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LotjaGi6g1v0181400.1

Overview

Field Value
Gene ID LotjaGi6g1v0181400
Transcript ID LotjaGi6g1v0181400.1
Lotus japonicus genome version Gifu v1.2
Description Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT1G74780.1 Nodulin-like / Major Facilitator Superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|I1JWZ9|I1JWZ9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0181400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:47348091..47355979) extracted from Lotus japonicus Gifu genome v1.2.

CTAGTATTTAGCCCGTTTACCCGTGCGATGCACGGGGAATTTTCGTTTGAATTAACTACTAATTATTATGATTGAGTTTA GATGAATATTGATATATCTGGAATACTGCAATGATGTAGTTACTGATTGTAATTATTTTGATATTTTCTATCGATGTTTA TACATGTCACCTTCCGTGTGGAGATTATATGGACAGTTTTCAAATTTGTAATAGCTACACCCTCTATATGAATGATATTA TGCACAATATTGGATGTACATGGCAAGTAAAGTCACAAATAAATATAATATATGAAATAAAAGTTATTGGGCCAATTAGG TATGACCGGTAGGAGATTGTTTTTGGATAGAGATTGCAGAATTTACATTAGGCCAAAAAACAAAAAGGCCATCAAAGTAA TGAAATGGATACAATTAATTTTTAATCTTCAGGAGTGTTCAACAATGGGCAGTTTTGCTTTCTTGGAGGCATGGGCCGGT TTGGCTCGAGTGCCCTTGAGCTCCTTTTAATGACAATGAGACTTTGACCAAAAGAAAAAAAATAAAAAACCTCGAACGGT AGGAAGAGACTAATTAATACGCATAAAAGAAAGGAAAGATTTTGTAACATCATAAGACTCAATCTTTTAATGTAATTAAT GTGGTGCAGAGACATGATTCATGCTCATAGGAACTAATCATTGAGAGTACACTCACTTTAGTGGAGTCAAATAAACTAAA GACATAAACAAATTTCTAAGACACTTATAGCATAAGAATGACATAACCAAATTTACCTCATTATCATAAAAGGATATCAA TGACATCAAAACCTTGTGTTTGCACTCAAAGCCCTTGGTAAAAATGAAATTGGTCAATTAACATTAAAAGAAATTAGTAA TGTCTTAAATTCAATTAAAAGTTTGAACTTCAGTATTTTTTTTTGAAATAACTTGAGTATCTTAAATCTTATCTTACTAT TAAGGTACCGCATTGCATAACCTCTCTTTATTATAAAGCAATGCAAATGCAAAATTTTCAGTGTTTTTCTTATAAAATAA AACCTTGTTAATAAAATAAGATGTATAAAAAGAAGAGGAAAACAAAATCCATCAAATGGAGAAAAATATATTAAAGAAAG AAACTAAACACTCATAAAAAAGTAGCATAATATCTTTTTAATTCAAATTTGTGATGCTCTAATCACCCAAGGTACATGTG GCGGGTAGACTGCGACAATCAGATTAAATTTATATCATAATTACATATTCTTTTAGAAATAGCAGACTATAGTGACACAA ATAAGATATTAAGTGTACATCAAAGTCTCTTAATCCAAGCAAACTCTGATTATTTACATTAGATGATCTAGTAAAAGCTA AACGGTCATCAATTACCATCAATTTGCTGTGAACATTGACTATTAGATTTGAGAGATCTAAACTAAAATTTCTATAACCA