Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0180600 |
| Transcript ID | LotjaGi6g1v0180600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT5G19430.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q99590|SCAFB_HUMAN Protein SCAF11; TrEMBL-Plants: tr|I3SBA7|I3SBA7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0180600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:47223268..47229738) extracted from Lotus japonicus Gifu genome v1.2.
GTTGGATCTGAGAATCTTGGAATATTCTTTTATTGGACGGTTAAGATTAAGTGATGATAAAAAGGATAAAAATGTAAATT TATAATCATCCTCATCTTCCCAATCCAGTGCTCCACCTGACCAGCGGCGGGCCGCCGCCACCTCTTGACCTTCACCGCCG TCGCCCCTCTGGCGATTCACAGTTTCAGAACCTCTCCCCCACCTCATCAAAACCCAGATCGGAGATGCAACAAATATCCA GAGAGGTGAAGCTCTGCACCTCTCTGTTTCCTCACCCATCCTCCATATCCAGTGTTTCGATCTCTCTATCTCCCCCTCTT CTCCACCATAACCATTTCTGGTCTCCGTCTCTGAAAATCAGGTCTTGGGGTGTGGGTCGATTTGAGTTGTGGCTTGCGGT AGGGATGGGGTTGAGGAAAAGGATGCTTTCTTCGTTGTAAAAAAGGGAGATGTTGTTGGTGTCTACAAGTCTTTCAGTGA CATTCAACCTCTACTTGCATCTTCTGCATGTCTTTTTTTTCAACCTCCTTGATGCAAAGTTTTTGTCTTTAGATTGTTTC TGTATTTGGGTCGGTGTGTCTGTGATGTAAAACTTGATTCAAACTTGTGGGGTTGGCTTTTGCTTCACTTCCTTCTTCGT TTTGCATTTCTCTGTTAACAACCAAAATCGCTTCTCTTGAGTTCCTGATCTATAAACCTTGCTTGCTTTCTTAGGTGCGT GCTTCATAATCTTCTCCTCTACTATCACATCTGCTTCGGAATGTGAGTGATTTTTGCTTTCTTGTTTGAATTTTTTTGTT AAGGGTTTTGGTTTGGTGTGCTTGCAGATCTTACCTTCATGGGTCCTTGATAATGATGATAAAAAAGAAGAAGGTGAAGT GATGAATTTCATGGGTTTCTGGCTATGTTTCTGGATGTGGGTACAGGGCCGGTGGTGGTGTTAGGTGTGGAGAGAGGAGA TGAAGGAGAGTGAAGAGGGTGAGAGATTAGGGAACGGTCTGGATGCACGGAGGGAGGAGAAAGTTGGAGAGAAGAACAGG AAGGGGAAAAGTCCAGAATAACCCTTGGTCCACCGGTGGACCAGTTTGAAACTTGCCCACCCTAGTGGGCACCTCCAATA AATAATAGGGTTAAAATCTATAATCGTCCCTGTACTTTGACCGAGTTTTGAAAACCGTCCTTCGCCGGAAAATTATCTGA AAACCATTCTCAGAATATTGAAAATAATTTCAACCCATCCCTCCGGCCGCCTCAGGTCCGGCCAGCTCCTTACGTGGCTG TCCACGTCAATTGGGTTAAAACATATAATCGTCCCTGCACTTTGAGCGAGTTTTGAAAACCGTCCCTCGCCGAAAAATTA TCTGAAAACCATCCTCAGACTATTGAAAATAATTTCAACTCATCCTACAAAATGCATAGCAACACAGGTCATGAACAAGC AACACATGGTGATGAACAAGCATGCATAATTTCAAGCAAATTTCAAGTTTCAAGCATCACTAAACCCAAATCGCACACTG TCAGTTCGAACAAACGAAACCCTAAAATAGAAACAAGGTAGAAACAATCCGATTCAATTCCAAAATAGAAACCAACAACA ACAACACACAACTCGCAAAACCAACAACAACACATGCTGCTCGCAATTCGTATTCAACACCCTCTCAACAACAAAAACCC