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LotjaGi6g1v0199000.1

Overview

Field Value
Gene ID LotjaGi6g1v0199000
Transcript ID LotjaGi6g1v0199000.1
Lotus japonicus genome version Gifu v1.2
Description ENTH/ANTH/VHS superfamily protein; TAIR: AT5G35200.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200; TrEMBL-Plants: tr|A0A072TEL9|A0A072TEL9_MEDTR Clathrin assembly protein; Found in the gene: LotjaGi6g1v0199000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:49574298..49578860) extracted from Lotus japonicus Gifu genome v1.2.

TGTGCGTTTATATCCACCAAAAAAATAAGGATATGTCACAAACGTGATCTTTGCCGTGCAACCTGCACATTTCTTTCACC GGTGTTCATCTCCGACAGCCAACCTGTTCATCACGTAAATTTCTTAGTGCACTTGTTTGCATTAATTCTTGTGTTCTTAT TTTCCTTACTTTGTAATCATAGTGATATTTTATTCATTCATTCATATGATTTTAGTACATGCAATAAATTTAATGTGTAA CAAATTAACTTGTTTGCCATTTAGAGAAACAACATTTCCAGTTGAAGAGATTGGCAGCCAGAGGTGACTTCATCATGAAG AAGAAGGTTAAATCCCATGGCGAATATAAGGTATTTATATACCTAAACCCAGCAAATTGTTTTGTAAATTTTTCTTAATT TTGTTCAAGGTTGCTTAATTTAAAGTGGTGGTGGCGATGAATGGCAGTTGTTGGATGCTGCAATTCTGAAGGCAACAAAC TCAGATAATGCATTGCCAAAGGAAAAGCACATTCGGAGTATGTCATTTTCCTTCAGGTTCTCAACATAAATGGTGAATTA ATATAGAGAAAATAAGTAACATAAAATCTATTTGTTGCTATTTGGTTATAATTAAAAATCTTACCCTGTTGTTGAACTTT AGCAGAAGCTTATTTTCCCCTACATATTCATCATTTATTTTAGGAACAATTCCATGCTGGACCGTGTTAAAAACTTGTGC ATTCACGAACGGTGTTTTTACTACTAATGTTTAGTATATGTTATTTACAATATGTTTTTTATGTGCTGCTGACAAAATGT GTCTTTTGGTGTTTTCAGCCATTTTTCAATCACTTTCTCCATCAAAACCTCGTCGCGAGGTTGACTATTGTATAGATGGT CTAAACATGCGCTTCGGCCAAACTAGCGAGTGGGCTGTACGTTCCTGATTAACTATTTGTCATGTTATTGTTCCTTGCTG CATTAATGGAAGTTTTTTCACTCATTCCACACTCTCTTCTTCATTTGGATATTGCTCAGGTTGCTTTGAAAGTCATGATT ATCTTCCATCGTGCCATGAGGGAACTTGACAAAACAGTTATGGAACAATTTGCTAGTTGTAGCAATGGAGGCTGTTTAAT TGATTTAGCAAACTTTACGGTTACTAACAAACCACCTGGTACTTGTTCTGCTCCTTCCATCATTGTCATTTGCCCCATTT TTACTACAGATAATGACCTGGAGTTTTTTGGTGTTCAGGATCAGAGGAGTATTGTAATTGGATGCAAGAATATCATTTTT ACCTTGAAGATCGCGTAAAGTGTTTCACCACAATGAACAACCATGATGTGGTGACTATTAGCGAGGCAAGTAATCCAGTT TATGTTCTTTTCTTTTCATTTGTTTTTGTGTTTGTTTGTGTGGGTGAGAAACCTTGTCTGAAATTTTGAAGTGTGTGTAA GCTATTGTGCATGCATAAGAGGAGCTTTGATGCACTGGATAAGTATTGGTACAAATATAATAGACCATGAAGTGTATTTT TTTTTCCTTTTACTGTGTTTTGTTGTTGGTGTACCTAGTTGGATTTTGTCACAGTGCTGAAGTTATTGGGAATCAGTGAA ATTTTTTCTCACTTTCTATTTCATGCATATACAGAAACATACCCAAAAGCTTAGCACTCAGGACTTGCTGGTCCAATTGC CAGCCTTACAAAGAGTTCTCTTTCGGCTTCTTCAATGCAAGGTTACCTTCATGCAGCTTGTTGATCATAATGTCTTGTTT