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LotjaGi6g1v0187900.1

Overview

Field Value
Gene ID LotjaGi6g1v0187900
Transcript ID LotjaGi6g1v0187900.1
Lotus japonicus genome version Gifu v1.2
Description Elongation factor 1-beta 1; TAIR: AT5G12110.1 elongation factor 1-beta 1; Swiss-Prot: sp|Q84WM9|EF1B1_ARATH Elongation factor 1-beta 1; TrEMBL-Plants: tr|I3SIG0|I3SIG0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0187900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:48197041..48200304) extracted from Lotus japonicus Gifu genome v1.2.

ATTATTTTCCGATTGAAAGAGAATATACCTTTATTCACTCACCAGTCACCACTCACTCAGCTAGGGTTTATTCATTCATA TTATAAATACCGATAATTGACCACCGAAACCCCTCTCTCTGTTGCAACCCTTCTCTTCCGCTTCCACAATCCAACCTCAA GGTTTCAACATGGCCGTGACCTTCTCAAATCTCCACACCGATTCAGGCCTCGAATCCCTCGACGGCCACCTCTCCGGCAA GACCTACGTTTCTGGGTAAACACAATAACACTAGCATCTCAATTTCTCTCCTATTTTTCATTCAATTTTTGTTTGTTAAT TGAAAGTTTCAATTTTTTCATCTGGGGTTTCTCTGATTTGTGTTTCTCTGATTGGGATTTCAGGGATCAGTTCACCAAGG ATGACATCAAAGTGTTTGGTTTTGTTTTGGAGAAGCCAGGTGACAATTTCCCCAATGCGGCCAAGTGGTACGATGCTGTC TCTTCTCACCTTGCTGCCAGGTTTGTTGATTGTTCCTCTACAGATTTCTGCAACTGGGTCTGTTTTGTTTTGCTCATTGT GATTCAAATCTGGGTTTTTTATATTGAATTTGGCTGATATACTCTAGGGAGTAAAAGTAATGAGTTATATTTATTGATTG GAATTGAACATTAGAGAATTTGAACAATTTACAGTGTGATTTTTCTATTAAATTTATTACTGAATCCTTTGAAGTGAATC ACTTGCTCTAGAGAAGGCTAATCGTTTTAGTTGATTTTGTTATAAATTTATTACTGAATCCTATGAAGTGAATCACTTGC TCTAGAGAAGCGGCTAATCGTTTTAGTTGATTTTGTTATTGATGTACAGCATTTTTCTTCTTGTTTATTCACTAATTTAC CTGCCTTTTTGTATGTTAAGCTTCCCTGGCAATGCTCAAGGAGTAAGATTCAGTGGCAAAGCTGCTGCTAAACTGGTATG CATGCATATATTTTATTTGTTTTTGGTTGCTTCATGTTTGTGAATTCTATTGCCTTCATTTCAAATATATTAAAAAAATT TGTGATTCTTAACTTATTGGGGGTGATGTGTGTGCAAATAGAAAAAACATTGGATGAAATCTGTAAATTGCTTGTACATC AGAGTGATTATTTGTAATTTAGGTGATTATAAACTACAAATGATATGCTTTGCAATCTAACTTTTTTCATTTTCATTTGC ACCTATGACAATGTTGTAACTACTTCTAAGGAATATTCTCAGTAGTTAAAATGGAAGCATTCAAGGTAGTGGGCACATTA TATATTTGTGTGCTATTTATTGACTTTGGAGTTTTGATTGTCTGTTGTTACTGACTAATGTTGGCTGAATGTAGTGGTTT TAAGTAATGGGCAGTGGTTTGTGATGGGTTGGGTAGAAATTGGAAAATTGTTTGAATGAGTCCATGATAGGGTGTACCAC AATGGATGGTGGTTTGATGATACTTCGTATGTTTTATATTGAAGAAAGAGAGTGTAGAGGGCTGTGATAAAATAATCTAG TAATTTGCTTCTTTTTAAGTAATGAATCTCTCTCCACTTTGTCCAAATCCAGTGATTTCTGTTGGCTGATGAGCCCTCCA AACCATTATACTCTCTTGAACAAAAGCTTCCCATGCAATGAATTTTGTATAAGTCATCCTACTTCATTGAGATAAATATA CCTTAAGTTATGAATGTAAGATATTGTTTTAGTACTTTCGCCAAGGCCAATAAGCCTATTACTTTAAGTCTTCAACCAGT TTGATTATCTGGATTTCTTTGACCTTGACAGGATGCTTCTGCTGAAGATGATTTGAATAAGGATTTTCAAAAGGTTTCTT TGGACACTGCTGAAGATGATGATGACCTTGATCTTTTTGGCGATGAGACAGAGGAGGACAAAAAGGCAGCGGAGGAAAGG GAGGCTGCTAAAAAGCCTGCCAAGAAGAAAGAGAGTGAGATGTCTTTCGATTCTTGACTATAATTTGCAGTTCATGTAGC ATTTAACATAAATAAAATATTGAGAAAAAGTTGCCGTTAAATTATACAACCCACTTTTTTGCTTGTTACATTGGAGCTAG AACATTCAGTTATATGGTGAAATTGCACTAGTTTATCTGCTCCTCTTTTCTTGTTCCCTACCAAATGTAGTTAAAACTGT TATCAATCTTTTAGGTGGGAAATCTTCTGTGTTGCTCGATGTTAAGCCTTGGGATGATGAGACAGACATGAAGAAGCTGG AAGAGGCTGTTCGCAGTGTTGAGATGCCTGGTCTATTTTGGGGAGCATGTATGTCAACTTTTCTTATATTTTTTGACATA TGTCATGCATTTACCTTGCATAGATTCTAATATGAACAAAATTCTTTGTTGATGTTATGTTACACAGCCAAACTGGTTGC TGTTGGTTATGGCATCAAGAAGTTGCAGATCATGTTGACCATTGTTGATGACCTTGTATCTGTGGACACCCTCATCGAGG AGTGTCTGACTGCCGAGCCTCGTGACGAGTTTATCCAGAGCTGTGACATTGTTGCATTTAACAAAATCTAAGTTTTCTTT TCGAACTTCAGCATAGCCATTTTCAAGCGGCTGACAAGTCTGTTTTTATTTGATAAGCATTTATCCCCCACCCCTTTTCA