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LotjaGi6g1v0193600.1

Overview

Field Value
Gene ID LotjaGi6g1v0193600
Transcript ID LotjaGi6g1v0193600.1
Lotus japonicus genome version Gifu v1.2
Description Haloacid dehalogenase superfamily protein; TAIR: AT3G58830.2 haloacid dehalogenase (HAD) superfamily protein; Swiss-Prot: sp|P38812|GEP4_YEAST Phosphatidylglycerophosphatase GEP4, mitochondrial; TrEMBL-Plants: tr|I1JWJ8|I1JWJ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0193600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:48990678..48995655) extracted from Lotus japonicus Gifu genome v1.2.

GAAACAGAAAGATAAAGACAGGAATGAGGTACCAGCTTCGAAAATACAAGGTTTAACATCTCTCTCTCAGTCGATAACAC AAACGCAACAGAGCGCAGCTCAGGCGAAAACACACGAACCCAGAATCCACCGCACACTCGTCACTCTCTTCCGGTGAGTT CTTCTTCTTTCCCGAATTCCAATGTAATCATAATATGAGACTTACAATTTTCATGCATTCTCTGATTTGGAAGAGGGTTT CAACCAGGGTTGTTAATGGCGGATAGCATAGCGTAGCGGCAACCCGAAAAATGCTATTTCGAGCGCTATAGCGGTGAATA GTGGAGTAGCAGTGAACCCCCAGGGTGCTACGCTATAGCGCGCTATTAACAAGCCTGGTTCCAATAAGTATGTTATTACC ATTTTCATTTGGTGTGCATGTTTGAATTGAGGGTGAAAGTGCTTGTATTTCAGTTTCATGAATTCCAAAACATTAGAAGC TAAATGGAAAAAGTTGTTGGATTGGTTTTGAAAGTCCTTTTAGTTACATTTCCGTTGAGTCAACAGTTTTCCAAAAAACT TGGGAGGTGTTGCATTGTAAGTATGTATTTGGATACAGTTGAATGCGATGTGAACAGACTTTTAACTCAATTCTTATGAA GGGTTCTATTCAATTTTTATCTTGAAATACATGTTAACGTCAGTTTGTACTATGCAAATGGATGACCAAACATATCTAAA TAAGTTGTCATCCAGTTTTCAACTGTCTCCGTTTCATTTGGTTTTTATTTTTGGGGGTATTGACTGTTGAGTAGGTCCAT AGGTCTGATGTGAAGTGATTTTCCTTCCCCCTTTATCATCTGCCTAAATGAAGATGAGCATTGTCTTGAACTTTTCTTTT ATCCCCATTATACAACTCACCATGTGATTTTCATAGGGTTATTTTCGCTGCAAAAACAACATATCACATGAATCCATTTA GTATATGTGATTTTCAGAGGGTTATTTTCTCTGTAAAACACATTGTCAACATATCACTCGAATCCATTTTATATATGTAC TAAGAAATTGCAGAGGAGAAGAATGAGAAACAGCACCCCCCCTCTCGATTTTATATGTTTCTTGTACTTAGAAACGAAGC GTGGTAGGATTGCATAATGTTTTAGAGCAATTCTGAGTTAAAAGTCGAGTTTTCAAGGATTTATTTTAAAATTGTAGTAG TATTTACTATTTAGTTACGACATTCTGGATCTTCATTTATGCAACTAAGCTTTCTCCAAATTTCCTTTTCTGGCAGGTGA TTGATACAGGATCAGTTACCTGATAGGTTAGTGCTGATTCATTATTTCACATGTGTTTTTTTATTTATGTAATTCTATGA TTTTTGAGATCACAGTGAAAAGAAATAAGTGCTCGTAAATGGAGCTCATGTCCCATGTAAGTGGTGAGAATACGTCAAGT TGTAAACTCAAATTGGTTTTTGGTGATGACTGATGACTAATAGTAAATTGACAATCTCTATAACTAATGGGAACAAATCT CTTTCCTTTGGTTATTGTTCTCGATCTAAAGTGGATATTGTAGACCTTGACATTTTTATTTGTATTACTTATTCTTTTAG TTGGGGGATTCATGCTACTTTTTTCTTTTCAAGGGCCCTTTCTATACAAATTATCTTTTGCTATATGTTTATCCTCCTTG AACTTTATTGGTGTTGCATTTGTTATTTGCTTATCTTGATCTTTAATATAAACCAAGATTCAAATTTTGTTTTGATTTTT TTTTATCTTAAGAATTCTAATTATGCTAATCATTGTTATTATAAATAGCAATTGTTGAAGCATACACCAGCAAAGAGTGG GCATGGCATTAGCTAAACAAGAAAAGCTATAAAAATGCCGTCAACCACTGTTGCTGCTCAACTTCCGAGTTGCTGGTACC GCATTCCCAGCCATCTTAACACCCACCATCATGCGCAACAAAAGAGAAAACTCACAACTCTATCACTTGCCAATGCAGAT