TACTGCAACTCTGGGAAATTCAATGACTCATCAGGAAATATTCATTGTTTTCACGTTTTACAGCCGAAAGGTGCAGTTGC ATTTAATCGCTTAATTCAGTATGCCCTTTCAATGGTACGAAACATCATACTCTAGAATTTTGATCTGTAGTTTTTTTAGG CTCATTTGACCATATATTCTTTGGTGGTGTTCTTTCATCAGGTTACTGGTGAAAGTATTAAACTATATGTTGCAATAACT GTTAGAGTGGTGGAATTACTTGAAAAGGTGAATAGTTCAATACTTTGGTCAATTTTATAGGTATTTCAGCTCTTCTGTTC TTGTAGTCTCCATTTGTAGCTGTTAAAGTAACACTAACTCCTATTCTGTGACAGTTTTTTGAGATGCACCGTGATGATGC TATTAACGCCCTGAAGATTTATAAAATGTCAGGAAGCCAGGTAATAAGTGTTCAGCCTTTCATCTGCATTTTCGCGCCTT AACACTTGTAATGAATTCCAATTCAAGTTTGTGTAAGATTGTTTTGCTTTAGGCAGAGATGTTGTCCAAGTTCTTTGCGG CCTGCAAGAGCCTAGACTTTGCAAGGGGTCAGAAATTCATCAACATTAAGGAGGTACTAGAATATGATCCACACGTTGAG CGGACATATAAATTACTTTACAATACTGCTAAAAATTAGACAATATAATATTAAGGAAACTTTGACGTGTCACATTGACA TAGTATTTCCAATTGACATGTTCTGACATGTATTTTGCAGCCTCCTGCATCTTTTATAGCTACCATGGAAGAATATATTA AAGAGGCTCCTAGCACCTTAATGCTTGAATACAACGTGGTATAGATTTTTTCCTTATAAAAATGAATTATATAAATAAGT GCCGGTTAAGATTGAATCATGTTTTAATTCATATTCCAACTCTATTCTTACCAGGATGATGATGAAAAGGGAGTTAGTGC TAATGAAAGTGCAGCTTCTGTGGGCGATTTATTGAGTACGGATAACCAAAATGCAGATAGTGAAAACAAGACAGATCCTT CTCCAGAAAGTAATGAGGCTGCAGCACCTTCACAAGCAGCTGATCTTTTGGTAAGTGTGTTGTTTACTAGTTACTATTTT GAAGTCCACTTTGTTCTAATATCATGTTGTCTATCTTATTATCTTGTTTTGTTAGGGTTTGTACGACTTACTAACAGGAG CATCTGAATTTGAAGAAAATTCCCTAGCATTGGCAGTTGTCCCAGCAGGTAGATTTTATATTCTCTTCCAAAAATTTAGA TTTAAATGTCATGTACCCAAACACTATTATGACATGTTTCTTTTATGCATGTACAAGAAAATTCTGTAAATTCCAGCAAT GATGAAAATGGAGCAAGTTCAGTAACAGGTTGGGAGGTTGCACTCTTTACAGAGCCAGAAACCTCTAATGACAATGTAGT TGCAGAGAGTACCTTCACAGAACAAGAGGTAAGTTTTTTGTGCCATTTCACCTCTGCCACTGATGACTTCTAGAGCTCCT TTTTCATATACTAGCTTTGAGTCATGGGAGATTATAGCATATGGGCCCGTTTGGAATATCTTATTTTATAGCATAGACAC TATGTGAGTGTTTGAGAGAGTTTATGGCATAAATTTGAGTTTATTTTCATAAGTTATTCAAATTAGCTTATGAATAAGCT TTTATACCAACCTATAACCTATTTTGAGTTTATTTCAATAAAATTGTCAAATTAACTAGAGATATGAGAAGCCCGACATT GAGTAGAGACATGACCAAATAAGAGTTTATAATGTGTAGAACAACCCTCACATCTAAACTTGGTTTTGTGGTAAAATTAG ACCTTAACCAAATTCTAGTAGCACGCATAGAAGATGAAAAAGAGGAGTCAATAATCAATAACTGACGATTCTTGTCCATT TTAAAGCAGAATCTCTAATGCTATAAATTTATCAGTAGTTTTCACTTTTACTTTTCTTTTGTGAAGTACTTATTATAAGT TGATTCAGTGGGAGTGATACAAATATGTGCATCATTGCTAACTCTATTTGAAAAGCAGGCTGGCCAAGCTGGTAAATTGG ACTTGTCAAAACTTGACAATCTCTATGATGAGGCTATTGTTGGAATACAACAAAATGCAGCTTACAAGATTGGCCAAGTG GTTTCCAACCCTTTTGACTTTCAAGCTAGTCATGATAGCCAGTACAACATGGCAATGGCACCCTCAAATATGCAAAATGC TTCATGTGTTCCTCCTAACATGGCATATCCAATTCCATCTCAAATGTCATGCATGACCTATCAAGATTATTACATGATGC