TTTCAAGATCACTTAATAGCATGATAAAATAAGATGAGATACTGGCTTAAGCCATATGACTGCATCTCTTGAAGCCATAT GACCATGCATGTAAAGACTACTATGAGATCTTAGACCATAGAAAGAATTATATCATTTGTCTTGGAACCAAGAATAGCTC CAAGATTGTGCAATATGAAGTGTTTGGCTCTAAAAAAATTTCTATGTAGCAAATGTGTTAATCCCCCCACAGTTATAGAA CCACCTTCACGCCTTTTTATTATTCACTTTCACACGATGTTATCATCACCACAATAAAAGATTTAGGTACACAAAAAATA GGAGCAGATTCATCAGGGACTATCCTTGTCCTGTCATTGAAGAGTATCTTGAATTCATGTGAGGTTGGCCAACCCCACTC CACCATTGGTCACCAAGACAAAATAGATAATTTTATAGACCTTTCCCTAAGCAATTTCACCCCGGTACTTCCTGATCATT GATTTCCGAATGATTGCTTCAATCTTCAATTTTTTGGCCCTGAACCAACAAATAACGAATTGCATAAATAAATAATACCA AAAGCTCAAATGAACAATTTTTCAGCAAATCAACAGAAAAATGAAGAACAGACTCCTAATGGAGTTAACTGCCCAAAATT CTCCACCATCAGATGAATATGGAGAAATTAGGAGAAAATCAATGAAGAGAAAGATGAGGTACAGAACTCAAACCCAAAGC CAATCAAAGGCAGATTTGGGGATGCCATTCGAAATAGAAATCAACCACCTAGGTATTTATTAAAAATGAGGTAGATAGAT TTTGAAACCTTAGCGAATATTTCAAATAAACCTAAGACAAATTTGGGATATCCATTTCTTCAACAGGTCGGTGGTCTTTA GCAATGAAATTTCGTAGACTGGACCATTTAGGGTCCGAAAAGCCCGATCCAATCTGAAAGGGCTGGAGGGGGGGGGGGGG GGAACTCGCACCATAATAGTGCAATATAATGTAAATGAGAACTTGGTCTTAAGTGTATGGTGGACAGTGGAAAACAGTGC AAATGGGAACTTGGCATTTGGGACTTGTAGATAGTGTAATTTCAATATGGTTAAACTTAAATCTATCCATCATTATTCCA AAGATGGAGATCTAGAAGAAACACCAAGTGAATGACATATTTATAAAGTCTAGAAAATAACAACAATTTGAATTTGTAAA CAAAACTAAACAACTCAATGGTTCAAGGAAAATCTGGTGGTAGCAGTACCCTTCTTTTGCTACATGTTCATATTACATAT TAGATTCACATATCCTTTAGGCAATGCACCGATCATAACTTTAGGCAATATCTATAATCTATAATGAAAAGTGAGCTTCT TACCATCAAAATTGAAATCATATTTTGTGTGACCAGAATCTGAAAAGCAAGTACTTGAGCCAACCATGACTATTGGTGGC AATATTTGATAATTGGTACTCAAGCTCGACACTAATCAGTTCTAAAATTCAAAACTAAGCAACATTATCCCCCATTCCCG GTATGCTAAGGTTTACAAAAAAAATTGAATTGATTGTGCAATATTGTCAACACTCAATGAACGATGAATTAATATTAAAA GGGTTAGCAATCTTACTTTATAGAAGAAATATGTTGCAATCAATCCAGTTTGTGCATTGTCAAGTACAGTGTATGTACTG CTGAGTAGTGCTCCTTGCAATGCCTGCAATATGAAATATAAGATATATTCGTAATGCGATTAGTGTTGGATAAAATGGAG CATAAATAGACATTTACTCATACAGTTTCATATGGCTATATAAAGAAGTAAGTTTCACCATTTTATCATGTATTTTTTTT TATAAGACAAATTCATTAGATAGAAGTAAAAGGGCATTTCAATCTCAATACAAAGAAATAGAAAGGATACAAAGAGAAAG GTAAACTAAACATACATGCTAGCTAACTCCTAGCAAAGATAAAAAATCTTACAATGCTCTACCCTATCTCCCACCAGAAC