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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0181700 |
| Transcript ID | LotjaGi6g1v0181700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G65820.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820; TrEMBL-Plants: tr|A0A072TSC5|A0A072TSC5_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi6g1v0181700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:47405431..47408639) extracted from Lotus japonicus Gifu genome v1.2.
TTTTAACTGAATTATGTACCCAAAATTTTTTTAACTAAATTATGATTTTCTGCTCATTCTGCACTAATGCTAATTTCTAT CACAAAGTCCTAGAGGTGAAGAAGCATTAGGTTTGAAAATCAAGCACATCTACGTCGCCGCCGCCGCCACCGGCCGCCGC CGCACCTCCTCCTAGCTCCGAAGAGGTCAGCTTCTACTTAACTTTCCTAGGGTTGCTGAAAAAAATGAAGCAACATAAAC TTCACTGTTATTAGATTTTGATCCTGATCATACACAGAAAATGCAGAGATTCTCAGCAAAATCAATACTATTCTTCTATA GAAATGGCGTTTTCACCCGTCCCTTGAGAAAACCATTGCTGATTGCACATGAAAATACTGTGTCTAAGCTCTTCTCTACC AGCTTTGAAGTTAGTTCTTCACAGTCACCACCACCAAATCAAAATTCCTCAAAATTTGATAGTAGCAGTGTCAATTCTAG CTCAACAAGCCACTTTGGCCTTGTTCGCCTCGAATCTAGTTCAGGAAATGATATAAATGACCAAAGCTATGATGAGTTTG CTTCTGATGTGGAAAAGGTTTATAGAATATTGAGAAAATTTCATTCTAGGGTTCCCAAATTGGAGCTAGCTTTGAAAGAA TCCGGGGTTGTTGTGAGGTCGGGGTTAACGGAGCGTGTATTGAATCGGTGTGGGGATGCTGGGAATTTGGCGTATAGATT CTTTGCGTGGGCTTCGAAGCAATCAGGTTATCAGCATAGTCAGGAGGTGTACAAGGCTATGATTAAGGTTTTGGGGAAAA TGCGGCAATTTGGTGCGGTTTGGGCGCTGATTGATGAAATGAGGCAAGAGAATCCTCAGTTGATTTCGCCCCAAGTGTTT GTTATTTTGATGCGGAAGTTTGCTTCTGCGAGGATGGTTCAGAAGGCTATTGAAGTATTGGATGAAATGCCCAAGTATGG GTGTGAGCCGGATGAATATGTCTTTGGGTGTCTGTTGGATGCATTGTGTAAGAATGGTAGCATTAAGGAAGCAGCTTCAC TCTTTGAGGATATGAAGTATCGATTTCCACCAACTGTCAAACATTTTACTTCCTTGTTGTATGGTTGGTGTAGGGAAGGG AAGCTTATGGAAGCAAAACATGTGTTGGTGCAGATGAAGGATGCAGGCATTGAACCAGATATTGTGGTTTATAACAATTT ACTTAGTGGGTATGCTCTAGCTGGAAAAATCGTGGATGCTTATGATCTTCTGAAAGAGATGGGAAGGAAAGGTTGTGAAC CAAATGCAACCTCGTACACAATTCTGATCCAGTCTCTCTGTAAACATGAAAAATTGGAGGAGGCAATGCGGATATTTGTT GAGATGCAGAGAAATGGTTGTCAGGTGGATGTTGTAACCTATACCACTTTGATTTGTGGGTTTTGCAAGTGGGGAAAAAT CAAAAGGGGTTATGAGCTTTTGGATCAGATGATACAAGAAGGCCATTCCCCAAATCAGCTGACTTATCAACATATCATGT TGGCCCATGAAAAGAAGGAAGAGCTGGAAGAGTGTATGGAACTGGTGAATGAGATGCAGAAGATTGGTTGCATTCCCGAT