAACCACCTTAATCAATCTTCCTCTCAGGGTCCGTTTCACATCAATATCTCCTCTAATAC GACATTGTATATCTTGTCATTCTAGTGTGACAACTCATCCGTCCAGCTAATGAATAAAATGAATTATTTTCGTAGAAGAA TTTAAATATCTATGTAAGGACCTGGCCAATTTAAGTGATGAGAAAATTTTATGGTTTCTCTTTTTGTTACAAGGTTTAAA CACTGTTTGACCATCTTTTTAGTGTGAAGTATATATATGAAATCTGGCTTTATCCTCTTCAGGTTCATGCTTATATCAAA GCCTCATAGGGAACCTGACATGCTTGTTACTCAGGTATTTCTCATTCCTTTATATAGTGAGTCAGAATTTGACACTTTTA AAAGCATACTGTAAATGACATTGTTGCTGGTGATGGGTTGGATGTGTCACCTACTTCTGCTGATCTTGCAGAGCTGCAAA CACGAGAGTTTGAGTAGTATTGAAAAATTCCTAATCGATGATGTTCCTTCTCTATTAAAATCAGAGGATGTGAAAGACAT CTGTAAGGTTCTTTCAGTTATAGTCACATCGCTACCATCTAACTTTGAAGAATTCATCAAATGGGTTGCGGAGATCAGGA GGCGAGAGGATGGTGGTCCAAGCTTAAGTGAAGAGGAGAAAACACGAGCTGTTGTCAAGGTTTGATACATTTTATCTCAA CTAGCCAACCATAGTTCTCTCCAGCACTGTTAAGAACGTTTGGATACACGACTATTTTTCACGAGATCAATTGATTCCAA GAGAAGCTACTCCTAGCTAGTAGCTTTTGTGGTAGCTAGGAGAATTGATTCTGGAAGATCTGAACGTGAATCAAAACATG CAAATCAACTTCAGTTATTTCATTTTACTTCTATTATTCTCATGTGTTAACTGATTTGTTATGCAGGAAGAGGTATTGAC ACAGGTGCAGAGGACGAGACTTTTCAAACATGTGGCCTCGTTTTTGTCACATTCTAGCATAACTAAGTCCATAAGGATGC ATCCAGCTAGCACTGATGTGTTAACAGTGCTTCTATTGTCTTTACCATCTACAACCTGGGCTGGTATCACAGATGAGAAG CTTTTGAGGGAAATTCACGACCTGGTTTCAACTGAAAATCTTCCTGCTTTGCTTCAAGAAGAGGTACTTAATACTTATCT TTCATTTGTTGTTTTCTAAAATAAAATAAAAACTCATCTTTATCTTTCTTCCCCCTTTCCCTGGGATGATGTCCCTTGGG AAACATAATCTTTTGATGCCTGTGAGTAGCGATAATCATTCCCATTATTTAATCATGATGCTCAGGTATGCTTCAAAGCT TTTATACTGTACCCCTTGGAAGGGGGTACTTTCTTGATACCGCTTGATGTATCTGCAGTGCTCCTCTGGGACAGAATGTT TCTGACTCATGTTTTAAATACTTAACAAGTCAAATCACAATATTGTTATCAAATCACAATATTGTTAATGTTGAAAGTCT GAAATTCATTAAGACACCTAAATTTTCTTTAACCCTAAGATATTAAGATAATATTTTTTTAATAAATAATAAATTTTCTA AAAATACAAAATCCTAATCTGATAAGAAACCTTAACATCGATAATATGAAAATATTTCTTCTTAAAAAATATGGATGTCA TTTGGCTAAAGTGCTGCTTGTGACATGAAAAACTTCAAATTCTTAATTATCTGATGTGCCTTACAACATGTTTGGTTCAT GTTGAAATCTTCTCCTACCAATTTTGGGTTTCTGAACATGTACTTAGTGCATGTTTGGTTGCATAGATTCCAAAATTACG TTCATCCATAATTTACAAGATATAGTGTCTTGGCTAATGTGATTTGGAGTGTGATTCCAACACATCCAAGCATGCTGTTA GGTTGGTGTATGCGTGTTATAGTGCGTTATTAACTGGTCCACAAAAAATGCTTTCCTGGTCTTGCATAGGAGCACTTAAC TTTTGCTAATTTTACTCCATCTTCATTCGTCAACTTGAACTTGTTATGAAATTTTGCATTTCAGGTTTTGCATTTAAGAC GTCAGCTACACACTCTCAAGAGATGTCAAGAAGGCAAGGTAGATGGGGATCTTCGTGTACCTTTGTCTTAGCAGCTCCTC CTTTTTTATTCATCCATAACGAGGCTTTGTTTGAGAACCAGGGTCTCATTTTAATACACTAGGGTTATTTATACACCAAG GATAAGAACTACTCCCTCCATTTCAATACACTTGGTTATTTTATCACCAAGTTGATAATTGAATTAGTAACTGCGATTCT GAAAGAAAATGATATTGATAGTGAAAGATATTGTCCATGTTCAATCTATAGCTGCTACATGTACATAACAGAACAAAAGA AAAAAGGATGAGCATGCTACATACAAACTGAGCATGCCTCAAATAAAGCTTTGGTTCATTTTGAAAGAGTGCAGAGACAC AAAGATTTAGTG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0173500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACTGCGACCGAGAAAGTGGCCATGGCGGGCTTTTATCGACGCCTTCTTCCTTCCCCACCTGCCATCGATTTCGGTTC CTTTCAAGGCAAGCAACTTTTTCGTGAAGCCATTCTAAACGGAAACATGGAAGGCTTTCCCAGGTTGGTTTCCTGTTTCC AAACACAATCCGAGCTTGCCTTTTGCGGCCTCGCAAGCTTGTCCATGGTCCTCAATGCTCTTGGCATTGATCCTGGCAGA AAATGGAAAGGACCTTGGAGATGGTTTGATGGATATATGTTGGACTATTGCGGACCTCTGGACAAGATCAAAACTGGAGG