AGCAGCAACTACAACTGCAGCAACTGCAACTGCAGCATCAGCAACTGCAGCAGCAGCAGCAGCAGGAAGCATCCATGATG AACAAAAAATCGACCAACCCATTTGAACTTGATGAAGCAAATATTTTGCCATCACATCCAAATCAGAGTACTTCACCCGG TTTAAATGTAGGAGACTAATGGAAAGATGCTTACTTACCTGGCTGTACATTAGGAACCATGGAAGTAGAAGCAACTAGTA AAGTTACAGAAAAATGGAGTAAAACCTGTTTCTTTCTCTTGCTCTGACACTTGTGTGAGTGCATGGGTACATGTGAAGTA CAGGGAAGCCAAATCTTCCAATTTTGGGATAACATTGTGCTCATCATGTATACTAATTGTAATCAAATATGTAAGTATCT AATCAATAGTTAATGTTTTAAAAACATATTTTAATTTAAAATGAAATAGTTAATTGAAGAACTAACTAAGGCCTAGTTTG GAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0199000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGAAGAAGGTTAAATCCCATGGCGAATATAAGTTGTTGGATGCTGCAATTCTGAAGGCAACAAACTCAGATAATGC ATTGCCAAAGGAAAAGCACATTCGGACCATTTTTCAATCACTTTCTCCATCAAAACCTCGTCGCGAGGTTGACTATTGTA TAGATGGTCTAAACATGCGCTTCGGCCAAACTAGCGAGTGGGCTGTTGCTTTGAAAGTCATGATTATCTTCCATCGTGCC ATGAGGGAACTTGACAAAACAGTTATGGAACAATTTGCTAGTTGTAGCAATGGAGGCTGTTTAATTGATTTAGCAAACTT TACGGTTACTAACAAACCACCTGGATCAGAGGAGTATTGTAATTGGATGCAAGAATATCATTTTTACCTTGAAGATCGCG TAAAGTGTTTCACCACAATGAACAACCATGATGTGGTGACTATTAGCGAGAAACATACCCAAAAGCTTAGCACTCAGGAC TTGCTGGTCCAATTGCCAGCCTTACAAAGAGTTCTCTTTCGGCTTCTTCAATGCAAGCCGAAAGGTGCAGTTGCATTTAA TCGCTTAATTCAGTATGCCCTTTCAATGGTTACTGGTGAAAGTATTAAACTATATGTTGCAATAACTGTTAGAGTGGTGG AATTACTTGAAAAGTTTTTTGAGATGCACCGTGATGATGCTATTAACGCCCTGAAGATTTATAAAATGTCAGGAAGCCAG GCAGAGATGTTGTCCAAGTTCTTTGCGGCCTGCAAGAGCCTAGACTTTGCAAGGGGTCAGAAATTCATCAACATTAAGGA GCCTCCTGCATCTTTTATAGCTACCATGGAAGAATATATTAAAGAGGCTCCTAGCACCTTAATGCTTGAATACAACGTGG ATGATGATGAAAAGGGAGTTAGTGCTAATGAAAGTGCAGCTTCTGTGGGCGATTTATTGAGTACGGATAACCAAAATGCA GATAGTGAAAACAAGACAGATCCTTCTCCAGAAAGTAATGAGGCTGCAGCACCTTCACAAGCAGCTGATCTTTTGGGTTT GTACGACTTACTAACAGGAGCATCTGAATTTGAAGAAAATTCCCTAGCATTGGCAGTTGTCCCAGCAGAAAATTCTGTAA ATTCCAGCAATGATGAAAATGGAGCAAGTTCAGTAACAGGTTGGGAGGTTGCACTCTTTACAGAGCCAGAAACCTCTAAT GACAATGTAGTTGCAGAGAGTACCTTCACAGAACAAGAGGCTGGCCAAGCTGGTAAATTGGACTTGTCAAAACTTGACAA TCTCTATGATGAGGCTATTGTTGGAATACAACAAAATGCAGCTTACAAGATTGGCCAAGTGGTTTCCAACCCTTTTGACT TTCAAGCTAGTCATGATAGCCAGTACAACATGGCAATGGCACCCTCAAATATGCAAAATGCTTCATGTGTTCCTCCTAAC ATGGCATATCCAATTCCATCTCAAATGTCATGCATGACCTATCAAGATTATTACATGATGCAGCAGCAACTACAACTGCA GCAACTGCAACTGCAGCATCAGCAACTGCAGCAGCAGCAGCAGCAGGAAGCATCCATGATGAACAAAAAATCGACCAACC