CTTAATGTCTACAATACTGTTATTAGGTTAGCTTGCAAGTTGGGAGAGGTCAAAGACGGTGTTCGGCTATGGAATGAAAT GGAAGCAAGTGGACTTAGTCCAGGCATTGACACCTTTGTCATCATGATTAATGGGTTTCTTGAGCAAGAGTGTCTAGTTG AAGCCTGTGAGTATTTCAAAGAGATGGTTGGGAGAGGGCTTTTTGCTACTCCTCAATATGGTACCCTAAAGGTGTTGATG AATTCCCTTTTAAGAGCTGAGAAGCTCGAAATGGCTAAAGATACTTGGAATTGTATCACAGCTTCTAAAGGGTGTGAGCT GAATGTGGGTGCATGGACAATCTGGATTCATGCCCTCTTTTCAAAAGGACATGTGAAGGAGGCTTGTTCATTCTGTATAG ACATGATGGAGAAGGATTTAATGCCACAGCCAGATACTTTCGCAAAGCTTATGCGTGGTCTGAAGAAACTGTATAACAGA GCATTTGCAGCAGAGATCACAGAGAAGGTAAGGAAAATGGCCGCTGACAGGCAGATCACATTCAAGATGTATAAACGGAG AGGAGAGAGGGACTTGAAAGAAAAGGAGAAGGAGAAAAAAGATGGGAGAAAAAGGAGGGCTAGACAACGCCGCTGGGGTG GAGGCAATCAGAAAGCATTATAATTTGCATAGTAGATATTCTGATTTCTGGCAAGAAGGTTATCAAGCTATTCAATTAAT TGGAAATTAAATGATGCGATTGGTTTCAACTCATCGAGACATGAGTGGAAGACTTCAGAAAAGCTTTTTTTTTTCTTTCA GGTACGTACTTGTTCAAAATAGTTCATGCTTTCTAAGTTTCTCTTCATTTTAGGTTAGAATTGGAAAATAGAAGTCTTTT CTATTTCAGATTATAGGCCAATTTTGAAACTAATTATAGTGGTAGATAATGTAATGAGATTTTTACATTGTAAGCACTTG TTTTGCATTTTTTTTTAATCTATGAAAATTGATGTCTTCAGCACTGAAATTGTATTTTCAGTTTTATACAGATATACTAA AGAATGACTAAGTATTGAACGAGCATGCTTTTCTTCTGCACATCGATATGATGTGCCTTACAATCTGTTGGATGAAACCT CTACTCTACTCACTAGATGAAAACTAAAAGAGCTTGCCAGGGAGGGATCCAAGACATATTCCTGTTTGTTCTTTGCTGTG GTATAAAATTTTCAGGTCTTGACTAAAGTATAGGCAGAAAGATCCAAATGTGGTGATTCGTTATGTTTACTTCATGAATC ATGATCAATATTGTGTCAACAGATCTTTTTGTTATTATTAAAATTTAGTCTGTTACTCACTTTGCTGTCTAATGAAGTTT TTATAAAATGTGCCAACAGTTTTGAACAAATTTTCGGCCCAGGTATCATAATGGTCCCAAATGGTTTATAAAGACGGTTT CAAGCCATTGCATAAGCATCAAAGAGTCGGTGAACACTTGCAATATATGCTTCCTATACTGGATGTTTTTCAGATAGTTT ATGTCTTCAAATTAAGGCAATGTTCGGTGGATGCAAAGGACAATAACTTATGCCACTGAGAATGATTAATGATAAGGGGT TTGAGTAGT
CDS sequence (LotjaGi6g1v0181700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAGATTCTCAGCAAAATCAATACTATTCTTCTATAGAAATGGCGTTTTCACCCGTCCCTTGAGAAAACCATTGCT GATTGCACATGAAAATACTGTGTCTAAGCTCTTCTCTACCAGCTTTGAAGTTAGTTCTTCACAGTCACCACCACCAAATC AAAATTCCTCAAAATTTGATAGTAGCAGTGTCAATTCTAGCTCAACAAGCCACTTTGGCCTTGTTCGCCTCGAATCTAGT TCAGGAAATGATATAAATGACCAAAGCTATGATGAGTTTGCTTCTGATGTGGAAAAGGTTTATAGAATATTGAGAAAATT TCATTCTAGGGTTCCCAAATTGGAGCTAGCTTTGAAAGAATCCGGGGTTGTTGTGAGGTCGGGGTTAACGGAGCGTGTAT