CATCTCATTTGAGAATCTTGTATCTTTGGCTCATTGCACTGGAGCAAAAGTTGAAGCCTTCCATGCAAGCCATAGCAGTA TCGCTGATTTTCGTAAATGTGTCATGAAATGTTCAACTTCTGATGATTGTCATGTAATCTCATCATACCACAGAAAAGCT CTCAAACAAACAGGAGCTGGTCACTATTCTCCTATTGGAGGCTATCATGCTGGAAAAGACATGGTGCTTGTTTTGGATGT TGCTCGTTTCAAGTATCCTCCCTTTTGGATCCCACTTACGCATCTTTGGGAAGGCATGAGTTATATTAATGAATTCACTG GAAAATCCAGAGGGTTCATGCTTATATCAAAGCCTCATAGGGAACCTGACATGCTTGTTACTCAGAGCTGCAAACACGAG AGTTTGAGTAGTATTGAAAAATTCCTAATCGATGATGTTCCTTCTCTATTAAAATCAGAGGATGTGAAAGACATCTGTAA GGTTCTTTCAGTTATAGTCACATCGCTACCATCTAACTTTGAAGAATTCATCAAATGGGTTGCGGAGATCAGGAGGCGAG AGGATGGTGGTCCAAGCTTAAGTGAAGAGGAGAAAACACGAGCTGTTGTCAAGGAAGAGGTATTGACACAGGTGCAGAGG ACGAGACTTTTCAAACATGTGGCCTCGTTTTTGTCACATTCTAGCATAACTAAGTCCATAAGGATGCATCCAGCTAGCAC TGATGTGTTAACAGTGCTTCTATTGTCTTTACCATCTACAACCTGGGCTGGTATCACAGATGAGAAGCTTTTGAGGGAAA TTCACGACCTGGTTTCAACTGAAAATCTTCCTGCTTTGCTTCAAGAAGAGGTTTTGCATTTAAGACGTCAGCTACACACT CTCAAGAGATGTCAAGAAGGCAAGGTAGATGGGGATCTTCGTGTACCTTTGTCTTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0173500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTATEKVAMAGFYRRLLPSPPAIDFGSFQGKQLFREAILNGNMEGFPRLVSCFQTQSELAFCGLASLSMVLNALGIDPGR KWKGPWRWFDGYMLDYCGPLDKIKTGGISFENLVSLAHCTGAKVEAFHASHSSIADFRKCVMKCSTSDDCHVISSYHRKA LKQTGAGHYSPIGGYHAGKDMVLVLDVARFKYPPFWIPLTHLWEGMSYINEFTGKSRGFMLISKPHREPDMLVTQSCKHE SLSSIEKFLIDDVPSLLKSEDVKDICKVLSVIVTSLPSNFEEFIKWVAEIRRREDGGPSLSEEEKTRAVVKEEVLTQVQR TRLFKHVASFLSHSSITKSIRMHPASTDVLTVLLLSLPSTTWAGITDEKLLREIHDLVSTENLPALLQEEVLHLRRQLHT LKRCQEGKVDGDLRVPLS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51443
7 227 221 45.521
IPR007719
PANTHER
PTHR33447:SF2
10 335 326 4.5E-175 –
PANTHER
PTHR33447
10 335 326 4.5E-175
IPR040409
Pfam
PF05023
12 222 211 2.7E-80
IPR007719
SUPERFAMILY
SSF54001
19 223 205 1.77E-70
IPR038765
Gene3D
G3DSA:3.90.70.30
22 228 207 9.2E-73
IPR038156
Pfam
PF09328
227 336 110 1.6E-45
IPR015407
PANTHER
PTHR33447:SF2
334 410 77 4.5E-175 –
PANTHER
PTHR33447
334 410 77 4.5E-175
IPR040409
Pfam
PF09328
336 398 63 8.9E-26
IPR015407

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0010038
Biological process Response to metal ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus.
Subterm of
GO:0016756
Molecular function Glutathione gamma-glutamylcysteinyltransferase activity Catalysis of the reaction: glutathione + Glu(-Cys)(n)-Gly = Gly + Glu(-Cys)(n+1)-Gly.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of
GO:0046938
Biological process Phytochelatin biosynthetic process The chemical reactions and pathways resulting in the formation of phytochelatins, any of a group of peptides that bind metals (Cd, Zn, Cu, Pb, Hg) in thiolate coordination complexes. The structure is of the type (gamma-glutamyl-cysteinyl)n-glycine, where n is 2 to 11.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0173500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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