CATTTGAACTTGATGAAGCAAATATTTTGCCATCACATCCAAATCAGAGTACTTCACCCGGTTTAAATGTAGGAGACTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0199000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKKKVKSHGEYKLLDAAILKATNSDNALPKEKHIRTIFQSLSPSKPRREVDYCIDGLNMRFGQTSEWAVALKVMIIFHRA MRELDKTVMEQFASCSNGGCLIDLANFTVTNKPPGSEEYCNWMQEYHFYLEDRVKCFTTMNNHDVVTISEKHTQKLSTQD LLVQLPALQRVLFRLLQCKPKGAVAFNRLIQYALSMVTGESIKLYVAITVRVVELLEKFFEMHRDDAINALKIYKMSGSQ AEMLSKFFAACKSLDFARGQKFINIKEPPASFIATMEEYIKEAPSTLMLEYNVDDDEKGVSANESAASVGDLLSTDNQNA DSENKTDPSPESNEAAAPSQAADLLGLYDLLTGASEFEENSLALAVVPAENSVNSSNDENGASSVTGWEVALFTEPETSN DNVVAESTFTEQEAGQAGKLDLSKLDNLYDEAIVGIQQNAAYKIGQVVSNPFDFQASHDSQYNMAMAPSNMQNASCVPPN MAYPIPSQMSCMTYQDYYMMQQQLQLQQLQLQHQQLQQQQQQEASMMNKKSTNPFELDEANILPSHPNQSTSPGLNVGD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.25.40.90
2 145 144 2.1E-29
IPR008942
PANTHER
PTHR22951:SF65
3 542 540 9.7E-209 –
PANTHER
PTHR22951
3 542 540 9.7E-209 –
ProSiteProfiles
PS50942
6 144 139 17.841
IPR013809
SMART
SM00273
12 144 133 0.0012
IPR013809
CDD
cd03564
14 137 124 2.53287E-29 –
Pfam
PF07651
14 282 269 3.1E-58
IPR011417
SUPERFAMILY
SSF48464
14 140 127 4.58E-16
IPR008942
Gene3D
G3DSA:1.20.58.150
147 294 148 3.4E-34
IPR014712
SUPERFAMILY
SSF89009
152 282 131 7.85E-34 –
MobiDBLite
mobidb-lite
300 339 40 - –
MobiDBLite
mobidb-lite
307 336 30 - –
Coils
Coil
499 526 28 - –
MobiDBLite
mobidb-lite
520 559 40 - –
MobiDBLite
mobidb-lite
520 535 16 - –
MobiDBLite
mobidb-lite
543 559 17 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005543
Molecular function Phospholipid binding Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester.
Subterm of
GO:0005545
Molecular function 1-phosphatidylinositol binding Interacting selectively and non-covalently with phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol.
Subterm of
GO:0030136
Cellular component Clathrin-coated vesicle A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes.
Subterm of
GO:0030276
Molecular function Clathrin binding Interacting selectively and non-covalently with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles.
Subterm of
GO:0048268
Biological process Clathrin coat assembly The process that results in the assembly of clathrin triskelia into the ordered structure known as a clathrin cage.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0199000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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