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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0188200 |
| Transcript ID | LotjaGi6g1v0188200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB-related transcription factor; TAIR: AT2G26960.1 myb domain protein 81; Swiss-Prot: sp|A2WW87|GAM1_ORYSI Transcription factor GAMYB; TrEMBL-Plants: tr|K7LXA1|K7LXA1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0188200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:48291003..48298020) extracted from Lotus japonicus Gifu genome v1.2.
GTTTCTTTTTAACTTTCATTTTCAAGCTAAAAAACAAAAAATTTATATTTATTATTTTTTGAAAAATTGAATCTTTTATT TTTGTAGTGTTTTATACTACATTAAATCCAAAAATAATACCAACAATATTCTACTCGTGAAAGCTAAGTACACATCAAGT TTCATCAACTCATATATTTGGATCTGTTGTTGTTGTACTTGTGAGGGTCCTTTAATCATTTCCCTTTTCATGAATCATTT TTATTCAATTTCAGGTTCATTTCTCAAATCACTTTCTGGGTTTTGTTTTTCTTCTCATTTCTTGTTCTGGGGTGTTCAAA GTTTTGATTTTTCATTTGAATTTTCATGTTTTTGGAGTAAATTTTGTATCTTTCTTTTGTTTTGGGTGATTGGTGTCATT GACTGTATTCAATTTCGTGTCTTGTATCAGAAAAATGTGATTGAACGTGGAGATAAGGCTGTCTTGTGGTGATTCTTGAT TTTCTGATTCAGCAAAGGAGAAGTCCTAATCTGAATTCTGAAGGCTTGTTATCATCTTCATTCATCCATTCTACTTCCAT TTTCTTGGTTCCAAGGATCAGTTTTGCTGTAATTTTGAAGAGGGTAGATAGACACTTGAGCTGGAGATAATTGATTTATT CAGGTGAATCTCTTTTCTATGTATCTGTTTTGTTCAATTTTATTTATGAATTTTGAATCTTTATTTGATTTATGTATTCT CTGCTTCTCATGCATGGCTGGATTTAACAATTGAAATAACTGACAGCCTGACAGGCATACAATCAAGAACAAAACACTGC TTGGATTTTTTATTCATTGGTTTTGATTCATGAATTTGCGGATCAGTATCTGATTTTGGATTTTGAAACTTAACAAAAGT TGTCATTTTTCAATAAAATAATCACATGTGAATGATTGAAAAGTGAAAGCTTTAATTTTGAATGTGTGAAGGTGTCATGT TGCAAAATGTTGTAGCATGCCTCTTAGCATAATTTTTGGTTTTAATGATGCTGGTTTGTGGCCACTCTCCTTTACTGTCT TGATTATGCCTTAAAACCTGGAAAATTTTCAAAAAAATAATCACATGTGCATGACTGAAAAGTGAAAACTTTAAATTTGA ATGTGTGAAGGTCTGACTGTTGCAAAATGTTGTAGCATGCCTCTTAACATAATTTTTGGTTTTAGTGATGCTGACTTGTG GCTACTCTCCTTTACTGTCTTAATTATGCCTTAAAACCTGGAAAATTTCTCTACACATGTAGGCATATTGAGAGTCATGA GTAGCACCACAACAAGTGGGAGTGAGGGTCAAAAAGTGACCAAGCGTCGCCGGTCATCATTATCAGCTGAAGAAGGTAGT AGCGGAGGCAACTCGACAGGAGAAGGTCCTCTGAAGAAAGGCCCCTGGACCTCAGCAGAGGATGAAATTTTGGTTGACTA TGTCAAAAAGCATGGGGAAGGGAATTGGAATGCAGTTCAAAAGCATTCAGGACTTGCCCGTTGTGGAAAAAGCTGCCGTC