AGCCAAATCCCCCTAGGAAATTTCTACAGCCCAAGTCTTCCTCAGGCCCACAGTTGCAGCAAGGGGCAAGGAATCAGTAA CAGGACCAGATACAATTTTGATTCAAATAAAAACCACAAACACCTATTGTTTCTGCAGTACTTCCCAATAAATGACTCAA AAGACGCCGATGATCAAAATCCCGAGACCAGAAACCAGAGTCAAGATCCATTAGACGAAGAAAGAGAATTCAAGAAAAAC AACAAAGCTAAGGTTCTTTTTACAAACATGTGGTGGGTAGATGTGAAAGCAGCATTTGGCCAAAGAATCAACTTGGAGGG CATTCGATGTTCAACTATGGTGATCTTAAAAGACCAGAAATTGGCACTGCCCCATATTTCTGTTCCTGATATAAGGTACA TTGATTGGGCTGAACTTCGTAGAAAGGGATTTAAGGGTGTTGTCTTTGACAAGGATAATACCATTACAGCACCTTACTCT TTAAAACCCTGGCCTCCGCTTGAGTCTTCACTGGAAGATTGTAAATCAGAGTTTGGTCCAGATGTTGCTGTATTTAGTAA CTCGGCTGGTAATTCTAGAATGGAGTATTTTGACATTGTTATGAATTTTTGGGCAGTAGTTGTTGTTCAAACAGTGACAC AATGTGTTCTGTGTTGTTTTATTGGTGTTGTAAATCAGGACTTAATGAGTATGACCATGATGGTTCAAAAGCTAGGATGC TTGAGCATGCAATTGGAATTAAAGTCATCAGACACAGTGAGTGTTGCCTTTTCTTTAGAGCTTTAATTCTGTAATGTTTT TATTATCTTGAAAATACATGTTATCCTCTTCTCTGACTCTTGAGTTGAAATGCTAGGATTGTTAAATATTCCCTAGCGAT AAATGACCCTAGGATTGATGTTGATATGTGTATTTATATTGCAGGGTTGAAAAAGCCAGCTGGTACAGCTGAAGAAATTG AAAAACATTTTGGCTGCGAATCTTCACAATTAATCATGGTAGACAAGAATTTCATAATGTTCATTTTATTTTGGCTCTTT GCTTTGCAGTTGGATTTGGATTCATATTAAACCATAAGCATTCTGTGGCAGGTCGGTGACAGGCCCTTCACTGACATTGT TTATGGCAATCGAAATGGGTTTCTTACTATTTTGACTGAACCATTGAGTCTTGCTGAGGAGCCATTTATTGTTAAGCAGG TTTGTTTTCGTTTGCATTTACTCTTTTGAGTGCTTAAAGTGTTTAGTTTGATTTCTTTCTTTCAATGATAAAAGATATTT TACTGGAAGAAGAAGAGTTCGATTCAAAATATGATATAAGAAAGAACGTGATTAAACTGATAAAAACATGAAGCATAGAA GCTGTCCTTTAGAGACAATTAATGAAAATCTAGTTAAAAGATGTAAATCATAGTTTCCCAAACGGTACTGAAAGATTATG TTGTTATTTGAGTAGGAAACTCTTTCAAGTTTATTGGTTGAAGAAGTGACTAAACTGAAGTACTGCAAATGTTATATGTA CCAATAGGAAGTAACTCAACTGATTTCGATGTATTGTACTTGTACAATTTCTTTTTCCTATGTGTTAACTTCCTGAGTTT CAAATTTTTTATATAACTCCTTTTTAAAGCTTGTCACATTGTATTCCAGATTCTGTATTGACGTTGAAACTTTAAAGTCC TAGTAGATCTCTTATGTTCTAATTCATCCTTGTCATATTTTCTAATGTCATCATTAGCCCTCCTTTATCCCTTTTAATTG CTTAGCAGAGTTACCTGCCATTTACTGTTGTTATTCTGCTTGGTGTTCTTCAATTTTGTTGATAAAAACATTTGTCAGGA GTTTTGTAATATATCGAACTTGATACTTATGAGAAAAGAAGCTGTAACTTCATACCTCGATTTCATTTGTCCAAAAGTGT CTTTAGGATGTTTTAGTGATTTTATATAGCATTTTCCATAAGTCATATCCTGTATGTTTTCATTTAAGCCAAAAGGCCTT TCCTATTGTTTCGGGGAGGGGGATTTGGGAGGGATGTTACACGTCAACAAAGAGAAGGTGTGTGTCTCTTAGTACTGATA CCACTGGAATGACAACTTGTAACCCTTGCTGAACATGTTTTTTTTGGACTGGCTTGGGGTGTGAAATCTGATTGACAGTT CTCTGCTCAACATTATATGAATATTGGTCAATGTTATATTTTATCACTATAAATCCACTTGAAAGAAAGAGAGAGGGTAC TAACATTTCTCTCTGATTACCTGTGTTTTAATAATTTTGATGACAGGTGAGGAAGCTAGAGACTTCATTTGTAAAGCACT GGTCTAGAAGAGGGTTGAAGCCACTTGATCAGAAGTTATTGCCAGATCCCATGCTATGTGTCAAGGATCCACGCCCTTGA TAGACTAATCTACAAAACCTTGCTCTTCTTATGGCCATCAGAATACTGCTCTTTAGTAATGCATGTCACTATTTTTGTTC AATTTATTTAGTTTATTTTCACAAAACTGGACATGTATGCCCCCACATCTTTAATTTGGTAAGTTATCATCACTACCTAG TCTCGTGTACCCTCAAAATGGGGGTAGAAAAAAAATAAGAAAACAAGTTTTCTATATAATTTTACATACAAATTTCAAAC GGAAATGTACTGTGAACTCTTTCTAACTCATTTGATCATTGATACAGATATTTGAAATACAATCTAGCTAGGCTGCCGTT AAAGCCTAAAAGCATGCTTATTTTGTATTTTAGGTGAAGGGTTCAAATGAGTTATTTGGCACACCAAAAGCTGAATAATG AAGGGTACAATTACACGAGCAGAGTTTTGATACTATGAAAGAAAGAATGATTTTATTTGCAAAGTTTAGTATTGATGCAG GAATAGATAAATTTAGATTAGGTAAGAATGAATTATTCTATTTATGGAGGAAGTGTACTTGTTCAATTCAAAAAAAAAAA TTTATGTATGTATTTTTT