TCATTTGTGTCTAGCTTGTGCTTGAATGTTGCTTTTTTGTTTCTAGAATTATGGACGAAGTAAAAGAAATATATATTCTG AATATGTGATGGTGTTCCCTTAAGTGTTATTCTTGAGAACTGTTGAAGGGTTTCCATTTGTTTGTGGTCCCGACCACTTG ATTTTTGTTGGCTCAACCTCAAACTTCAGTGTGCAATTTTGCTTCATGGCTTACTTCCTTCACCTCCGTTTGGTTTGCGA TTCTTTATTATCTTTTGTCATGCTTGAGTTTTGACTATTGTAACGTCAATTTTGAAACGACGTTTTTGTTTGTATTTATG TTAAGTAGGAGAGACTTTAGTCCTTGAATTTTAGTATGTGTGAAAATCAAGTCCTTTTGGTAGAGGGATATTCAAATTTT GACGAGAAGTATGTGGCATGCTGGATCTTTGTGAGACTCTCCTCCGCAATTATCTCTCCAGCTTTAACTTCACCAAATTC CACCCAAGGTTAGGTCACTGGGTGGCTTAGTTTAAAAGAGAAATTAAAAAAGGCTTTAAATGATTCACATTGATGGGAAT GACATTTTTATTCCAATTTTTTTGTAATTTTAAGGGTCCTTTTTATAAGAAACATTACATTTTC
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0187900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCGTGACCTTCTCAAATCTCCACACCGATTCAGGCCTCGAATCCCTCGACGGCCACCTCTCCGGCAAGACCTACGT TTCTGGGGATCAGTTCACCAAGGATGACATCAAAGTGTTTGGTTTTGTTTTGGAGAAGCCAGGTGACAATTTCCCCAATG CGGCCAAGTGGTACGATGCTGTCTCTTCTCACCTTGCTGCCAGCTTCCCTGGCAATGCTCAAGGAGTAAGATTCAGTGGC AAAGCTGCTGCTAAACTGGATGCTTCTGCTGAAGATGATTTGAATAAGGATTTTCAAAAGGTTTCTTTGGACACTGCTGA AGATGATGATGACCTTGATCTTTTTGGCGATGAGACAGAGGAGGACAAAAAGGCAGCGGAGGAAAGGGAGGCTGCTAAAA AGCCTGCCAAGAAGAAAGAGAGTGGGAAATCTTCTGTGTTGCTCGATGTTAAGCCTTGGGATGATGAGACAGACATGAAG AAGCTGGAAGAGGCTGTTCGCAGTGTTGAGATGCCTGGTCTATTTTGGGGAGCATCCAAACTGGTTGCTGTTGGTTATGG CATCAAGAAGTTGCAGATCATGTTGACCATTGTTGATGACCTTGTATCTGTGGACACCCTCATCGAGGAGTGTCTGACTG CCGAGCCTCGTGACGAGTTTATCCAGAGCTGTGACATTGTTGCATTTAACAAAATCTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0187900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAVTFSNLHTDSGLESLDGHLSGKTYVSGDQFTKDDIKVFGFVLEKPGDNFPNAAKWYDAVSSHLAASFPGNAQGVRFSG KAAAKLDASAEDDLNKDFQKVSLDTAEDDDDLDLFGDETEEDKKAAEEREAAKKPAKKKESGKSSVLLDVKPWDDETDMK KLEEAVRSVEMPGLFWGASKLVAVGYGIKKLQIMLTIVDDLVSVDTLIEECLTAEPRDEFIQSCDIVAFNKI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11595:SF24
1 232 232 2.2E-114 –
PANTHER
PTHR11595
1 232 232 2.2E-114 –
Gene3D
G3DSA:1.20.1050.10
6 69 64 2.2E-5 –
SUPERFAMILY
SSF47616
11 64 54 1.81E-8
IPR036282
ProSitePatterns
PS00824
108 116 9 -
IPR001326
MobiDBLite
mobidb-lite
120 140 21 - –
Gene3D
G3DSA:3.30.70.60
136 232 97 7.9E-41
IPR014717
SUPERFAMILY
SSF54984
140 232 93 2.09E-29
IPR036219
CDD
cd00292
141 232 92 3.19089E-35
IPR014038
SMART
SM00888
143 232 90 2.6E-32
IPR014038
Pfam
PF00736
145 232 88 2.8E-30
IPR014038
ProSitePatterns
PS00825
221 232 12 -
IPR001326

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003746
Molecular function Translation elongation factor activity Functions in chain elongation during polypeptide synthesis at the ribosome.
Subterm of
GO:0005853
Cellular component Eukaryotic translation elongation factor 1 complex A multisubunit nucleotide exchange complex that binds GTP and aminoacyl-tRNAs, and catalyzes their codon-dependent placement at the A-site of the ribosome. In humans, the complex is composed of four subunits, alpha, beta, delta and gamma.
Subterm of
GO:0006414
Biological process Translational elongation The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
Subterm of
Part of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0187900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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