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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0203700 |
| Transcript ID | LotjaGi6g1v0203700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-3-methyladenine glycosylase, putative; TAIR: AT5G57970.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|Q7VG78|GUAA_HELHP Probable GMP synthase [glutamine]-hydrolyzing]; TrEMBL-Plants: tr|K7KWJ8|K7KWJ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0203700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50109703..50114892) extracted from Lotus japonicus Gifu genome v1.2.
AAAACATACACATGTCAATGAACAAGGAACATCCAATAAACATGTAACGGTGACAGCCGGTAAATCTAATCTCTCTGTCT CTCTCTCTCTCTTGGATTCTCTCACTTCATCAATCAACTACGATTTTACTTTCTTTTTTATTTATTATTTTTTTCAAAAA ATATCTATAACTTCATTGTTGTTGTTGATGGTTTCTTAGTTCAACCCTCTCAGAAGACACCCTTTTACCCCGCATTTTCC ATAGCTTTCTCTACTGTTTTCTGGGAAAATATGAACCAAGCATGAGAACTGCAAAGAATGTGTCAGCTTTATTTTTTTAC TCCATGTGGGGCAGCTGAAAATTTTTGAGCTTTGATTTGTGACACATGCTTTTTCCCTTTTGAGGTTGCAGTGCAGAGGC TCTCTATCTCGTTTTCCACAATGCAGAATGGAATCTCAGAGTTTCGAGGCTCTGACTTTCTGTGAAGCTAGCTCGGTTTT GAAAACTTTCAGGAACATGAAACACAACCCTTTATTGGCTCCATTTTAAAGCCTCTAACTTTTTGGTCAAAAGGTGAGCC CATTTTTCTGACTCTTGATCGTGTCATGTTGGTAATAGCCAAATCCTATTATTTGATTCAGCTGGTTTTTCTGGGTTTTG AGCTGATTTAAAGTTCTGGGGTTTGAGAGGAATGAGGGTTTGAGTCTTCTAGTTACTATTGACTTTCAAAGTTGGGATTT TTAGTGTAGTTGGGTGATTTGAGAGTTTTAAGTGACACCCCAATACAACTTTCACATCAATTGGTGCATTTTGGAGCTAA AGTATTGAGATCTGTTTTGGGAAGTCAAGTCACTGTGTACTTGGTGTTTCCCAAAGTTTGAGATTGATTCTGGTTAGTGT GGTTTCTTTAGCCTCCAACTAGTGAAAAAAGGAATAAGGCTTTTAATGAATTTTATAGGCAGTTTGATGGATAATTAGAG CTTGAAGATTCCACTTGGTGAGATATTTAAGAGGTTGAGAAGTCAAAGGTGTAGTGTTTTTTCTTATCAATGTCTGGAGC TCCCAGATTGAGGTCTATGAATGTTGCTGATTCAGAGGCAAGGCCTGTGCTTGGACCAGCTGGAAACAAGACAGGGTCTT TGAGTTCAAGGAAATCAGCTTCAAAGCCATTGAGGAAGGTTGATAAATTGCTGGATGAGGCTGCATCAGCAGTCAAAGAG AAGAAACCCCATCAAGTGCTGTCTTCAGTTGTTTCCTCCTCTCCCAAGTCATATCCTGCTGCCAGGGTTTCTTCTCTGCT CAGCCGGCACGAGCAGTTACTACATTCTAATTTATCTCTCAATGCTTCATGTTCATCTGATGCCTCTACAGATTCATTTC ATAGTCGAGCATCTACTGGAAGATTGACACGGTCCTATAGCCTAGGTACCCGAAGGAAACCGTATGTGTCGAAGCCGAGA AGTGTTGCTTCTGATGGGGTGTTAGAATCTCCCCCTGATGCTTCACAATCCAAGAAGAGGTGTGCCTGGGTCACTCCCAA