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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0183200 |
| Transcript ID | LotjaGi6g1v0183200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase; TAIR: AT4G32410.1 cellulose synthase 1; Swiss-Prot: sp|O48946|CESA1_ARATH Cellulose synthase A catalytic subunit 1 [UDP]-forming]; TrEMBL-Plants: tr|Q8GRY7|Q8GRY7_LOTJA BZIP with a Ring-finger motif; Found in the gene: LotjaGi6g1v0183200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:47600371..47606853) extracted from Lotus japonicus Gifu genome v1.2.
GAAGCACCAAACATGGCAGCGGGAACAACTGAAAAAGAGAGACAGAGACACACAGTTGAGCTGGCTAAGACTTCGCAGAG AGAAAATGGATCAGCATGGTGGAGTTGCAACTGGGTCGCATGAAAGAAACGAACTTGTTCGAGTTAGACACGGTTCTGAT CATGGGGTTTGTGATTCTCAGACAAGCTTTTGATTCAACATTTCAGTTCATAGGATTTTTAATGATGTTTTTTTTTCTGG GTCGGGGAGTTTTGTTCTTACAGTGTTTGTTTGACTCTAAAGTTTGGATCTTTTTGCTTGTAATGGTAATGGGTCATAGG AGTTTTGTTTGTTCTTCTTCTTTTCCTTGCTTTATACAACTAAACATTTTTGAAGTTTTATCCTTTGGTTTGAAAATGTT TACAGTGTCATTGATTTAGTTAGGATGGTTGGATGTTGATATCTCATGTTTGATCTCTTGCTTGTACATTCCATTTGACT GATGTTTTGCTATTCATGGTTTGATTGATGCTTTTCTATTGATGACTTGAATCTGAAGTTTCTCTTTGTTGGAGGGTGAT TGGGAGGGGATTTGATGCTTTCTCTTGTTAAAATTTGTAATTTGATGCATGGATTTCAAATCAAACTATTGGTGCTTGTT GAAAATTTAGAGGTTTGGAAGTGGGATAGGCTATGTAGGAGGCTTTGTTCAGGGATTTGGAACTGGGTAGATAGACCTGT TATTGTAGTTTGGAGTCTAGTAGCATTGATAAAAACTGCATAATTGCTGTAATCGATTGCCGGATCCTGATACATTTCAT CGCTAATTTTTATGACATTTTTTTAAGGATGAAATCTAATTTCTTTGCCATTCTAATTTGTGTGGATGGGGCATGTCTTT TTTACTTGTAATCTTTTAAGAAATTGATCTGGATAGGCTTACTTAATGCTTATATAATTCTTATGGTGTGTTTGGATGAA CTGCTTAATTGTGCTTTTATGTCAAACAGCATTTATAAACGCTTATTTGAGAATTTATTAGAATCTAAAAATTTATATGT CGGAATGAGCTCTTATTAAGAAGTTATTCTAAGAAGCTTATCAAAATAAGCTAAAAAAAGCTTGTTGGTAGGTCATAAGC TATTTTATAAGCTTAATGAAAAACTTCCTTTGGTGCTTATTCTTTAAGATAAGCTCTTCCAAATGCATCCTAATTCTAAC TTGTATTATTTTTTCGTGTTATGCAGTCCAAACCCGTAAAGAATTTGAATGGTCAAATCTGTCAAATATGTGGCGAAACT GTTGGCCTAACAGCCAACGGCGATATCTTCGTTGCTTGCCATGAGTGTGCTTTCCAACTTTGTCATCCTTGTTATGAATA CGAGAGAAATAATGTGAGCCCATACTGTCCCCAGTGCAAGACTAGATACGAAAGTCACAAAGGTTAGCTTGCGCATACAG GTTATTTTGGTTTCAGTCTGTTCCTCGTCAAAATTTGCAATGAACAAGATGAATTTGGTTTGCAGAGAGTTCTCAAATGG AGGGAGATGATGATGATGATGATGATGAAGATGATGTCGATGATCTAGAGAATGAGGTCAAGTATGGTCAAGGAAATAGA ATGAAGGCAAGGCTTCAATGGGAAGAAGATGCTGACCTCTCTTCATCTTCTGGACATGATTCTCAAATGCAAAATCCTCA TCTGACAAATGGGCAGCTGGTAATTTATTAAACTGGTTTTTACACTCTCAACTTGGATAAACTCGCAAGTGTACTGGCAA AAATGTGTGAACTTACTTATAGACTCAGGATTAGTTCAAATTGCTCAGACTTAGTAAAATTTGAACGAATTTGAGTGAAG