Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0211500 |
| Transcript ID | LotjaGi6g1v0211500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290, chloroplastic; TrEMBL-Plants: tr|A0A0B2RTK3|A0A0B2RTK3_GLYSO Pentatricopeptide repeat-containing protein; Found in the gene: LotjaGi6g1v0211500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50872315..50874851) extracted from Lotus japonicus Gifu genome v1.2.
GTACGATGTTGTTTAGATTCTTCTGCCTGACATGCTCTGCACTCACAATTTGTTTCATCTCCTTAACATTCGCAAAATCC CCTACATTGTTGCACCCTTCCAGACAAGGTTTTTCACCACTTCCTCTTTGTTAGATCTCTGCACCAAACCTCAACACCTT CAACAAATCCATGCCAGGTTCTTCCTCCATGGCCTCCACCAAAACTCATCCCTTAGCTCCAAACTCATGGATTGTTATAC CAAGTTTGGACTCCCAGGTTTATCCCAGAAAGTCTTCTACTTCACTGAAAACCCTGATTCAGTTATATACAGTGCAATCT TAAGAAACTTGTCTCAGTTTGGTGAACATGAGAAGACCCTCTTTTTGTATAAAGAAATGGTTGAGAAATCCATGTACCCA GATGAAGAGAGTTGCTCATTTGTTTTGAGGTCTTGCTTTTCTGTGTCTCATGAACAAGGGAAGATGGTTCACGCGCAGAT AGTGAAACTGGGTATGGATGCATTTGACTTGGTGAGAAACTGTTTGGTAGAGCTGTATGAAAAAAATGGTTTTCTGAATG CACATGAACCACTTGAAGGAATGTCTGTGACAGAATTGGCTTATTGGAATAACATGATTTCTCAGGCTTTTGAGAGTGGG AAAATGGAGGAATGCTTTCAGCTCTTTTCTAGGATGAGAAAAGAGAACATCCAACCTAATTCAATTACTGTGATTAACTT GTTAAGATCAACTGTTGATTTGCACTTGTTGAAGATAGGACAAGCCCTCCACTCTCTGATTATTGTGAGCAACTTGTGTG GAGAATTAACTGTGAATACTGCATTGTTATCAATGTATGTGAAGTTGGGTAGTCTAAAAGATGCAAGACTGATGTTTGAG AAAATGCCTAGGAATGACCTTGTAGTTTGGAACATAATGGTTTCAGCATATGCGGGGAATGGGTGCCCTAAGGAATCCTT AGAGCTTGTATATTGTATGGTTAGATCAGGGGTTAGACCTGACATGTTCACGGCAATCCCTGCAATTTCTTCAATAACAC AGTTAAAACATACTGAGTGGGGAAAGCAAATGCATGCTCATGTGATAAGAAATGGTTCTGATTATCAGGTATCTGTTCAT AATGCTCTTATTGACATGTATTCTGCATGTAACGGCTTAAATTCGGCACGGAGGATTTTTGACTTGATAACGGACAAGAC TGTGGTCTCATGGAGTGCAATGATCAAAGCACATGCAGTTCATGACCAGTGTCTTGAGGCTCTATCTCTATTCATAGAAA TGAAGTTATGTGGTACTAGAGTTGACTTCATTATAGTGATTAACATCTTGCCTACATTTGCAAAGATTGGAGCATTGCAT TATGTAAGATACTTACATGGGTATTCACTGAAAGCAAGCCTTGATTCACTCAAATCCCTTGAGACATCACTTCTGGCTAG CTACGCGAAATGTGGATGCATAGAGATGGCAAGAAAGCTTTTTGATGAAGGCAAAAGCAGCCATAAAGATATAATTGCAT GGAACTCCATGATCAGTGCTTATTCCAAACATGGAGAGTGGTTTCAATGTTTTGAGCTTTACAACCAAATGAAACTATCA AATGTTAAACCGGACCAGGTTACGTTTCTTGGGCTGCTCACGGCTTGTGTCAATTCAGGCCTTGTTGATAAAGGGAAAGA GATTTTCAAGGAGATGGTGGACCTATATGGTTACCAACCTAGTCAGGAGCACCATGCCTGTATGGTTGATCTACTAGGAC GCGCTGGACAAATTGATGAAGCAAGCAAAATAATCGAAACTGTTCCCTTGAATTCAGATGCCAGAGTTTATGGTCCCTTG TTGAGTGCCTGTAAGATGCACTCAGATCCTCGTTTAGCAGAAGTTGCAGCTCAGAAGCTCATAAATATGGAGCCTAAAAA TGCTGGAAACTATGTGTTACTCTCCAATATATATGCTGCAGCAGGAAAGTGGGACAAGGTTGCTAAAATGAGGAGTTTTC TCAGAGATAGAGGACTAAAGAAAACACCAGGTTGTAGCTGGCTCGAGTCAAATGGACAAGTACACGAGTTTCGTGTTGCA