TGAATCGGTGTGGGGATGCTGGGAATTTGGCGTATAGATTCTTTGCGTGGGCTTCGAAGCAATCAGGTTATCAGCATAGT CAGGAGGTGTACAAGGCTATGATTAAGGTTTTGGGGAAAATGCGGCAATTTGGTGCGGTTTGGGCGCTGATTGATGAAAT GAGGCAAGAGAATCCTCAGTTGATTTCGCCCCAAGTGTTTGTTATTTTGATGCGGAAGTTTGCTTCTGCGAGGATGGTTC AGAAGGCTATTGAAGTATTGGATGAAATGCCCAAGTATGGGTGTGAGCCGGATGAATATGTCTTTGGGTGTCTGTTGGAT GCATTGTGTAAGAATGGTAGCATTAAGGAAGCAGCTTCACTCTTTGAGGATATGAAGTATCGATTTCCACCAACTGTCAA ACATTTTACTTCCTTGTTGTATGGTTGGTGTAGGGAAGGGAAGCTTATGGAAGCAAAACATGTGTTGGTGCAGATGAAGG ATGCAGGCATTGAACCAGATATTGTGGTTTATAACAATTTACTTAGTGGGTATGCTCTAGCTGGAAAAATCGTGGATGCT TATGATCTTCTGAAAGAGATGGGAAGGAAAGGTTGTGAACCAAATGCAACCTCGTACACAATTCTGATCCAGTCTCTCTG TAAACATGAAAAATTGGAGGAGGCAATGCGGATATTTGTTGAGATGCAGAGAAATGGTTGTCAGGTGGATGTTGTAACCT ATACCACTTTGATTTGTGGGTTTTGCAAGTGGGGAAAAATCAAAAGGGGTTATGAGCTTTTGGATCAGATGATACAAGAA GGCCATTCCCCAAATCAGCTGACTTATCAACATATCATGTTGGCCCATGAAAAGAAGGAAGAGCTGGAAGAGTGTATGGA ACTGGTGAATGAGATGCAGAAGATTGGTTGCATTCCCGATCTTAATGTCTACAATACTGTTATTAGGTTAGCTTGCAAGT TGGGAGAGGTCAAAGACGGTGTTCGGCTATGGAATGAAATGGAAGCAAGTGGACTTAGTCCAGGCATTGACACCTTTGTC ATCATGATTAATGGGTTTCTTGAGCAAGAGTGTCTAGTTGAAGCCTGTGAGTATTTCAAAGAGATGGTTGGGAGAGGGCT TTTTGCTACTCCTCAATATGGTACCCTAAAGGTGTTGATGAATTCCCTTTTAAGAGCTGAGAAGCTCGAAATGGCTAAAG ATACTTGGAATTGTATCACAGCTTCTAAAGGGTGTGAGCTGAATGTGGGTGCATGGACAATCTGGATTCATGCCCTCTTT TCAAAAGGACATGTGAAGGAGGCTTGTTCATTCTGTATAGACATGATGGAGAAGGATTTAATGCCACAGCCAGATACTTT CGCAAAGCTTATGCGTGGTCTGAAGAAACTGTATAACAGAGCATTTGCAGCAGAGATCACAGAGAAGGTAAGGAAAATGG CCGCTGACAGGCAGATCACATTCAAGATGTATAAACGGAGAGGAGAGAGGGACTTGAAAGAAAAGGAGAAGGAGAAAAAA GATGGGAGAAAAAGGAGGGCTAGACAACGCCGCTGGGGTGGAGGCAATCAGAAAGCATTATAA
Protein sequence (LotjaGi6g1v0181700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQRFSAKSILFFYRNGVFTRPLRKPLLIAHENTVSKLFSTSFEVSSSQSPPPNQNSSKFDSSSVNSSSTSHFGLVRLESS SGNDINDQSYDEFASDVEKVYRILRKFHSRVPKLELALKESGVVVRSGLTERVLNRCGDAGNLAYRFFAWASKQSGYQHS QEVYKAMIKVLGKMRQFGAVWALIDEMRQENPQLISPQVFVILMRKFASARMVQKAIEVLDEMPKYGCEPDEYVFGCLLD ALCKNGSIKEAASLFEDMKYRFPPTVKHFTSLLYGWCREGKLMEAKHVLVQMKDAGIEPDIVVYNNLLSGYALAGKIVDA YDLLKEMGRKGCEPNATSYTILIQSLCKHEKLEEAMRIFVEMQRNGCQVDVVTYTTLICGFCKWGKIKRGYELLDQMIQE