AAATTAGACCAGTTCCAACCCAGCTTATGCAGATAGAACAATAGAAATTTTAGAGAAAGCCTTCTCCATATCTCACATAC ATAGCAATCAAGAAACCAAGTGGTCATTATTCACCTTGCCACCTTCCATAGTAGATTTCGTGACCAGAGTAATGCAAGAA GGCCCTTTATCCACCTACTATTTCACACAGTATCTTCTCAGCAGAGGAATTGAATAAAACTAATGCAACACTTTTATCAT GTATACATTATATAATGAGAACCGGTTTTCACCTAATGAACTCATGTATAATAATGGATAATTGGAAATTATATGCATAG TTTGTCACATAAAAGAAATAGTATTACAAAGTGATTATTGTGTATGTACAAATAAAGAGACTAATATACTTCTATCAATG ACAAAGAACAAACTATTTATTTTAGTGGCAACATAACTTAAGGCATCCAATCCAAACTGGGCTTTAATTTTTATCCCTTT TCTTTTTTACCCCAAGTAAGTCTTCTTCATACCTCTCAAAAACATACAAAAAAGTGAATACAGCTTACAGATACAATGAA AACATCTAAATAAGTATGAAATTTCAAGAAGTAATATTATTTAGTAGTGGCCCAAACCTAGCCAATTGCATATGACTCTC CATAAATCTCTTTCAGGAATGAGATTTCTGATAGAATTAATAGCAACAACCATCTCAAAAAACTCAGAAATAACAGATGC AACTGGAAGGGGATGTGAATTGTGGTGAAGTGAGGGTTGTGTGAACATTTATAGGCAAATGGATTTGAAGAAACATGCAA AGGAGAAGGTTCTCTAAACCCATACCCACTATAACTCTCCAGCTACAAACCTAACCCAACTTCAAATCAGATTGGAGTGA CAGATGCATAAAAAATCAAGGAACTGAAAATACAGCCCAAACCAAGTACCAAAGGCACATCTAGTAAAAAATATCACATA AAAAATTCAAACAAAGGACAAAATTAGAACAAAACGTAAATCAATTGCAAAGCTACAGTAGGTTCACATTTCACTGATTA CAAAGACTTACCCAAGTATTGTTGACGGTGGGAAGTGATGGCTGACGTCGGAGAAGCCATGGAAAGGGGCCAAAGATCGC GAAGAGTAGATTTTGTGAACCGCCAAACGTAACCACAGCTGGAGCGGGTGAAATCTATCACAATCATACCGCTGGCCTAG CACAAAATCGGGGAAAAGGACGGATTTTCTAGAGGTAGAGTGGCGGAAGGGAAAGTGGGTTGGTACTTACCCATTTTTCC CGGAGAGGATGGAGGCGGTTCTGCTACAACACGTGATTGAGACTTCAGAGGGGAGGAAAACTGGTTGGGTACTTACCCAT CAGATATGGTTGCTAGCTAGGGTAAAAAAAAAAACTAAAGAAAAGAAAGCCAGATGGCAGAACCTGATTGGAGGTCTTTT AGGAATAGTAACTTGAGAATGAGAAGTAGTAGATTTATCATTTCCACGATCACCATGCGTACCATTATTAATCGTCTATG TTAATTATTATAACTAAACCAACACACTGTTAGTTTTGTATTCGAAGTTCTAACATGTGATTGCCATGGCTAAATATTTT AAGGGTGGAATCACGTTCTCTCCAATGACTTTTAGGTTTATTTAATGGACTCACCATCACGACCAACCAATTCAGATGAC CAGGAATTGAACCATTCAAAGCCATCCAATCCATAGCCGGAGGAGGGTATGGAGTGGGTGGCGAACCGTTGGACCGGCGT GGCGGCGGCGATATGGATCCAGTGGAGCTGCGGTGCATCCTACACCTTCAGCATCTACTCTCACGTCCTCAAGTCCTCCC AGGGCTACGACCAATCCACCCTCGACACCGTTTCCGTCTTCAAAGACATCGGCGCCAACTTCGGCGTCCTCGCCGGCCTC CTCTACTCCGCCGTCACACCATACTCCGACTGTCACCGTGATTCCAAGTCCAGATGGAGCTCCTTTGCCGGACCCTGGGT