GATCAATCTCATCCAAGATCGGTGGATATATATTCGATATTGAAAGTAATGGAGTTGGAAGCAGGGGATCTGGAGGATGA TCTTGAACTCTTTGAGCCTCATATCATTTAAGGGATGTGAATTGTAAATGAATCTACTCAAGAACCTTTTAAGACATGGC ATCTGATAAACCACATTCACCACTTAATTCCTAATTTCCGATGATAGGTCGAAAGGAAAAGTACACGGCCGTAGACAAAC GGAACACACATCTTAAATCTCTTTATCAAACTATCAGCAACAGATACCATTGTGTTTGGCGGAAGGATTATTGCCTGGAA TAGCAGTTTTGTCATGTGAACAGCCCCTGTATGCAAAGTCGGGAATATGTTTACTCTAAATAGTGAAACCAAACTGACAC TTGTTATTCTTACTTTATAAAATTTAATTGTTTGAAACATTCATGAATCAAGGGTGT
CDS sequence (LotjaGi6g1v0211500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCTGCACTCACAATTTGTTTCATCTCCTTAACATTCGCAAAATCCCCTACATTGTTGCACCCTTCCAGACAAGGTT TTTCACCACTTCCTCTTTGTTAGATCTCTGCACCAAACCTCAACACCTTCAACAAATCCATGCCAGGTTCTTCCTCCATG GCCTCCACCAAAACTCATCCCTTAGCTCCAAACTCATGGATTGTTATACCAAGTTTGGACTCCCAGGTTTATCCCAGAAA GTCTTCTACTTCACTGAAAACCCTGATTCAGTTATATACAGTGCAATCTTAAGAAACTTGTCTCAGTTTGGTGAACATGA GAAGACCCTCTTTTTGTATAAAGAAATGGTTGAGAAATCCATGTACCCAGATGAAGAGAGTTGCTCATTTGTTTTGAGGT CTTGCTTTTCTGTGTCTCATGAACAAGGGAAGATGGTTCACGCGCAGATAGTGAAACTGGGTATGGATGCATTTGACTTG GTGAGAAACTGTTTGGTAGAGCTGTATGAAAAAAATGGTTTTCTGAATGCACATGAACCACTTGAAGGAATGTCTGTGAC AGAATTGGCTTATTGGAATAACATGATTTCTCAGGCTTTTGAGAGTGGGAAAATGGAGGAATGCTTTCAGCTCTTTTCTA GGATGAGAAAAGAGAACATCCAACCTAATTCAATTACTGTGATTAACTTGTTAAGATCAACTGTTGATTTGCACTTGTTG AAGATAGGACAAGCCCTCCACTCTCTGATTATTGTGAGCAACTTGTGTGGAGAATTAACTGTGAATACTGCATTGTTATC AATGTATGTGAAGTTGGGTAGTCTAAAAGATGCAAGACTGATGTTTGAGAAAATGCCTAGGAATGACCTTGTAGTTTGGA ACATAATGGTTTCAGCATATGCGGGGAATGGGTGCCCTAAGGAATCCTTAGAGCTTGTATATTGTATGGTTAGATCAGGG GTTAGACCTGACATGTTCACGGCAATCCCTGCAATTTCTTCAATAACACAGTTAAAACATACTGAGTGGGGAAAGCAAAT GCATGCTCATGTGATAAGAAATGGTTCTGATTATCAGGTATCTGTTCATAATGCTCTTATTGACATGTATTCTGCATGTA ACGGCTTAAATTCGGCACGGAGGATTTTTGACTTGATAACGGACAAGACTGTGGTCTCATGGAGTGCAATGATCAAAGCA CATGCAGTTCATGACCAGTGTCTTGAGGCTCTATCTCTATTCATAGAAATGAAGTTATGTGGTACTAGAGTTGACTTCAT TATAGTGATTAACATCTTGCCTACATTTGCAAAGATTGGAGCATTGCATTATGTAAGATACTTACATGGGTATTCACTGA AAGCAAGCCTTGATTCACTCAAATCCCTTGAGACATCACTTCTGGCTAGCTACGCGAAATGTGGATGCATAGAGATGGCA AGAAAGCTTTTTGATGAAGGCAAAAGCAGCCATAAAGATATAATTGCATGGAACTCCATGATCAGTGCTTATTCCAAACA TGGAGAGTGGTTTCAATGTTTTGAGCTTTACAACCAAATGAAACTATCAAATGTTAAACCGGACCAGGTTACGTTTCTTG GGCTGCTCACGGCTTGTGTCAATTCAGGCCTTGTTGATAAAGGGAAAGAGATTTTCAAGGAGATGGTGGACCTATATGGT TACCAACCTAGTCAGGAGCACCATGCCTGTATGGTTGATCTACTAGGACGCGCTGGACAAATTGATGAAGCAAGCAAAAT AATCGAAACTGTTCCCTTGAATTCAGATGCCAGAGTTTATGGTCCCTTGTTGAGTGCCTGTAAGATGCACTCAGATCCTC GTTTAGCAGAAGTTGCAGCTCAGAAGCTCATAAATATGGAGCCTAAAAATGCTGGAAACTATGTGTTACTCTCCAATATA TATGCTGCAGCAGGAAAGTGGGACAAGGTTGCTAAAATGAGGAGTTTTCTCAGAGATAGAGGACTAAAGAAAACACCAGG TTGTAGCTGGCTCGAGTCAAATGGACAAGTACACGAGTTTCGTGTTGCAGATCAATCTCATCCAAGATCGGTGGATATAT ATTCGATATTGAAAGTAATGGAGTTGGAAGCAGGGGATCTGGAGGATGATCTTGAACTCTTTGAGCCTCATATCATTTAA