TGCGATGGGCAAATCATTTGAGACCAGATCTGAAAAAGGGTGCATTTACTACGGAGGAGGAGAACCGGATCCTCGAGCTT CATGCTAAAATGGGAAATAAATGGGCTCGAATGGCTGCAGAGGTTTGTAGTAATTTAACTCATTTTAATGTTTTGCCATT GTATATTATGCTGTTGTTTGGCTAAACTGTGGAAGCTTACCGGTCATGGTTTGCATTTGATAGCACTAAAGATGAATTTC TGGTATGGATAATGCAGTTTTAATAGAATGTGGTACTGTTTTTGTCAATATAAACTTAAAAATAGATGTGCATTCCACAA AGAATATACAGGCTTATAGTTCCTCACAATATGTTGATCTCTGAATTTTGGATGCGATTCGAATAGGTCTAAGCTTAATT GCCATTGAGGTGTGATATTCAAGCATGGTGCCCCTCCCCAGATATATTTTTACTCATGCTTCTTCATGCTTGCAAATCTT TAGTTTGACTCTTGATCAACAAAATTTTCATTAGGTGAATTTGATCCTATTGGATTGTTTAAGCATTGCGATTTTGCTGT GGTGATATCATTGCAATCTCTTAACATTTCATAGCTTTTGGGAGTAATTTTCTGTATTGAATAACTTTAAGGCCTTTTGT GATGCCATTTTATTGGTTATCTGATTAATTAACAAAATGTCCCATTTTATTCTTTGATGGAAAATTATTTTCTGTTTCTT ATCAAGAAGTTACATGAATCTTCTATTGATTTTGTAATGTAATAATAAATAAGTTATTTATTGGTAAAACGGGGTCATTC TTTTAATGAGTTAAAGAGTCATTTGAGGTGCTTCATAGTTCATCCTCTCTGTTCCAAGCTATAAATGCCAAATAAAAGCT TCTATGGGGTGTTCGTTATGAAAGCATTAGTATACATAAATAAAATGTATTTAGTACAAACATTTTCTACTTTTTGAGAA CAAGATATTAAATTCTGTTGATTTTATTGGTTGGTTATATTGTTGAAGATATTATATTAAATAGACATTATTCTATCTTG TCGGATTTAGCAGTCAGAGTCAAGGGAAGGAATTTAAATCTGTGGTCTAGTGTTAACTAAATATGTCCCATTCAGTCAAT GGTCTAGTGTTACCAACAGAATTTCAATCTCCGAATATCTTGTGGGATTTTCACCTGAGAATCTGTTTCCATTAAGCAGC AGAATTTGCAAGTTCGGAAAGTTTCCTATTGAAGCTGGCAAACACCCTCATAAGGGATTGTTTAAAAGACTCAACTGTGC AAGTTTGGAGGGCGGGTTGCTTATTTCTTGTGGAAGCTCACCAGTGACACAGTCGTTCTGCAGTTCCAAAAGAGATAGCT CAGGAAAATAAAGAAAATCATGTAGTAGTGAACCAGTTAAATAGTTTTGACCCAAACAAACTCTTTGGAGTGTGTAGCAT TGACCAAGTTCATCAGGCAAAGATCCAAACAGAAAGTTTCTTAGTAACGTCAAAATCTGCAGCCTCAGCCAATTTCCCAT TCTCACCAAGCTTTGGAGGAATCACTGCAGTGAAGCTGTTCTGCCAAAGCTTCAGCACCTCCAGGTTAGGTAGCTGGAGG TGCACCTGGGATGCAGTTATCCTGGTTGAGTGGCAGTTGGTCTAATTGTTTGGGGGGAGAGGGTGGTGGCGAGAGTTGTG TGGGAGAGATTAGAGAGAGGTGGTGGGTCCATCTTCTTAATGTGACGTTAGAGTCCCTGAGTATGGTAAGTGCTTTGAGT CTTAATGGTGCTGCCTCTAGGTTGGGGCTTTCTCTCATTATCATGGTGATGAGTGATAGATAGAAGAGAAAATGACTGAG TGAGTGAATAGAATGTTAGAATGCTGCAATGCAATGCATTGGGAAAGCTGAGAGAAGGTGGTGCATTTTAAAGGCTAGAG TTGGTGGCGGTAAACATCGGTTCGCTCATTTGCATGTGGACTCAATGCGGTGAGGAGCAGATCTAGGGCAAATTCTTCAA CTTGTGTCTGGCAATTACCAATTTACTACCATTCTCGTGCAATTCAACTTGCGTCTGGCTATTACCAATTCACACTCTTT