TGTGGTCGCCGCCGGAGCTGTCCAGTGCTGTGCTGGTTTCTTATTCATCTGGGCTTCCGTCGTCGGGCTCATCGACCCGC CGCCGGTGCCCGTCATGTGCTTCTTCACCTGGCTCGCAGCTAATGGCCAGTGTTTCTTGAATACCACCAGCGTCGTCACC GGGTTGCGCAATTTCCCTCAATTTAGTGGCACCATCATCGGTATCATGAAGGTGCATGCAAGAATTTAATTTCATGAGTG GAATAAAATAAAATAAAATGATTCTATTTAATTTCATATGATATTTTAGTTAGTTTAAAAATCCTAATAAAAGTTTGGTA AAACCATTAATTCGGTAACTTTTTTTTTATTCTTCAAAGATAGCTTAAGTGGTAAGAGTAGCTAAGTTAGGAAAAGGTAG ATTTATGATTTACTTCTTTTTGTCCGATGTATAAAAAAATGTAACTTATAGCTTTTCTAATATTTTTTTTTAACTCATCT TTTCTAATACTTGAGAATTGAGATAGCTTGTAGATTCTTTTTTAAAGCTTCGTGATTTAATTAATTAAAATATTAATTTA TTATTTATTATCTTTTTAATGTAAATATATATATATGAAAAAGAAAAATAGTACTTTATTTTTATTATAAATTATTTGAA ATAAATCAAAACTTTTAAAGTGTTTAATTATTTTAAAATTAATATCTTACAAATATAATGTGTCATATAAGAATTTGAGT GTTCAACCTCTAGTTTAGTCAATTTTTTTTAATCAGCTAGCTTATGGTTTTTAATTTGCTTTACACCTTTTAGCGAACTT ATTAGTTGGACGTGTCAAACATATATAGCCACAATATCAAAATAAAAGTTGTTGTCTAGAGGTCTCAAAAATTGTTTGGG GACACCTGACATTAGTGAAAATTTGACGTTAGCTCGTACTTTTTAAGGTAAAAAGTGAAAGAATTTTTTTTATAATTAAA GTAACCTTTTGAATTGAAGTGGATCGAAGTGAAACTGTGCGCTAAACTGGAATTCAAACACATCCAGCCTTGTAAAACTA GTAAAACTATAATCTTGTTCTTTCTTGATATGTTCAGGGCTTTCTTGGGCTCAGTGGAGCTATCCTGATTCAGCTGTATC ACACATTTTGTGATGGGGATCCCACCACCTACATTTTGTTGCTTGCTTGCCTACCTGCGTTCGTCTCAGTGCTGCTGATG TTTCTGTTGAGGATCTATGAAGCTCACGTGGGTGATTACAAGAAGCATTTGGACAGCTTCTCCTTGGTCACTGTGATTAT TGTTGCCTATCTCATGTTCATGATCATCTTGCAGAACTTCGTGACATTACCATATTCCACGCGGATGTTCATGTTTGTGT TACTTGTTGTTCTACTAGCCTCACCTTTCGGCATCGCTGTCAAAGCCCAGTGGGAGGAGTCACAGGAATTCGAGGCTTCA ACGGAGTATCAACAACTGCCTAGTGTTGATCAGGGGGAAGTACCGGTGAATTTGGATGATGCCATGCCATTTGAAGAAGA AAAGAATCTCTTGCAAGCAATGTGCACAGTTGAGTTCTGGATGTTGTTTGCAACCATGATATCTGGGTTAGGTTCTGGGC TTGCAGCTATAAATAATATGAGCCAAATTGGAGAATCTCTTGGATATAGTACTATTGAGATTAATAATTTGGTGTCACTT TGGAGCATGTGGAATTTCCTTGGCAGATTTGGAGGTGGACATGTATCAGATTATATCATGCACAAAAGAGGTTGGCCTAG GCCTCTATTGATGGTTGTAACTCTAGGGGTGATGATAATTGGCCATTTAGTTATAGGTTCTGGTTTCCGTGGGAATTTGT ATTTGGGTCCTGTTCTTATTGGCATCAGCTATGGTGCACATTGGTCCTTAATGCCTACAATCACTTCTGAGATTTTTGGT GTGAAGCACATGGGTACCATTTTCAACACTATTGCTGCAGCAAGCCCAATTGGATCTTATATACTTTCTGTGAGAGTTGT