TACTGGTTTGTTCTTCTTCTTTGAATTTTCCTAAATTATTCAGGAAACATTAGTATGGATTGTGAAATAGCATGATGTGA ATGTATTTATCAGTGATTATACTATGCTTAAGCCTTTGTCATATACTTCAGTTTCTTTTGGATGTTGAATTAGTCAGGAG AATGAGAGTACATTGTAGTTCATTCCAAGTTTGACTTGCATTATTAGATATTTTTACATGTTTTTGAGCTGATCTTGTCA ATAATTTGATTCTCATTTTCAACATATAACATTCTTGAATATTTAGGGTTGCATTGACTATATATCTCATTGGGATAGCA GAGTATGTGTTTCCATATAAATTGTCAAATTAGCATGACCAGGGGGTGCTTTTGCTACAAATATTCGTGTATGCTATGGA TTTCTCACACAAATATAATAAAATATGTTTTGGAATTGGATGCATACCTTTTTACATGGATTTTAATTGGTGTTTTTCCT TGTTGAAAAGAAAATTGGAAAATCTTAGTGTCTACATGATATGAACCTGATATGCTGATGAGTGTTGAGATAACTGCACA GGAGCCAGCTATAACTTTCCTTGAAATTCCTCCACTACACGTCTACACTTGTTGAGTTTTAAGTTCTGAATTATATATCT GGTATTTTTCAGTTTTGTTTTCTGACCAAGTTCACTTTTTTAATACCAGAACCATGTTATGCTACTTTCCACGATGAAGA ATGGGGAGTTCCGGTACATGATGACAAGTATGTGTTACACTGAAATAATCTTTTTTGCTGGTTGTAAAAGGAATATTCAT TCTCTATTTTAGTTGCCATGCTTGAACATTTTTAATCTCATGCAGGAAACTATTTGAGCTACTTGTACTTTCGATTGCTC TGGCTGAACTTAGTTGGCCAGTCATTCTAAGCAAAAGGCATAGTTTTAGGTATTCTTCTCTGTATAAACTCTTTAGTTCT TCTCTCTTACATAGTCTCAAATCTTTACTGACCAGCTACTTGATGACTTTATTCTCAGCTCTAGCCTATTATGTTTGCAT CATTTTTTAATAAGGTTCTTTGCAGGGAAGCTTTTGCAGACTTTGATCCGGTTGCTGTGTCAAAGTTGAATGAGAAGAAG ATGATGGCACCAGGAACAGTTGCGAGCTCCCTACTTTCTGAGCTTAAATTACGTGCTGTGATCGAGAATGCACGTCAAAT ATCAAAGGTAAGTTAATTTTCACTTGAATTATGCAACCGTCTAAATGTGCAAACTCTTGGGTTGTTCATCAAAATTGTTT ATTACTTCCTGTTAGAATATAATATAAAACCATTAAAGTGGCCCTTACCCAACAGCTTAAGCTTTTGGGATTAAGTGGTT ATTTGACATGGTATCAGAGCCTCTATGGCCGAGAGGTCTAGAGTTCGATCATTGCTCCCCTCACTTTCTAATTAAAAAGT GGAATTTAATTAAGCACATGGTAGGTGGGCCTGTGCAGTTATCCACGCTTCAAGCCCAAAGAGCTCTTGCGTGAGGGGGC GTGTCAGAATATAATATAAAACCATTAAAGTGGTCCTTACCCAACAGCTTAAGCTTTTGGGATTAAGTGGTTATTTGACA CTTCCTGTACCCTTGGAGACAACCATGGGATTCAAGTTTTGCATTTTGCAGCATTTCACTGCCATGAGCCATCTCTAAAT TATTTCTCCTGTTTTATGGGGCCCCTGGGGTACCTGCATGGTTATCCTGTTTGCTTTTGTTTGTTAGGATGGTCAAATAC TTTATTCACTGCAAGAAGATAATAGCCTTTTTTTAAAACAAAATTGCTTCATTTTCTGCATTGATCTTTGGAAGAATTAC CAAAACAGGAAATCAAGTCATAACTATTCCAATAGAGGGAAACGGAAAGCATTAACTGTCAATGTGAAACTGAATGATCC TTCTTACTGTGTCATATTTCACAAAATGTGCACCAACTGTTTATATGACTGGTGGTATTATATCTGCAAACTACTTTAAA CTTTGGTGGTTTTATGAGAGTACATCTCTCTCTCTTAGCCATGATAAACATAAAATATCATTTTCTCCTTCCTATGTAAG TGGCTTTTCCCTTGTACCGCTGTACTTGTATTTGGCACAATAGTGGGGCCACTTGAACTTAAATGCAGTAACATTAGCAG