CAACCAGGCCACATGCAAATTTTATCACACTTTATTATCCCGGTATTGTGACCCAATTTCATTCGAACCCTTGTTGCACC AAATTTCCAGCAGCAGGGAACATGGCACTCCTCCATCCTTGGCTTATTGCGCCGTCGCCTAAGCTTCTGTCCAGTGGTGT TGTCGTCGTCTGTGCTTCCTTTCTGCCATATTTTGACTTTGAACTTTGCTTCTCAGTTTCCTCTGTTCGAGCCCTGCTTC TGTGACATTATCTTCTCCTGTTCTGGTCTTTTCAAGCCTTACTTGTTCATCTTCTTCTTGTTGTCTTTGTCTAAAAGTGT CTGGGAGTGGGAACGCAAGTTCAAGTGCTGCTGTTCGCAGCTCCATTGGAAGATGATTACAGAGATTTTAACTTGAAATG CTTTGCTTGATTAGTTTTAGATGTTTAAGATTTAAGTTTTATGCCTTGTCTCTTGTCAAAAACTTGGTGTGGAGTTGTTA TATTTTAAGCACTTTATTTATGATAATATGAGTTCATGACAGTCTTGTGGCTTTATGGATTTCTATCTAATTCCATATAT ATATATATATATATATATATATATATATATATATATATATATATATATATATGAATTTACCTCCATGACTTAATCTTCAA ATCGTATATGGACTATTTCTATTCTCAACCAATATAGGACAAATATACTTATTAATGCACAATATATAGCAACTAAATTG CTGATCAAAAAAAAAATATAGCAACTAAATTATAACTATATTTCACAAATAATTGAACTGAATCTTTGAAGTAACCACAA AAGTTAAAATGAATTTTCTAAATATGTGTTTTAGTTAATAGTCAAACTTTATACACCGAAGCATGTTCCTATGACTACCA ACAGGGCAATTGTGCAATTATAGCAGTATATTTAATTTATTGGAGAACTGTAAATTTTGTATATATACAGCAGCCTAAAG TATAAACATGTTCATGGTGAATTAAGTTTCATTTCCATGCCTACTTGAGTTCATTGGTGTTATTGTATATTGTGTTACAT TTCTGAACTGTGTGCCATCTTATTTTCCCTAGTTTGCATGATTTTTTTTTTCGTGGTCATACTTGTTTCTTATGAAGATA TAATCAGTGTGAATATTGAAAAATTTGGTAGGACAGTATTGAAATCTGATGCCTCTGCAAATATTCATAAAATCTAGAAA TTTGAATGGACAAGTGTGGGAGAGGAAAATAGAGTAAAGAAATCTACTGAAGCTTTTGCTGGCAAGCAGTGAATATTAAG CAGGTTGGGTTGGATAGAGAATTGAATATTAAGCTGCAAAGTGCAAACTACATAATCTATATAATGCACCTTCTCGTACA ACATCCTTTCCTTATTTCTTCCTAGTTAATGTTTCTTGTTTTGTGTGTCATTGAGCCTAATATATATTTTTCTCTAACCT ATTTACTTTGTGTTCATTCCTTTCTCTGTTTCAGTTGCCTGGACGTACAGATAACGAGATAAAGAACTACTGGAACACCA GAATCAAGAGAATGCAACGAGCCGGCTTGCCACTCTACCCCGAGGAAATATGTCGACGGGTGTTCACTGGCAATCAAGAA AACCTAAATGTTGGCACCTTGACAAATGAAGCCACCCATCATGATGATCTCTCACAAACAGACAACAATTTTGTCGCACC TGATGTGGATTTTAGAAATTTCAAACTTCGTCGGGATGTATTATACGAGCCATCAATTTTCGAAATGCCTGAAAACAGCG TGGTTGAGCAAAATCCGGATCCATCCCGTGGTTACATCTTGTTGCCAATGGTGCATCCCTCCAAGCAGCTTCCGGAGTCA GATATGATGCATACTAGTTTGGGCAGTGCTGCTGTGTTTGATCAGTATGGTAATCATACTTATGAGAACACTTCTGACCC TCCTAAGTTGTATGGCAATTATACTTGTGAGAACAATTCTGACTCTTCTCTGTATGACCCTGTTCTTAGCGTCAGCTATC AGTTTCACGGGGATAACCTGGTTGGCAGCCATGCCACAAATGGCAATAACTCTTCTTCTTCTGCGGCCGTATCCGGGGCC ACGAAGTTGGAGCTCCCTTCACTCCAATATTTCGAGACTCAACAAGGTGGCTGGGGCAGGCCTGCACCCCAACTTCCTTC