TTTGAAAATTATGAAAACTTTGGTAATCTTTATCGACTTTTTCACTTTTAATGCTGTGATACTCATGTAATTCATGTAAT AATTTATGAACTTCATTCACAGCCTACTGGTAAATAATTCTCTGCTCATATTTGGTACTGCATTTTGCTTTAATATACTA ATATTAACTAACTTTCTTTTTATGGCCAGATGTCTGGTGAGAATCTATGTGCTACTACATCAGGTCCTATGGGTCAATCC AAAAAGGTTCAGTCACTTCCATATGTTGATCCAAAGCAACCAGGTATGGAGTTAACTTGAAGTGATGGTAGCAGATCACA TTTTATGGTTAGGGTAAATCCTAAAGTGAAAATATCTTTTTATTACCATTCCTCTAAGAGTTTTAAACCTATCAAAGAAT TTTAATTTTTTATTGAAATTTATTTAAAGATTAGTAAAGGAAATGCTCTTTCTTTATGAAAGCTACACTTTTCTTTTCTG ATGCATGATACTTATATATGAATTTAAACCAATTAAAATCAAATTATGAATGACCCAATTTGGTAGCTGATTGTCTAGCA TAGAATGCTCATGTGTTTAATTTTGGTGTCCATGTCTTGTGGAGTTTCGTAGTTTTCTTGTCCAGGATATCTCTGAGGCT GTGACCTCTAGGAGTGTTTCCTTTCTTTGGGACTTTGCCTCTCCATATCATGAAAAAAGATCGTTTTTCAATTTTTAAAC TCTAGACTTGAGAACTGATATCTTACTTTTTGTATTTCAAGTTTTCTTGTTATTTATGTTATATAGTATATGAGTTAGAC TTTTTTTAGTTTGAAATTTTTTCCCATAAAAATAAAAAATCAACATGAATTAAAAAAACCTATAAACTAGTGTTGGTTAG TAGAAATAATGATTAAGTCGCTAGCCTCACTATGATGTGGATGTTTGTCTTGAACAAGATTACTTCCTATTGATGATACA TGTGGTGCACCAAAAAAGGGATAATGAATAAGTCACTTGACACAATTAGTGTTGTGTTGACAGTATCAATTACTTGAATC AATGTATCCTTCCTGTTGTGTTGTATTCACATAAGTAAATAAAATATTTACTGGGATTTGAATTTTTAATGACTTTGGCA TAATCCAGGTCTTGAGAGTGATGAGGAGATCAGAAGAGTACCGGAGTTTGGAGGTGAGTCTGCTGCCACTTCAGCTTCTC GTCCTGACACTGGTTCAAATCCTGGTCCAGAGCGTGTTCAGGGAGCAGGGGAGGGTCAAAAGAAGAGAGGGAGAAGCTCA GCAGACAAAGAGAGCAAGCGGTTGAAGAGGTATGTATGTAAACTTGGTTCGTCTAGTATCAACTCTAAACCCTTTTTCCG GGGATTAATTCATTGCTTTTTGTAATTTGTTTCACTGAGTGGGTGTAAAAATGATAATTAGGCTACTGAGGAACAGAGTT TCAGCTCAGCAAGCAAGGGAGAGGAAAAAGGCATACTTGACTGATTTGGAAACAAAAGTCAAAGACTTAGAGACGAATAA TTCAGAGCTCAAAGAGAGACTTTCCACTTTGCAGAATGAGAATCAAATGCTAAGACAGGTATTTCAAATTTGCACATTTA ATCATTGTTAGGAATGTTATATAAAACCATTATTGTTTTCACCCAATAGCTTTAACTTTTGGTGCATAACAAAGTATCAG AGTCTCTATGCCAATTAACCAAGTGGTGTGGAGATTTAATCCTTTTTTGACACGATATATGTGGGTTTGTGTATTATTCA CACTTCAAGCCCACTTAGGCTATTGTGTGGAGTGTATTTAAAATATAATATAAAAAACATGGGTACGTTTCCATCTAATA GCTTAATAAGCTTTTGTGATAGTTAATTCATGACTATTACCATCCTATCATCGTCACGCTATCATGATATTATTGTTCTT TGAATGTATTGAGCTGATTTATCTTTGATGAAGTTAATACACCTAAACATTTTAAGATCGCATTGTCATTACATCTTATT TATTATTCACTTGATTACTCTAAACTATGATTTAGAAAGGGAAAAAAGGGCATTCATGTTATATTATCCATGATTTACAA CCATCAATATCAGTTTAGATAGGAATTATGTATAAGACAATTAATATACTTAAAAAGTGCTGGTTTGAGTGGAAGAGACT CAGGTCCTTTTATCATTTGGCTTTGGGTTTGATACTAAGACTCATGTGTATGAGAAAAAATGCTACTGGGAGGAGTCCCC GCCTCTAATGCTTGATTGTTAATCTTTCATCTACTACTACTAGGGTGGGAAATACTTGAGAAACCAAAATAATATGCATA TGGGAAGCCCGTTGATCAATTACTGATATTACCTAGTATTTTAAATCTTATTCTGTTTACTGGGCAAAGTATAACATAAA