TAATTTTCAACGGTTAAATGAGAAGGATTGAGAAAAAACCTCACAAGCTTCCTTCCCAGTTCTTCGTCGCAACCTCGGTG TTCTTCGTCCGAGGATGGTTTTCAGATAATTTTCCGGCGAGGGACGGTTTTCAAAACTCGCTCAAAGTACATGGACGATT ATATAAAAAAATTCCACGTCGGGTCTCATTAATTGACGTGGACGGCCAAGTCAGTGATTGCCGGACCTGAGGCTGTCGGA GGGACGGATCAAAATTTTTTTTTAAAAGTCTGAGGATGGTTTTCAGATAATTTTCCGGCGAGAGACGGTTTTCAAAACTC GCTCAAAGTTTAGGGACGGTTATAGTTTTTAATCCTAAATAATAACATTAAAACATAAAATTTGTGATTGTAGAATGTTT GAAAATAAAAAAACCAAAACTATATAAAAACGTGTCGTGCTTACATTTTGGTCCTTGTTTGAATAGAATAGGGATTATCA TTCTCATTCCACTGTTCCCTTCTTCCTCTTTGTGCCCTCTGCGGCATCTCAGAATCATTCTTCAGCATCTCTCCCATATT CTCTCCCTCTTTCCTCCTCTTTTATCTCCCCTGCTTTTCTTATACTTCTCCACACACACACAGACACCTCTAGTTCTGCA ACATCTATCTACCTTCTCGATCTGTCACTATGACTTCATCACTCGTGCAGATCCAAGACGAGGAGCAGGTCGTCCTCACC CACGATTTTCATGATCTTTCCATCGAAGATCATCTGGTATTTTTTTCCCTTCCTTCTAGTTAATCGGTATGCATATTTCT TCCTCCTCGTTAATCGCGTGCTTTGTTTTTATCATGTAACTAACATTTAGGTTTCCCATTTTTTTTGGGGATACCCAATT GGGTTTTCTTATCAAAGTTTCAAAATTGTTTTCTGGGTCTTGTTTATTTTTGTCAATTACTGAATTTTGTTGATGCTCGA TTTTTGGGGTTGTTTTGTGTTGTGAATGGAATTTGAGAATTGATGGCCTTATTGCTGATTCCATGGTGATGCTCAGGTTG AAAAGGGGAGTGATGAAGAGACTCACAAAGGGGGATTTGGAAACCATGGGGGAATATGTGCTATTTGCTTGGATAAGATA GTGCTGCAGGAGACTGCTCTTGTTAAAGGTTGCGAGCATGCTTACTGGTTTGTCTAAAGTCTAAACCACCTCTATTGTAC TTTTTATATTTAACTAATTAAGTTTATGGAAAACATGCTTGCTTGCTTATGATATGTTTACTTTCAAATTGCTATTAGTT TTGGATTAATTGGGATTTTCAATACCAATTGTTGCGCTTAGGGAACATGGATTAGTGCCACCTTTTAAACGGTGGTGTCT TTTATTCTGTCAAACTAAATAAAGACCAACACTGCTGTAAATGTTGCTTAGTATGTTATATGTTTAGTTATCCTGATGAA TGAGGACTGGTTCATTTGATTGGAGATGGAGTATGTTTCTCTTTTATGTTGGCGCTTGAAATGTTGCCTATGTTTAGACT TTTTTCTATAACTTATGTTTGAGATTTGAGAATATTTTAAAGTCAATGATAAAAAAACACATGGCTTTAGTGCCTTTCTG TATGCAACTTGGATTTGTGTGTAACATCAATTTGTGAGTTTGTTATTAGTTTGTCTCACTAGTAAGAAAAAACTTTATAT TAGTTCAGTTAGTATGTAATTGGGTTGGGCATTATGGATTTCCACAAGATCGATAGCAGTGTTACCAAATCGCGATCGCG GACCATCGCGGTGAGCCAAAAATCCTCTATTTCGGCCGCTATTTGGTGGCAAATAGCGGGAATAGCGCGCTATAGCGGGC AATAGCGGCGTCGCGCCGCTATAACCGCTATTTGATAACACTGTTCGATAGGAGATCTATCATGACTGATGCAATCATGC GTAATGTAATTTCAGTTAGTATGTAAATTGTTTTTCATCATAAGGTCTTTGAGATAGCAAGATGCGAGAGCACTTTGGAT TGAGCTTGAAGCCTGGACATGACTTGGATTGAACTTATGAGTTATGACCTCTTTGTCATAGAGGTTATGACATTATGTCT GGACTCTGGACTAATTTTTCTATAAGAACAAGCTGTTAGCTGAAGACATATAAATATCGACCTACTAGGTTTAGCTTTCA TATGATTGTTGTTAGCTTTATAGGCTTACACCTAACAGTTGTCTAATGACATGGAAATCTATATAGGTTTTACCTAGCAT