TTTGTGCATAGTTTACAAAACTAATTACATGAGTAGAATCAATCATGTCTGTTTTGGAAATTGACACATTTTCTTCCCCT TTTTAAGAAAGATTTGAAGTTATTTTTCCTACCCATAGAACTTTGACTTGTTGAGATGTTTTGAGTTTTGCTCAATCAAT CGGATGACTGTCTAAACCTTCCATTTATTGTTCTTGTCTCCCTGATGAACAATTGAATGACATACTGCTGCTGTTTATTG ATAATTTGATCAGGTAGGTTAGGTAGCAAATATCAATAGGATGGTGGTCCTGATCTTTATTCAATTTGCATGACCCCATA TGGAACAGAATATGATTTTAATCTTCTGTACAAAGTGAGCTTGTAGTATCTAATTTATAACAATGATGTGCTACTCAATT ATTTGGATTCTTTATGCTGCCAGCTCGCTTTGGCTAAGCTTGTACGTCTCAACTCATGCAGTGCATGTTTGGAAAACCTT TTATAATTGACACTGAAGTCAGAATCAATTCTTGGGAGTAACTTATGAGAATAGCTTCTGGATTTCATAATTGATTCTGA TGAAAGAGAAGCTTATCCAAACATGCTAGTGAACTTGAAGCTTTTTCCAAACATCAATCAGCACTAGAATGCCCTTTCTC ACCTAGTAGCCATTATTGCAGATTGCAGAATTTACATTATTGCTATAGCTTTAATTATCATGGCAACTAACCTTTTGCAG GATTTTCCTGGTGCCAGGTCATAGATGAGTTTGGGTCTTTTGACAAGTACATTTGGAGTTTTGTGAACCATAAGCCAATA GTTAACAGGTTCCGCTATCCAAGACAGGTCCCTGTGAAAACTCCAAAGGCAGATGTCATCAGCAAAGACCTGGTGAGAAG AGGTTTCCGTGGCGTTGGCCCCACGGTGATATATTCTTTCATGCAGGTTGCTGGTTTCACCAATGACCATCTCATGAGCT GCTTCAGATTCCCGGAGTGTATTGCTGCAGCTGAAGGAAAGGAAGGGAATGGCATCATGGATAATATTAACTCTGAACAA AAGGAGGGTTGTGATAACATGATGGAATCCAATCTGTCTATTGCCATTGATGAATTGAGTTTCTCCTCTGAATCCTAGTT CAACAGTGTTGCTAGTGTACTTGTCTCTTAGCCTTGGATTAAGTGTGATGATGGAGGGGAATTTGTGTAAAAATCTCATG CATTATTCCCTAAACATGATGGATTCTTAGATTGTAGGTTACTAAAACCAGTTAACTGGGTATCCTTCTGCTGTACTAAG CTTCTGCATTACCAATTGGTGTACAATTTTTTGTACAGTTAAAAAGATTAGTGATTAGTATTTTCTTTGAAGCCAATGGC AGCTGGCAATAGATAACCATTCTAGTTCTTGTTTTGTGTCACCATCTCGTTACAGAAAATAAAAATGGTAAGTAGACACT CATAGTGGCGCCGATGTCCAAAATTACTAGTGTGATAAAAGAAGAGAACAGAGAAAAGTGATAGATATAA
CDS sequence (LotjaGi6g1v0203700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGGAGCTCCCAGATTGAGGTCTATGAATGTTGCTGATTCAGAGGCAAGGCCTGTGCTTGGACCAGCTGGAAACAA GACAGGGTCTTTGAGTTCAAGGAAATCAGCTTCAAAGCCATTGAGGAAGGTTGATAAATTGCTGGATGAGGCTGCATCAG CAGTCAAAGAGAAGAAACCCCATCAAGTGCTGTCTTCAGTTGTTTCCTCCTCTCCCAAGTCATATCCTGCTGCCAGGGTT TCTTCTCTGCTCAGCCGGCACGAGCAGTTACTACATTCTAATTTATCTCTCAATGCTTCATGTTCATCTGATGCCTCTAC AGATTCATTTCATAGTCGAGCATCTACTGGAAGATTGACACGGTCCTATAGCCTAGGTACCCGAAGGAAACCGTATGTGT CGAAGCCGAGAAGTGTTGCTTCTGATGGGGTGTTAGAATCTCCCCCTGATGCTTCACAATCCAAGAAGAGGTGTGCCTGG GTCACTCCCAATACTGAACCATGTTATGCTACTTTCCACGATGAAGAATGGGGAGTTCCGGTACATGATGACAAGAAACT