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0193600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCGTCAACCACTGTTGCTGCTCAACTTCCGAGTTGCTGGTACCGCATTCCCAGCCATCTTAACACCCACCATCATGC GCAACAAAAGAGAAAACTCACAACTCTATCACTTGCCAATGCAGATAGCCAAATCCCCCTAGGAAATTTCTACAGCCCAA GTCTTCCTCAGGCCCACAGTTGCAGCAAGGGGCAAGGAATCAGTAACAGGACCAGATACAATTTTGATTCAAATAAAAAC CACAAACACCTATTGTTTCTGCAGTACTTCCCAATAAATGACTCAAAAGACGCCGATGATCAAAATCCCGAGACCAGAAA CCAGAGTCAAGATCCATTAGACGAAGAAAGAGAATTCAAGAAAAACAACAAAGCTAAGGTTCTTTTTACAAACATGTGGT GGGTAGATGTGAAAGCAGCATTTGGCCAAAGAATCAACTTGGAGGGCATTCGATGTTCAACTATGGTGATCTTAAAAGAC CAGAAATTGGCACTGCCCCATATTTCTGTTCCTGATATAAGGTACATTGATTGGGCTGAACTTCGTAGAAAGGGATTTAA GGGTGTTGTCTTTGACAAGGATAATACCATTACAGCACCTTACTCTTTAAAACCCTGGCCTCCGCTTGAGTCTTCACTGG AAGATTGTAAATCAGAGTTTGGTCCAGATGTTGCTGTATTTAGTAACTCGGCTGGACTTAATGAGTATGACCATGATGGT TCAAAAGCTAGGATGCTTGAGCATGCAATTGGAATTAAAGTCATCAGACACAGGTTGAAAAAGCCAGCTGGTACAGCTGA AGAAATTGAAAAACATTTTGGCTGCGAATCTTCACAATTAATCATGGTCGGTGACAGGCCCTTCACTGACATTGTTTATG GCAATCGAAATGGGTTTCTTACTATTTTGACTGAACCATTGAGTCTTGCTGAGGAGCCATTTATTGTTAAGCAGGTGAGG AAGCTAGAGACTTCATTTGTAAAGCACTGGTCTAGAAGAGGGTTGAAGCCACTTGATCAGAAGTTATTGCCAGATCCCAT GCTATGTGTCAAGGATCCACGCCCTTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0193600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPSTTVAAQLPSCWYRIPSHLNTHHHAQQKRKLTTLSLANADSQIPLGNFYSPSLPQAHSCSKGQGISNRTRYNFDSNKN HKHLLFLQYFPINDSKDADDQNPETRNQSQDPLDEEREFKKNNKAKVLFTNMWWVDVKAAFGQRINLEGIRCSTMVILKD QKLALPHISVPDIRYIDWAELRRKGFKGVVFDKDNTITAPYSLKPWPPLESSLEDCKSEFGPDVAVFSNSAGLNEYDHDG SKARMLEHAIGIKVIRHRLKKPAGTAEEIEKHFGCESSQLIMVGDRPFTDIVYGNRNGFLTILTEPLSLAEEPFIVKQVR KLETSFVKHWSRRGLKPLDQKLLPDPMLCVKDPRP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR19288:SF72
78 342 265 6.5E-110 –
PANTHER
PTHR19288
78 342 265 6.5E-110 –
MobiDBLite
mobidb-lite
94 115 22 - –
MobiDBLite
mobidb-lite
97 115 19 - –
SUPERFAMILY
SSF56784
120 305 186 6.89E-13
IPR036412
Pfam
PF09419
152 306 155 1.1E-42
IPR027706
TIGRFAM
TIGR01668
162 337 176 8.7E-54
IPR010021
Gene3D
G3DSA:3.40.50.1000
178 324 147 7.3E-13
IPR023214
TIGRFAM
TIGR01662
187 306 120 7.0E-18
IPR006549

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0193600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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