TGGATATATTTATGACAAGGAAACCATTGAAGAAGATAACTCATGCTTTGGCATCCACTGTTTCATGTTGTCCTTTTTTA TTCTGGCTGGTGTGGCTTTTCTCTCATTTTTGGCTGGTCTGGCATTGTACTTCCGGACCCAAAAGTTTTATAAGCTAGTT GTTCTTAGAAGATTAAAACATTATGCACATTGATGAATGATTTGTTTAGCAGTATTTGGATGAAGAAACCTTGATCTTGT TTTCTTTGTTCTGATTGGCACAAATATAATTACTCTAATGATGTAATCTTCTAAAGGTCTATTTGGACGATTCAATTTGT GAATGTTACTTCTTGTGTGTGCAGACAAGTGACAAAACAATTGCTTCTCATATTAGTACGCGCCTTATGTTTACTCTTTA GGCACAAATACAATTTATTGACTTTTAGTGGCTTGTTTTCAGATTGTCG 

CDS sequence (LotjaGi6g1v0181400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGTGGGTGGCGAACCGTTGGACCGGCGTGGCGGCGGCGATATGGATCCAGTGGAGCTGCGGTGCATCCTACACCTT CAGCATCTACTCTCACGTCCTCAAGTCCTCCCAGGGCTACGACCAATCCACCCTCGACACCGTTTCCGTCTTCAAAGACA TCGGCGCCAACTTCGGCGTCCTCGCCGGCCTCCTCTACTCCGCCGTCACACCATACTCCGACTGTCACCGTGATTCCAAG TCCAGATGGAGCTCCTTTGCCGGACCCTGGGTTGTGGTCGCCGCCGGAGCTGTCCAGTGCTGTGCTGGTTTCTTATTCAT CTGGGCTTCCGTCGTCGGGCTCATCGACCCGCCGCCGGTGCCCGTCATGTGCTTCTTCACCTGGCTCGCAGCTAATGGCC AGTGTTTCTTGAATACCACCAGCGTCGTCACCGGGTTGCGCAATTTCCCTCAATTTAGTGGCACCATCATCGGTATCATG AAGGGCTTTCTTGGGCTCAGTGGAGCTATCCTGATTCAGCTGTATCACACATTTTGTGATGGGGATCCCACCACCTACAT TTTGTTGCTTGCTTGCCTACCTGCGTTCGTCTCAGTGCTGCTGATGTTTCTGTTGAGGATCTATGAAGCTCACGTGGGTG ATTACAAGAAGCATTTGGACAGCTTCTCCTTGGTCACTGTGATTATTGTTGCCTATCTCATGTTCATGATCATCTTGCAG AACTTCGTGACATTACCATATTCCACGCGGATGTTCATGTTTGTGTTACTTGTTGTTCTACTAGCCTCACCTTTCGGCAT CGCTGTCAAAGCCCAGTGGGAGGAGTCACAGGAATTCGAGGCTTCAACGGAGTATCAACAACTGCCTAGTGTTGATCAGG GGGAAGTACCGGTGAATTTGGATGATGCCATGCCATTTGAAGAAGAAAAGAATCTCTTGCAAGCAATGTGCACAGTTGAG TTCTGGATGTTGTTTGCAACCATGATATCTGGGTTAGGTTCTGGGCTTGCAGCTATAAATAATATGAGCCAAATTGGAGA ATCTCTTGGATATAGTACTATTGAGATTAATAATTTGGTGTCACTTTGGAGCATGTGGAATTTCCTTGGCAGATTTGGAG GTGGACATGTATCAGATTATATCATGCACAAAAGAGGTTGGCCTAGGCCTCTATTGATGGTTGTAACTCTAGGGGTGATG ATAATTGGCCATTTAGTTATAGGTTCTGGTTTCCGTGGGAATTTGTATTTGGGTCCTGTTCTTATTGGCATCAGCTATGG TGCACATTGGTCCTTAATGCCTACAATCACTTCTGAGATTTTTGGTGTGAAGCACATGGGTACCATTTTCAACACTATTG CTGCAGCAAGCCCAATTGGATCTTATATACTTTCTGTGAGAGTTGTTGGATATATTTATGACAAGGAAACCATTGAAGAA GATAACTCATGCTTTGGCATCCACTGTTTCATGTTGTCCTTTTTTATTCTGGCTGGTGTGGCTTTTCTCTCATTTTTGGC TGGTCTGGCATTGTACTTCCGGACCCAAAAGTTTTATAAGCTAGTTGTTCTTAGAAGATTAAAACATTATGCACATTGA 