GTATTTGGTATTGATAGCATACTTACGAACACCATCATATTTATGAGTGTCATCTGGTTTAGCATGTAGTTAATAAAGTC TTGCTTGATCTTTTTGTAGGAATGAAAGAAAATTTTCATTGTTCATAATTTACATCATATCATGTCCATTGAAGTTATCC AAGTTAGTTTATAGGTGATGGTACAATTACTGAACTACATATTGAAAGTGAAATTATGGAAGATGTCAAACTACCGTGGT GGAGGAATCTAGGATTGTTTGCAAATTGAGATTTTATGTTATATTTCTTTTAACTAGTGAATGAGCTTGAATTCAGCTCT GCATCAAGTTGATCTGATTTGTATTGGTTCTGCATCAGTGGGAGTGAAACCCATTTGGTCCAAAATCTGAATAGATCGCT AATGTTTTGTAGTGGATGTATTTTTGTTATTTTTTAATGCTTATAAGTTATAACCCTACTTCCGGTGTTAGGGAAGTTGC TGCACATATCAACCTAAAAGAGGAGCTTTAAATGATATGCATTATTACTTTTCTGTCTTAAATGTATAATTATCTTTTGG CTAATTGATGGTTAGTGCAGTAGACTTTTGGCAGTTGTAGTCATTGTTTGCCAATGTAGGTTCATTCACCTAATCATCCT TCTATTCATGACCAAGGAAACCTCCTCTCACCTTAAACTTTATATACTGAGAAATAAAATGTGCCTATTGCTTTAGGAGA AAATATTTTTGCCAACTGTTTATTGCACTCAAACACATCACTCATTTATTAGACTCTTTCAGCCCTTAATTTGGAGGATC TTGGTATGTAATTACCACTTGTTAATGTCCCTTTTAGGGCGTCTGATAAAATTGGTGTCATATTTTCTTATTTAAGTGAT GTTCTGATGTATATTTGTTGAGTTTGCTTGAACTACATTGTTTTTTTTTTGCTACATTTCCTTTCATTCAAGTGACTGTT CAGATTTTGAGGTTTAGAGATTATTTTCTGAGATGTTTGCATATAACTTCTTTGAATTGACATGATTATACTTAATTTTG TGTAGTGTAACGTGCATCCTTCGCTGGGCCACATACAACAATAAAGTTACGTGCCCTCAGTGCAAAAATCCATTTGAGTT CCTCAATGTCCATCGCTCACTTGATGGCAGGTAATAACTGCACTTTTCGCTGTGGTTTTTATTTGTGACTTCTGATTTAT AGTTTATGCTGCTTCTGTTGAATTGAGAGTGGAAAGAGTGATGCTATTTTTGTGTAGATCAGTCAGCTACATCAATCAGT TGATGCCGTTATGGTTCTACCAGCAACTATATCTTCATTTTTACTAGTCAACTGAAGCTGAATTTGTTGGCAATTAGGTA GCCAGTAATTTGGGTCTAAGTGCCCTTCCTCTTTAGCATGAGAGTCTTTCGTTGTGAGGGATAATTAAAGGACGTAGAAG AGGGATAATCAAAAGTGAAATTGTGTTCTGGATATTGAGATATTAGCTATCTTGTTTTAAATTTTGGTAGTTTATTTTTG TCTAACTTCGTGTTCATAATTCTTGACCTTTTATACTGTGACAGCATTGAGGATTACATGTTTGAGGAAAGTGTTTGCCT ACTCCTTCGGGCCAAATGGTTCAAACCTTTAACTGTCGAGGACCATGTGGTGGTTCATGAAGATACTTTATTAGATGAAC TTGAAGATTATTATTATCATTATGAGGAGGATGACGAAGATCTAGATGATGCTTACTATGGTGGCTCGTCAAGTTTCCGC ATTGGCAACCGTAGATGGGGAGACAATGGTTATGTAAGAGCTGGGCGTCAAGAAGCTCGGCCAGTCCATAGATCAAACAC TGATAATTCAGGAGCAAGTTCGGGAGCAAGTTCATCCCGCCAGCCAAAGAAGAAAGAGGCTGCAAAAAGTGCTGCCACCA CAGGGAGACGGGCAAAGAGGGCACTGAAAAGGGAAGCTGCTGATAAGGCAGCAGAAGCAAAGCATCAGCAGCATTTAATT AGGTTGGGCAGGAAGTGATTCTATTTGATGTCACAAGCCGAGCCTTGAACTTTCCTTCCCTCAAGTTAATATATTTTCTT TTCTTTCTTTACATTTTTTTGTACATTTATGTGCTTTATGAAAGCATGTGGGGGAAGATGTTTTAGAATAATGGCTTGGT