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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0214200 |
| Transcript ID | LotjaGi6g1v0214200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G03510.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LR72|PPR7_ARATH Putative pentatricopeptide repeat-containing protein At1g03510; TrEMBL-Plants: tr|A0A072VJ34|A0A072VJ34_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi6g1v0214200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:51311340..51313434) extracted from Lotus japonicus Gifu genome v1.2.
CTCAATTCCCTTCAGCAACCCATTCACGGTTGCTTTATTTCACAAAGCTCATAACCTCCCACGTCAACCAATCCCGTCAC GACCAAGCCCTCACCGTCTTCCACCACATACATTCCACCCTCACTCTCCCCCTCGACCCTCACGTCTTCTCCCTCGTCCT CAAATCATGCACCGCCCTCCGCCGCCCCCTCCTCGGCGCCGCCATCCACGCCCACGCCGCCAAATCCTCCTTCCTCTCCA ACCCCTTCATTGCCTCCGCTCTCATCAACCTCTACGGCCATTGTCTCTCCCTCACCTCCGCACGCCACCTGTTTGATGAA ATTCCCCACCGAAATGACGTCGTCTGGAACGCCATGATCTCGCTTTATGCCCACTCCCCTGATAACCTCCCAACTGCGTT AGAGCTCTTCCACCTCATGGACGTCCCGCCGAACGAGTCCACATTCAACCCAATCATAGCCGCGTTGGCAGCCCAGAACG ACGGGTCGTTTAAAGCCATTGCTTAGTACCGGAAGATGCTTGAGCTAGAACTCAGGCCGCGTTTGATAACGCTGCTTGCT TTGCTCCCTGCTTGTGTTAACGTCGCGGCGCTGAATTTGATTAAGGAGATTCATGGGTATGGAATAAGGAATGATATCGA CCCGCATCCCCAATTGGGTAGTGGACTAATTGAGGCTTATGGAAGATGTGGTTGCCTTGTGAATTCGTGTAACGTGTTTT CGAAAATGAGGGATATGGATAAGGATGTGGTTGCGTGGAGTAGTCTGATATCTGCGTATGCGCTTCACGGGGAGGCTAAA GCCGCGTTGGAGACGTTCAAGGAAATGGAAATGGCGGGAGTGAAGCCTGATGGGATCACTTTCCTCGGGGTGTTGAAGGC TTGCAGCCATGCCGGGTTTGCGGATGATGCATTGTGTTATTTTACGAGAATGCAGAGGGATTATGGTGTGGAGGCGAGTA GCGATCATTACTCGTGCTTGGTGGATGTGTTGAGTAGGGCTGGGAGGTTGCATGAGGCGTACGAGGTGATAAGAGGGATG CCGGTGAAAGTGACCGCCAAGGCGTGGGGCGCGCTTCTTGGGGCTTGTAGGAATTTTGGGGAGTTGGGATTGGCTGAGAT TGCAGGGAAAGCTTTGGCCGAGGTTGAGCCTGAGAATGCTGCAAATTATGTTCTGTTGGCAAAGATGTATGCTAGTGTTG GGAGACAGGAGGAGGCAGAGAGATTGAGGAGGGAAATGAGAGAGCGGGGAGTGAAGTCAACAACTGGTAGTAGCTGGGTT GTGTATTCAGAGTCATGAAGTGTAATGGGCGTTTGGATTTACTAACTTCAGGGTCTAAGGTGCATTTTCTCAGAAGCTGT GACTGAAAAGCTACGAGATAAGCTTTCACTTAGAAGTGATTCTGTAGAAATGATTCTTTGGCATTTCATTGTGGAGCTAA CGATACCATTCACCTCATGTTAGCATACCAAAAATAATGTTCTTGGAAACAGGAAGGATGAAGTTCACATAGGCAGGGTA TGAATAGGCTCCAACACTTGTTGTCAAGGTGCTTTTATGGACATGAATCCTCTGATTTTGGCTCCAAGGTTTTGAATGGA GACTGGGAGCTCAATTTGCATATAAAAGCTATTAGTTAATTCCATATACCTCTAAAATCAGAAAGTTGTGACAGCACTTG TGATTTCAGACTGCAATTTGAAAACCTTTCTGAGAGCCTGACATGACTTTGTTGTTTGAAGATGGAGATTAACACCCCCT ATACAAGAGGCCTCGCGAGAACATGGTCCCCCATTCTTGCAATGAGTGAGAGTTCAACTCCGCGCTGATGATCCACAGAT ACTAGATCGTGATCTTGTAAATTCGTTATAAGCTGATTTTATGGTTGAAGATATTGGTTGGGCAATTATTTAATCTCTTT TCTTACCTTGTTCTTTATGCCAGATCACCATGCTCAAGCAAATTTCTAACAAACTTAATGTAGATAAAATTATAAACTAA GGGTGTGTTTGAGTAAACAACTTAATTAAACGGTTAATGGCTTAATGCATAAGCGCTTATTCATAAGCTGCTGTGAGAAA CTTATTAAAATAAAT