ACTTGAGTCTGTTGATACATTGATTTCTCCTCCAGTTGAACTTACTACTCAGTCAGATCCTGTTTCTCCAGAAAGCAGTG GTTTGCTGGAATCTATAATCTACCATTCAAAGAGTTTGAAAGTCTCTAATGTTGATTTGCAAGACACTGTTCCTGTTGAA ACAGACAAGAATTTAGCCTCTAATCCTGCAAAGACAGAATGGAATGAACAACTGGAGACACATTCCCCCTTAGGTCAGTC TACTTCAGACTATACTCCTATTAGAATGTGCTTGGTGGATGAGCCTCAATCAGTTGAAACAGGTTAGCTCTTTTTTCACA CCATTTAGTTTTAGGATTTAATGTATATGCACTGTCAATGTAAAACATCTACTGATTGGTCTCCGCCTCATAAAATGTGC TTTTAATTTAATTGAAATGAAAAGGAACGTAACTACTTTTAAATATGTGGCATTAAATGATTGACTGTCAGTGTAAAGAA GTTTTATCCTGACTGTGCATATCAAAATTAAACTTAGTTTTTAATGTGGTCCATGAACTTATTTTAGGAGTCTGATTAAC AAATTTTCTTCTTGTTTGACAGAGCATGTGCATGAGGCAGATACAGCTTATAGCTTCAGTAATAAAGAGAATTTGAATCA GATAAATATTTCTAGGCCTGATGCTGTATTTGACTTGGGTTGGTTTGGGAATGATATGTGGCAATGATCATTCTGTTCTA AAAGATGCGAAGTGCACTTCTTCATGAAGATTTTCATGGTTAGCACTCTCAAGTGCTAAATGGATGATCTGGATATTGCT TTGACCTTAATATATAGTGCTGGTATACGTGCATGGTCAACTTACAAATCACTATAAGGTCAATGCTTTTTTAATGTATT GTCAGTCATGTCTAGAACCTTCATTTGTGATCAGTCATGTTATGAAGATAGTCTTATCTCATGTTGTCACTTTAGGTAGT GTTGATATTGGAAGATTGTTGTTGTTTGAAGTGTTATGAACTGTGTATTTATTCCTTATGCGACTTCCATAAGCTTATGC GTGTATTTTTTGTTGCTCGATTTGGCTTGTGATTTATATTGCCTTCAACAGCACAACTAGAGATTTATATTACTATAAGC TATTTACATAACTTATCTCAAACACATACATAAGATCTTATGCTATAGATCAGCTCGAATAAGTTTCTCTAAACAGGGCC AAAGTAGTTCTTAGAATTTAATAAGAAATATGGATTTCAAAGTTTGTATTTTTTCTGG
CDS sequence (LotjaGi6g1v0188200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTAGCACCACAACAAGTGGGAGTGAGGGTCAAAAAGTGACCAAGCGTCGCCGGTCATCATTATCAGCTGAAGAAGG TAGTAGCGGAGGCAACTCGACAGGAGAAGGTCCTCTGAAGAAAGGCCCCTGGACCTCAGCAGAGGATGAAATTTTGGTTG ACTATGTCAAAAAGCATGGGGAAGGGAATTGGAATGCAGTTCAAAAGCATTCAGGACTTGCCCGTTGTGGAAAAAGCTGC CGTCTGCGATGGGCAAATCATTTGAGACCAGATCTGAAAAAGGGTGCATTTACTACGGAGGAGGAGAACCGGATCCTCGA GCTTCATGCTAAAATGGGAAATAAATGGGCTCGAATGGCTGCAGAGTTGCCTGGACGTACAGATAACGAGATAAAGAACT ACTGGAACACCAGAATCAAGAGAATGCAACGAGCCGGCTTGCCACTCTACCCCGAGGAAATATGTCGACGGGTGTTCACT GGCAATCAAGAAAACCTAAATGTTGGCACCTTGACAAATGAAGCCACCCATCATGATGATCTCTCACAAACAGACAACAA TTTTGTCGCACCTGATGTGGATTTTAGAAATTTCAAACTTCGTCGGGATGTATTATACGAGCCATCAATTTTCGAAATGC CTGAAAACAGCGTGGTTGAGCAAAATCCGGATCCATCCCGTGGTTACATCTTGTTGCCAATGGTGCATCCCTCCAAGCAG