GHSPNQLTYQHIMLAHEKKEELEECMELVNEMQKIGCIPDLNVYNTVIRLACKLGEVKDGVRLWNEMEASGLSPGIDTFV IMINGFLEQECLVEACEYFKEMVGRGLFATPQYGTLKVLMNSLLRAEKLEMAKDTWNCITASKGCELNVGAWTIWIHALF SKGHVKEACSFCIDMMEKDLMPQPDTFAKLMRGLKKLYNRAFAAEITEKVRKMAADRQITFKMYKRRGERDLKEKEKEKK DGRKRRARQRRWGGGNQKAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 41 | 458 | 418 | 2.2E-100 | – | |
| MobiDBLite | 45 | 64 | 20 | - | – | |
| Gene3D | 128 | 261 | 134 | 1.4E-27 | ||
| ProSiteProfiles | 160 | 194 | 35 | 7.903 | ||
| Pfam | 163 | 190 | 28 | 0.16 | ||
| ProSiteProfiles | 196 | 230 | 35 | 10.238 | ||
| TIGRFAM | 200 | 232 | 33 | 7.0E-7 | ||
| Pfam | 227 | 259 | 33 | 2.8E-9 | ||
| ProSiteProfiles | 231 | 261 | 31 | 9.931 | ||
| TIGRFAM | 233 | 259 | 27 | 1.9E-5 | ||
| Gene3D | 262 | 412 | 151 | 1.6E-44 | ||
| Pfam | 263 | 293 | 31 | 2.0E-5 | ||
| ProSiteProfiles | 265 | 299 | 35 | 10.983 | ||
| TIGRFAM | 269 | 301 | 33 | 2.9E-6 | ||
| Pfam | 296 | 327 | 32 | 1.1E-7 | ||
| ProSiteProfiles | 300 | 334 | 35 | 12.595 | ||
| TIGRFAM | 302 | 336 | 35 | 2.7E-8 | ||
| Pfam | 335 | 383 | 49 | 4.2E-17 | ||
| ProSiteProfiles | 335 | 369 | 35 | 12.529 | ||
| TIGRFAM | 338 | 371 | 34 | 1.4E-9 | ||
| ProSiteProfiles | 370 | 404 | 35 | 12.847 | ||
| TIGRFAM | 372 | 405 | 34 | 4.8E-10 | ||
| ProSiteProfiles | 405 | 439 | 35 | 9.262 | ||
| Pfam | 408 | 437 | 30 | 0.044 | ||
| Gene3D | 413 | 530 | 118 | 5.3E-23 | ||
| Coils | 415 | 435 | 21 | - | – | |
| PANTHER | 418 | 624 | 207 | 2.2E-100 | – | |
| Pfam | 439 | 486 | 48 | 3.8E-11 | ||
| ProSiteProfiles | 440 | 474 | 35 | 11.904 | ||
| TIGRFAM | 443 | 475 | 33 | 1.1E-7 | ||
| ProSiteProfiles | 475 | 509 | 35 | 8.21 | ||
| TIGRFAM | 478 | 507 | 30 | 1.0E-4 | ||
| ProSiteProfiles | 512 | 547 | 36 | 5.075 | ||
| Gene3D | 536 | 616 | 81 | 5.0E-6 | ||
| ProSiteProfiles | 548 | 582 | 35 | 8.616 | ||
| Pfam | 551 | 579 | 29 | 0.029 | ||
| Coils | 625 | 645 | 21 | - | – | |
| MobiDBLite | 630 | 660 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0181700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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