ATTTGAGCTACTTGTACTTTCGATTGCTCTGGCTGAACTTAGTTGGCCAGTCATTCTAAGCAAAAGGCATAGTTTTAGGG AAGCTTTTGCAGACTTTGATCCGGTTGCTGTGTCAAAGTTGAATGAGAAGAAGATGATGGCACCAGGAACAGTTGCGAGC TCCCTACTTTCTGAGCTTAAATTACGTGCTGTGATCGAGAATGCACGTCAAATATCAAAGGTCATAGATGAGTTTGGGTC TTTTGACAAGTACATTTGGAGTTTTGTGAACCATAAGCCAATAGTTAACAGGTTCCGCTATCCAAGACAGGTCCCTGTGA AAACTCCAAAGGCAGATGTCATCAGCAAAGACCTGGTGAGAAGAGGTTTCCGTGGCGTTGGCCCCACGGTGATATATTCT TTCATGCAGGTTGCTGGTTTCACCAATGACCATCTCATGAGCTGCTTCAGATTCCCGGAGTGTATTGCTGCAGCTGAAGG AAAGGAAGGGAATGGCATCATGGATAATATTAACTCTGAACAAAAGGAGGGTTGTGATAACATGATGGAATCCAATCTGT CTATTGCCATTGATGAATTGAGTTTCTCCTCTGAATCCTAG
Protein sequence (LotjaGi6g1v0203700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGAPRLRSMNVADSEARPVLGPAGNKTGSLSSRKSASKPLRKVDKLLDEAASAVKEKKPHQVLSSVVSSSPKSYPAARV SSLLSRHEQLLHSNLSLNASCSSDASTDSFHSRASTGRLTRSYSLGTRRKPYVSKPRSVASDGVLESPPDASQSKKRCAW VTPNTEPCYATFHDEEWGVPVHDDKKLFELLVLSIALAELSWPVILSKRHSFREAFADFDPVAVSKLNEKKMMAPGTVAS SLLSELKLRAVIENARQISKVIDEFGSFDKYIWSFVNHKPIVNRFRYPRQVPVKTPKADVISKDLVRRGFRGVGPTVIYS FMQVAGFTNDHLMSCFRFPECIAAAEGKEGNGIMDNINSEQKEGCDNMMESNLSIAIDELSFSSES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 378 | 378 | 9.6E-168 | – | |
| PANTHER | 1 | 378 | 378 | 9.6E-168 | – | |
| MobiDBLite | 1 | 73 | 73 | - | – | |
| MobiDBLite | 38 | 57 | 20 | - | – | |
| MobiDBLite | 133 | 152 | 20 | - | – | |
| Gene3D | 155 | 341 | 187 | 1.8E-69 | – | |
| SUPERFAMILY | 156 | 342 | 187 | 3.77E-67 | ||
| Pfam | 164 | 337 | 174 | 7.6E-63 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Biological process | Base-excision repair | In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. | ||
| Molecular function | DNA-3-methyladenine glycosylase activity | Catalysis of the reaction: DNA containing 3-methyladenine + H2O = DNA with abasic site + 3-methyladenine. This reaction is the hydrolysis of DNA by cleavage of the N-C1' glycosidic bond between the damaged DNA 3-methyladenine and the deoxyribose sugar to remove the 3-methyladenine, leaving an abasic site. |
Expression pattern of LotjaGi6g1v0203700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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