Protein sequence (LotjaGi6g1v0211500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLCTHNLFHLLNIRKIPYIVAPFQTRFFTTSSLLDLCTKPQHLQQIHARFFLHGLHQNSSLSSKLMDCYTKFGLPGLSQK VFYFTENPDSVIYSAILRNLSQFGEHEKTLFLYKEMVEKSMYPDEESCSFVLRSCFSVSHEQGKMVHAQIVKLGMDAFDL VRNCLVELYEKNGFLNAHEPLEGMSVTELAYWNNMISQAFESGKMEECFQLFSRMRKENIQPNSITVINLLRSTVDLHLL KIGQALHSLIIVSNLCGELTVNTALLSMYVKLGSLKDARLMFEKMPRNDLVVWNIMVSAYAGNGCPKESLELVYCMVRSG VRPDMFTAIPAISSITQLKHTEWGKQMHAHVIRNGSDYQVSVHNALIDMYSACNGLNSARRIFDLITDKTVVSWSAMIKA HAVHDQCLEALSLFIEMKLCGTRVDFIIVINILPTFAKIGALHYVRYLHGYSLKASLDSLKSLETSLLASYAKCGCIEMA RKLFDEGKSSHKDIIAWNSMISAYSKHGEWFQCFELYNQMKLSNVKPDQVTFLGLLTACVNSGLVDKGKEIFKEMVDLYG YQPSQEHHACMVDLLGRAGQIDEASKIIETVPLNSDARVYGPLLSACKMHSDPRLAEVAAQKLINMEPKNAGNYVLLSNI YAAAGKWDKVAKMRSFLRDRGLKKTPGCSWLESNGQVHEFRVADQSHPRSVDIYSILKVMELEAGDLEDDLELFEPHII
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 135 | 127 | 8.6E-113 | – | |
| Gene3D | 22 | 180 | 159 | 5.5E-11 | ||
| ProSiteProfiles | 89 | 123 | 35 | 9.975 | ||
| TIGRFAM | 91 | 125 | 35 | 1.6E-4 | ||
| Pfam | 91 | 119 | 29 | 0.088 | ||
| PANTHER | 128 | 245 | 118 | 8.6E-113 | – | |
| Gene3D | 188 | 342 | 155 | 8.2E-23 | ||
| ProSiteProfiles | 188 | 222 | 35 | 10.128 | ||
| TIGRFAM | 192 | 223 | 32 | 1.8E-5 | ||
| Pfam | 192 | 232 | 41 | 9.5E-9 | ||
| PANTHER | 242 | 336 | 95 | 8.6E-113 | – | |
| ProSiteProfiles | 258 | 288 | 31 | 7.191 | ||
| Pfam | 263 | 289 | 27 | 0.011 | ||
| TIGRFAM | 263 | 291 | 29 | 0.0026 | ||
| SUPERFAMILY | 264 | 653 | 390 | 5.69E-7 | ||
| ProSiteProfiles | 289 | 323 | 35 | 11.4 | ||
| Pfam | 291 | 321 | 31 | 9.9E-6 | ||
| TIGRFAM | 291 | 324 | 34 | 1.8E-4 | ||
| PANTHER | 341 | 441 | 101 | 8.6E-113 | – | |
| ProSiteProfiles | 359 | 389 | 31 | 6.226 | ||
| ProSiteProfiles | 390 | 424 | 35 | 8.298 | ||
| Pfam | 392 | 421 | 30 | 1.0E-5 | ||
| PANTHER | 445 | 663 | 219 | 8.6E-113 | – | |
| ProSiteProfiles | 460 | 490 | 31 | 5.766 | ||
| Gene3D | 462 | 691 | 230 | 2.7E-36 | ||
| Pfam | 465 | 488 | 24 | 0.0067 | ||
| Pfam | 492 | 540 | 49 | 2.2E-12 | ||
| ProSiteProfiles | 493 | 527 | 35 | 12.2 | ||
| TIGRFAM | 496 | 528 | 33 | 2.4E-8 | ||
| ProSiteProfiles | 528 | 558 | 31 | 8.473 | ||
| TIGRFAM | 530 | 564 | 35 | 0.0011 | ||
| ProSiteProfiles | 564 | 594 | 31 | 5.689 | ||
| ProSiteProfiles | 630 | 664 | 35 | 7.191 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0211500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…