AGATGGGTGGTGAATATGCCCATACTTGTCTCTGAGCATCACACACCTCCAATTCCATATTATGTCAAATGGTTAATGTC AGTGTCAGTGGTTGATGATGAATATCGTAATGTGCTCTTGTCTGCATGTGTTGATGTTTATTTTTTTGTTGGCTTTTGAA ATTTTTGGATGGGTGCAATGAATATATACCATATGCTATTCTTTGGGGGTCTGGATGATATCTTAAACTTGAAATGGCAT TAGTTCGATTAAATAATCTCATGTCAAATGACCTGTGTTGCACGGGTACGGGTACGGTACCCGGTACGGGTACGGTATTG GGTACGCGGTACGCGATTTTTGAAAAAATAGGGGTACGGGTACGTTAGATATATGCATATTTTTTTAAATATAATATATA ATAAAATATACATAATATTTAAATATAAATAAATTATGCAAAAAAAAAGGCAAAATGTCGTCGTTTTGAGCAGGAAAAAA ATATATAAAGGCCAAAACGACGTCGTTTTGAGCCAGAAAAAAAAAAAGGGGGCAAAACGTCATTATTTTGAGCCCAGGAA CCTTTTTTTTTTTTTTTTGGAACGGGTAGGTACCGGGTACGTACCCACAGTGTACCGGGTACCGGGTACGTACCCGGTAC GGGTACGCGGCCAAAACAGCCGTACCCATGCAACAGAGCAAATGACACTATCCTGTGAAATTTCGTGTCTAAATGACTAT ATCTGTCAGCATAATTGTCAAAAAGTCTCACCTATTTAATAGGCATAAAAAAAGAGATAGACACGAAATTTCAACACTGA CTTCACGAGATGACTTCGATGTGACATCAGTTATACACCCTCCGGTCACATATATAAGCAAAAAACAACATTTTAGGTTC ATTCAATAAATGATGTATCTAGTAATGAATGTGTGTAAATTGAGCTTCTTTTTTTTGGGGATTGGTGATTTCCTTGGAAA GCTCTCAACTACACTTGTTTTGAAGTGAATGAAATAAATCTAAAATATGAGCTGTCAGCTTGATGTCTATGCTTGTAATT GTTCCTTATGTGCCCATACCAGACCACATTTGGTGGGACCCTGTATCTACTGTTCTCTAGCCTTATTGCCTTTGTTTATA TTTCATTGCTCTTTGCAGATATTGAAGAACACTACAGCAAGCAGGAGAGGGAGCAATGGTGGTACCAATAATGCTGAATG AACTTATCACAAAAATGGCAGAGGAAACTTAGAACTGGAGTAAATATGGAGAGAGTAAATTAAATTAGCAAAGAAAAAAA AAGAAGTTAATTAATTTTGATGATTTTTTGTAGGGGTGAATGTGGATATCATGAAGTAAAGGATGAACTATAAGACATGC TTTTATACTAAAATAGTGTGTTCTTATGTCAAATTTAATTGTTTATATACCCCTCCTTTTTTTTATGGCGATCTATCTTA CAATTCTAGAAGTATACCGAGGTTTACGGTATAATTTCACTATTGTTGGGATATTATTCGGTTAATGTTAGGTTTAATTG CACTTTTAATCCTGTAAGTTTTGACTACGTGTGATTTTAATCCCTTGAAGAATTCCTATGGTTGGAAAGTAAGATGACCT ATAGTTCTTATGTTGAACTCGAAACCTGGTTCAATATCTAGCTTGCCCAAAAGTCGAGTGGAAGATGATCTTGACATTGT GTCTGCCACGTCTATCCTAAGCAGTGTTGCTTCTAGAGGGCATATCTTAAGTTTTAGATCTTTGAATTGGATGGGGTTTC AACGAATGTAAAGCTTGTATCCAGGGCTGCAGAGAGACCCTAGGAAAATTCTTCCATTACGAGGGTCAAATTGGACGTGC AAGTTCAGTAACATTAACGCACAATTCTACTAGATTATCTGGACAATAATTTACTCATATCAAGTCTGAATTGACTGTAG TAAAAAACAATTTACTCCTTATGGGCCCAAAAGCATATGTCAATGATTAGAAAGGCACAAGATCCAAGATAGGACGTAGT CAGTACTATAGACAGGAATATGATAGCTAAGGATCTTTTGTCACTTACGTCATTCAAATTCCAAGTGTTTTGCCAATTGT GGTTGTAGCTATATTCTTGCTGTTTTCATCTTTGAGTTTTGCCCATGATGATGGGTTGCTAAACTCCAATTTTATGGTTT TAATCTTCACTTGTATGCAAACTTGAGATTTTGTTCTTATTATTATATTTCTTCTTGTTAATAAACTTGATAAGTTATTT CTA