ATAGGTGGTTAGAGTTCCTTGGGTGTATGGTTGATGGAGTTCCTAACTCGTTGAACAATTTAGGTTTCAATTAGTTATCA ATGCAGCTCTAAGTTGTGCATAATCAATAATGATCTTGACACCTCAATGCTTCGATGCCTTTTTTTCTTCCCTCTCTCTT TCTCTCGAAATTAAGAAATTTCAAATACTCAATGGAAAAAGGAAATCTCAGTTGTGGGGATAGCAAGAAAGAAAGTTGGG ATGAAACTTAAAAATGTTGGACTCTATTAAGTGTCTCATTTTCTGTTTCAAACTAAAAGTATGACATGTTAAAATCAGAC AAAACATGTTTTTAATATGTATTTATATCACATTCACCAAGATTAAATAATCGTCCGATCTGAATCCAATG
CDS sequence (LotjaGi6g1v0180600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTTCATCACTCGTGCAGATCCAAGACGAGGAGCAGGTCGTCCTCACCCACGATTTTCATGATCTTTCCATCGAAGA TCATCTGGTTGAAAAGGGGAGTGATGAAGAGACTCACAAAGGGGGATTTGGAAACCATGGGGGAATATGTGCTATTTGCT TGGATAAGATAGTGCTGCAGGAGACTGCTCTTGTTAAAGGTTGCGAGCATGCTTACTGTGTAACGTGCATCCTTCGCTGG GCCACATACAACAATAAAGTTACGTGCCCTCAGTGCAAAAATCCATTTGAGTTCCTCAATGTCCATCGCTCACTTGATGG CAGCATTGAGGATTACATGTTTGAGGAAAGTGTTTGCCTACTCCTTCGGGCCAAATGGTTCAAACCTTTAACTGTCGAGG ACCATGTGGTGGTTCATGAAGATACTTTATTAGATGAACTTGAAGATTATTATTATCATTATGAGGAGGATGACGAAGAT CTAGATGATGCTTACTATGGTGGCTCGTCAAGTTTCCGCATTGGCAACCGTAGATGGGGAGACAATGGTTATGTAAGAGC TGGGCGTCAAGAAGCTCGGCCAGTCCATAGATCAAACACTGATAATTCAGGAGCAAGTTCGGGAGCAAGTTCATCCCGCC AGCCAAAGAAGAAAGAGGCTGCAAAAAGTGCTGCCACCACAGGGAGACGGGCAAAGAGGGCACTGAAAAGGGAAGCTGCT GATAAGGCAGCAGAAGCAAAGCATCAGCAGCATTTAATTAGGTTGGGCAGGAAGTGA
Protein sequence (LotjaGi6g1v0180600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSSLVQIQDEEQVVLTHDFHDLSIEDHLVEKGSDEETHKGGFGNHGGICAICLDKIVLQETALVKGCEHAYCVTCILRW ATYNNKVTCPQCKNPFEFLNVHRSLDGSIEDYMFEESVCLLLRAKWFKPLTVEDHVVVHEDTLLDELEDYYYHYEEDDED LDDAYYGGSSSFRIGNRRWGDNGYVRAGRQEARPVHRSNTDNSGASSGASSSRQPKKKEAAKSAATTGRRAKRALKREAA DKAAEAKHQQHLIRLGRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 258 | 245 | 2.9E-112 | – | |
| Gene3D | 47 | 109 | 63 | 1.7E-11 | ||
| SUPERFAMILY | 49 | 99 | 51 | 2.55E-15 | – | |
| ProSiteProfiles | 50 | 93 | 44 | 12.563 | ||
| Pfam | 50 | 93 | 44 | 3.9E-9 | ||
| SMART | 50 | 92 | 43 | 3.8E-6 | ||
| ProSitePatterns | 68 | 77 | 10 | - | ||
| MobiDBLite | 189 | 258 | 70 | - | – | |
| MobiDBLite | 197 | 214 | 18 | - | – | |
| MobiDBLite | 215 | 251 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0180600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…