CTTCCGGAGTCAGATATGATGCATACTAGTTTGGGCAGTGCTGCTGTGTTTGATCAGTATGGTAATCATACTTATGAGAA CACTTCTGACCCTCCTAAGTTGTATGGCAATTATACTTGTGAGAACAATTCTGACTCTTCTCTGTATGACCCTGTTCTTA GCGTCAGCTATCAGTTTCACGGGGATAACCTGGTTGGCAGCCATGCCACAAATGGCAATAACTCTTCTTCTTCTGCGGCC GTATCCGGGGCCACGAAGTTGGAGCTCCCTTCACTCCAATATTTCGAGACTCAACAAGGTGGCTGGGGCAGGCCTGCACC CCAACTTCCTTCACTTGAGTCTGTTGATACATTGATTTCTCCTCCAGTTGAACTTACTACTCAGTCAGATCCTGTTTCTC CAGAAAGCAGTGGTTTGCTGGAATCTATAATCTACCATTCAAAGAGTTTGAAAGTCTCTAATGTTGATTTGCAAGACACT GTTCCTGTTGAAACAGACAAGAATTTAGCCTCTAATCCTGCAAAGACAGAATGGAATGAACAACTGGAGACACATTCCCC CTTAGGTCAGTCTACTTCAGACTATACTCCTATTAGAATGTGCTTGGTGGATGAGCCTCAATCAGTTGAAACAGAGCATG TGCATGAGGCAGATACAGCTTATAGCTTCAGTAATAAAGAGAATTTGAATCAGATAAATATTTCTAGGCCTGATGCTGTA TTTGACTTGGGTTGGTTTGGGAATGATATGTGGCAATGA
Protein sequence (LotjaGi6g1v0188200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSTTTSGSEGQKVTKRRRSSLSAEEGSSGGNSTGEGPLKKGPWTSAEDEILVDYVKKHGEGNWNAVQKHSGLARCGKSC RLRWANHLRPDLKKGAFTTEEENRILELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPLYPEEICRRVFT GNQENLNVGTLTNEATHHDDLSQTDNNFVAPDVDFRNFKLRRDVLYEPSIFEMPENSVVEQNPDPSRGYILLPMVHPSKQ LPESDMMHTSLGSAAVFDQYGNHTYENTSDPPKLYGNYTCENNSDSSLYDPVLSVSYQFHGDNLVGSHATNGNNSSSSAA VSGATKLELPSLQYFETQQGGWGRPAPQLPSLESVDTLISPPVELTTQSDPVSPESSGLLESIIYHSKSLKVSNVDLQDT VPVETDKNLASNPAKTEWNEQLETHSPLGQSTSDYTPIRMCLVDEPQSVETEHVHEADTAYSFSNKENLNQINISRPDAV FDLGWFGNDMWQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 44 | 44 | - | – | |
| PANTHER | 30 | 488 | 459 | 2.0E-103 | ||
| PANTHER | 30 | 488 | 459 | 2.0E-103 | – | |
| ProSiteProfiles | 36 | 88 | 53 | 16.58 | ||
| SUPERFAMILY | 39 | 135 | 97 | 2.43E-30 | ||
| Gene3D | 39 | 94 | 56 | 9.1E-21 | – | |
| SMART | 40 | 90 | 51 | 8.7E-15 | ||
| CDD | 43 | 88 | 46 | 6.70066E-13 | ||
| Pfam | 44 | 104 | 61 | 5.2E-15 | – | |
| ProSiteProfiles | 89 | 143 | 55 | 24.417 | ||
| SMART | 93 | 141 | 49 | 1.5E-15 | ||
| CDD | 96 | 137 | 42 | 6.92541E-12 | ||
| Gene3D | 96 | 178 | 83 | 4.7E-19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0188200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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