Protein sequence (LotjaGi6g1v0181400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEWVANRWTGVAAAIWIQWSCGASYTFSIYSHVLKSSQGYDQSTLDTVSVFKDIGANFGVLAGLLYSAVTPYSDCHRDSK SRWSSFAGPWVVVAAGAVQCCAGFLFIWASVVGLIDPPPVPVMCFFTWLAANGQCFLNTTSVVTGLRNFPQFSGTIIGIM KGFLGLSGAILIQLYHTFCDGDPTTYILLLACLPAFVSVLLMFLLRIYEAHVGDYKKHLDSFSLVTVIIVAYLMFMIILQ NFVTLPYSTRMFMFVLLVVLLASPFGIAVKAQWEESQEFEASTEYQQLPSVDQGEVPVNLDDAMPFEEEKNLLQAMCTVE FWMLFATMISGLGSGLAAINNMSQIGESLGYSTIEINNLVSLWSMWNFLGRFGGGHVSDYIMHKRGWPRPLLMVVTLGVM IIGHLVIGSGFRGNLYLGPVLIGISYGAHWSLMPTITSEIFGVKHMGTIFNTIAAASPIGSYILSVRVVGYIYDKETIEE DNSCFGIHCFMLSFFILAGVAFLSFLAGLALYFRTQKFYKLVVLRRLKHYAH 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 85 85 -
PANTHER 5 527 523 1.1E-252
PANTHER 5 527 523 1.1E-252
SUPERFAMILY 5 207 203 4.58E-6
CDD 7 503 497 8.37876E-107
Pfam 7 69 63 8.5E-20
TMHMM 12 34 23 -
TMHMM 54 73 20 -
TMHMM 86 108 23 -
Phobius 86 108 23 -
Pfam 87 268 182 4.0E-40
Phobius 109 119 11 -
Phobius 120 140 21 -
Phobius 141 151 11 -
Phobius 152 174 23 -
TMHMM 152 174 23 -
Phobius 175 185 11 -
TMHMM 186 208 23 -
Phobius 186 207 22 -
Phobius 208 218 11 -
Phobius 219 239 21 -
TMHMM 223 245 23 -
SUPERFAMILY 230 517 288 4.58E-19
Phobius 240 250 11 -
Phobius 251 269 19 -
TMHMM 252 269 18 -
Phobius 270 320 51 -
Gene3D 315 518 204 1.0E-12
ProSiteProfiles 319 532 214 9.634
TMHMM 321 343 23 -
Phobius 321 339 19 -
Pfam 324 517 194 3.2E-10
Phobius 340 350 11 -
Phobius 351 369 19 -
Phobius 370 389 20 -
Phobius 390 411 22 -
TMHMM 391 410 20 -
Phobius 412 416 5 -
Phobius 417 437 21 -
TMHMM 420 442 23 -
Phobius 438 448 11 -
TMHMM 449 471 23 -
Phobius 449 473 25 -
Phobius 474 484 11 -
Phobius 485 513 29 -
TMHMM 491 513 23 -
Phobius 514 532 19 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Transmembrane transporter activity Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0181400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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