CDS sequence (LotjaGi6g1v0214200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGAGCTAGAACTCAGGCCGCGTTTGATAACGCTGCTTGCTTTGCTCCCTGCTTGTGTTAACGTCGCGGCGCTGAA TTTGATTAAGGAGATTCATGGGTATGGAATAAGGAATGATATCGACCCGCATCCCCAATTGGGTAGTGGACTAATTGAGG CTTATGGAAGATGTGGTTGCCTTGTGAATTCGTGTAACGTGTTTTCGAAAATGAGGGATATGGATAAGGATGTGGTTGCG TGGAGTAGTCTGATATCTGCGTATGCGCTTCACGGGGAGGCTAAAGCCGCGTTGGAGACGTTCAAGGAAATGGAAATGGC GGGAGTGAAGCCTGATGGGATCACTTTCCTCGGGGTGTTGAAGGCTTGCAGCCATGCCGGGTTTGCGGATGATGCATTGT GTTATTTTACGAGAATGCAGAGGGATTATGGTGTGGAGGCGAGTAGCGATCATTACTCGTGCTTGGTGGATGTGTTGAGT AGGGCTGGGAGGTTGCATGAGGCGTACGAGGTGATAAGAGGGATGCCGGTGAAAGTGACCGCCAAGGCGTGGGGCGCGCT TCTTGGGGCTTGTAGGAATTTTGGGGAGTTGGGATTGGCTGAGATTGCAGGGAAAGCTTTGGCCGAGGTTGAGCCTGAGA ATGCTGCAAATTATGTTCTGTTGGCAAAGATGTATGCTAGTGTTGGGAGACAGGAGGAGGCAGAGAGATTGAGGAGGGAA ATGAGAGAGCGGGGAGTGAAGTCAACAACTGGTAGTAGCTGGGTTGTGTATTCAGAGTCATGA
Protein sequence (LotjaGi6g1v0214200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLELELRPRLITLLALLPACVNVAALNLIKEIHGYGIRNDIDPHPQLGSGLIEAYGRCGCLVNSCNVFSKMRDMDKDVVA WSSLISAYALHGEAKAALETFKEMEMAGVKPDGITFLGVLKACSHAGFADDALCYFTRMQRDYGVEASSDHYSCLVDVLS RAGRLHEAYEVIRGMPVKVTAKAWGALLGACRNFGELGLAEIAGKALAEVEPENAANYVLLAKMYASVGRQEEAERLRRE MRERGVKSTTGSSWVVYSES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 140 | 140 | 1.2E-26 | ||
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| PANTHER | 12 | 241 | 230 | 1.7E-55 | – | |
| Phobius | 22 | 25 | 4 | - | – | |
| Phobius | 26 | 260 | 235 | - | – | |
| ProSiteProfiles | 44 | 74 | 31 | 5.514 | ||
| Pfam | 51 | 74 | 24 | 0.21 | ||
| Pfam | 76 | 124 | 49 | 5.1E-10 | ||
| ProSiteProfiles | 77 | 111 | 35 | 12.079 | ||
| TIGRFAM | 79 | 112 | 34 | 4.9E-7 | ||
| ProSiteProfiles | 112 | 142 | 31 | 7.311 | ||
| Gene3D | 141 | 216 | 76 | 2.3E-9 | ||
| ProSiteProfiles | 148 | 178 | 31 | 7.958 | ||
| Pfam | 151 | 176 | 26 | 0.0058 | ||
| TIGRFAM | 152 | 175 | 24 | 0.0015 | ||
| ProSiteProfiles | 214 | 248 | 35 | 10.161 | ||
| Pfam | 219 | 246 | 28 | 0.12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0214200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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