CDS sequence (LotjaGi6g1v0183200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCAGCATGGTGGAGTTGCAACTGGGTCGCATGAAAGAAACGAACTTGTTCGAGTTAGACACGGTTCTGATCATGG GTCCAAACCCGTAAAGAATTTGAATGGTCAAATCTGTCAAATATGTGGCGAAACTGTTGGCCTAACAGCCAACGGCGATA TCTTCGTTGCTTGCCATGAGTGTGCTTTCCAACTTTGTCATCCTTGTTATGAATACGAGAGAAATAATGTGAGCCCATAC TGTCCCCAGTGCAAGACTAGATACGAAAGTCACAAAGAGAGTTCTCAAATGGAGGGAGATGATGATGATGATGATGATGA AGATGATGTCGATGATCTAGAGAATGAGGTCAAGTATGGTCAAGGAAATAGAATGAAGGCAAGGCTTCAATGGGAAGAAG ATGCTGACCTCTCTTCATCTTCTGGACATGATTCTCAAATGCAAAATCCTCATCTGACAAATGGGCAGCTGATGTCTGGT GAGAATCTATGTGCTACTACATCAGGTCCTATGGGTCAATCCAAAAAGGTTCAGTCACTTCCATATGTTGATCCAAAGCA ACCAGGTCTTGAGAGTGATGAGGAGATCAGAAGAGTACCGGAGTTTGGAGGTGAGTCTGCTGCCACTTCAGCTTCTCGTC CTGACACTGGTTCAAATCCTGGTCCAGAGCGTGTTCAGGGAGCAGGGGAGGGTCAAAAGAAGAGAGGGAGAAGCTCAGCA GACAAAGAGAGCAAGCGGTTGAAGAGGCTACTGAGGAACAGAGTTTCAGCTCAGCAAGCAAGGGAGAGGAAAAAGGCATA CTTGACTGATTTGGAAACAAAAGTCAAAGACTTAGAGACGAATAATTCAGAGCTCAAAGAGAGACTTTCCACTTTGCAGA ATGAGAATCAAATGCTAAGACAGATATTGAAGAACACTACAGCAAGCAGGAGAGGGAGCAATGGTGGTACCAATAATGCT GAATGA
Protein sequence (LotjaGi6g1v0183200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDQHGGVATGSHERNELVRVRHGSDHGSKPVKNLNGQICQICGETVGLTANGDIFVACHECAFQLCHPCYEYERNNVSPY CPQCKTRYESHKESSQMEGDDDDDDDEDDVDDLENEVKYGQGNRMKARLQWEEDADLSSSSGHDSQMQNPHLTNGQLMSG ENLCATTSGPMGQSKKVQSLPYVDPKQPGLESDEEIRRVPEFGGESAATSASRPDTGSNPGPERVQGAGEGQKKRGRSSA DKESKRLKRLLRNRVSAQQARERKKAYLTDLETKVKDLETNNSELKERLSTLQNENQMLRQILKNTTASRRGSNGGTNNA E
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| MobiDBLite | 14 | 28 | 15 | - | – | |
| Gene3D | 22 | 113 | 92 | 1.4E-35 | ||
| SUPERFAMILY | 23 | 110 | 88 | 9.36E-33 | – | |
| Pfam | 29 | 105 | 77 | 1.5E-34 | ||
| CDD | 37 | 87 | 51 | 9.69078E-25 | – | |
| ProSiteProfiles | 39 | 85 | 47 | 8.594 | ||
| MobiDBLite | 91 | 264 | 174 | - | – | |
| MobiDBLite | 98 | 114 | 17 | - | – | |
| MobiDBLite | 115 | 139 | 25 | - | – | |
| MobiDBLite | 140 | 175 | 36 | - | – | |
| PANTHER | 165 | 319 | 155 | 5.1E-61 | – | |
| PANTHER | 165 | 319 | 155 | 5.1E-61 | – | |
| MobiDBLite | 228 | 264 | 37 | - | – | |
| Coils | 240 | 309 | 70 | - | – | |
| SMART | 241 | 305 | 65 | 1.2E-16 | ||
| Pfam | 242 | 303 | 62 | 2.6E-14 | ||
| ProSiteProfiles | 243 | 306 | 64 | 12.633 | ||
| SUPERFAMILY | 245 | 303 | 59 | 1.94E-13 | – | |
| CDD | 246 | 297 | 52 | 4.58801E-20 | – | |
| ProSitePatterns | 248 | 263 | 16 | - | ||
| Gene3D | 264 | 305 | 42 | 1.7E-21 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi6g1v0183200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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