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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0216400 |
| Transcript ID | LotjaGi6g1v0216400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT3G06430.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430, chloroplastic; TrEMBL-Plants: tr|K7LCI9|K7LCI9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0216400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:51829211..51834039) extracted from Lotus japonicus Gifu genome v1.2.
TATAAATTTATTTTTAGCACTAAGTTCAAACATAACCCTCCTCTCCAATTCTCAGTTGTCTATCTGTGTGAGACAGTCTC TGAGGTTGTCTCGATGGCTTCAACATCATCATCACTCTCATTTTCTTCCTCCATTCTTCCTTCACCCATTCCCCATGCCA AATCCAACCCAGTACCCCAAAATCCAATCTTTCGGGTTACCCACTGCTCAGTTTCAGCTCAGGCGTCAAAAGCTGGTTCT TCTTCATCTTCTGTGTCCAAACACCGACGACAACGCAAAGAAACTGAGTTTCCTCAAGAATTGTTCTTTGAGAATATGTT GGAGAAACCCAAGAAGATGAAGAAGGAGAAGAAAAAGGTGAAGAAGCAGAGCAATCTTAAGGCCTGGGCTTACACTCTCA CTGAAGCCTTATCCGATTGCATTCACCAGAACCAATGGCTTAAAGCCCTTGAGGTTACTCATCACTCAAAAACTCTACTT TTTTTATATAACTTCACTGTTGATTGAATGTTTGATTTTGATATTCTTATGTTCATTTGAGGGGAATAGATTCTTATAGG TGAAACCTTTACATGATTTGTCAAGGGAAATTTTTGTGCTTATATTTTTTTCATAAATATTTCTACAATTTTGATTGAGA TGTGTTTCTTTAATGTAGAATAAGATAACTTTTTTATGTTACAATTCATGAACAAGTTCATTTGGTTGGTTGATTTTATG GGCTGGTGTTTTTTTGTGGGGTTCATTTAGGAAATAATGTAGTGTGGTACTAACTACATTGTAAGAGTTTATAACTTTTA ACAGAAATCTTATAACCTCTCTTATTTGTGAGGAATTTAATATAATGTTACATACGGATAGAAACAGTTACATGTTTTCT ATTAGAAGTTTGAAACTCAAGGAGAAAGATTACAGTGTTTATGTTAAGAAGTTGTTACTCGTAAAGGTGTCATCATACTA TACCCAAGTAGCCCGCTCTTTTATGGGAGAATTTCTTTTGTAATCCCAAATTGCAAGAACTGTCCAACTAAAATTACAAT GTATGGACAACATAAGCATACATGTTGTTGGATTAAATTTGAAATGACAGTGTATGGATTTAGATCAATTTCGAAGTGTT GGTTGTAAAGCTTTTCAAATGAATAATTCTTTTATAGGAATTATTATGAGTAACTTGCTTAATAAGTGATTTGAATATGC AGTTATTTGACATGGTTAGAGAGGAACCCTATTACCAGCCCAGAGAAGCAACTTACATGAAACTCATTGTGTTGCTTGGA AAATCAGGACAACCCCATCGTGCCCATCAGCTTTTTGACATTATAAAAGAAGATGGTTGTGAAAGTACCAAACTTTACAC GGCCTTAATTGCAGCATATTGTCAGAACAACCTGGTTGATGGGGCACTTTTGATCCTTGATGAGATGAAGAACCTCCCTC AATGTCAGCCTGATGTTTTAACTTACAGTACTTTGATAAAAGCTCACCTGGATGCTCTGAAATTTGAACTGGTTGAGTTG CTGTTTGAAGAAATGGCTGAAAGATCTATCACACCAGACACTTCCACTCGGAACATTGTCCTCAGTGGTTATGGTAAGGC TGGGAGGTTTGATGAGATGGAGAAAATGCTGTCAAGTATGATGGAGAGCTCTACATGCAAGCCTGATGTTTGGACTATGA ACACGGTCGTCAGTGTCTTTGGTAGTAAAGGTCTGATTGATATGATGGAGAAATGGTATGAAAAGTTATGTAATTTTGGG ATACAGCCAGAAACACACGCTTTCAATATTTTGCTTGGAGCATATGGGAAGAAAAGATTGTATGGCAAAATGTCGTCTGT TATGCAGCATATGCGCAAGGTTCAATGTCGATGGACGACCTCAACTTATAACAATCTGATTGAGGCATTTGCAGACATTG GCGATGCTGAAAGCATGGAGCGCACCTTTGATCAAATGTGCTCTGAGGGTTTGAAACCAGATACGAAGACTTTCTGCTGC CTTATCAATGGTTATGGCAATGCTGGTATCTTCCATAAAGTAGTTAGCAGTTTTAATTTGGCTGGGAAGCATAAGATACG TGAGAATACTTCCTTTTACAATACAGTCATATCTGCATGTGCCAAGGAGGAGGCTTTGATGGAAATGGAGAGAGTTTTCG AGCGTATGAAAGAAAAACAATGCCAACCAGATGAAACAACATACTCCATCATGATTGAGGCTTACAGAAAAGAAGGTATG AATGACAAGGTATACTATTTGGAGCAGGAGAAGCAAATGATGATATCTGATGACAAAAGATCGAGTGAGCCAGAGGAGAC GATCCATGGTTGATTTCTGGTTTAGAAATTTGAGTGCTAATGCATCTGCCTCTCCTCCATCTTTTTGAAGCTTCTTTGGA TCCCATTTGAATGAGGACCAAAGAGTACTCATTGGCCTTTATATAGGCTCCAATAAGTGTTTTTTGCTTTGGATCCAAGT GGGCTCGTAGTCTTTCTATTTGATATAAAAAGAACCAATCAATCAGGCTGTCATGCTTCATTTTTTGTGATGAATAAGAA CTCCTGCCTAACTTCATGTAAGTTCATTGCAACTATTTTGCTTTTTGATGCTGACAAGTAATAAATTACTTGAAAGTATT TTACTCATGACTTTTTGCATCAGTAGAAGTTCATGAAATTTCTACATTTTGATGCATTTATTTTCCAGGTATAATGTATC AGTAGAAAATCACTGTAATTGAATCTCTTAGAATGTTGTTATTTATTTTAATATTTGATGCATTATGCTTGTAGTTAACC TCCATCTGTAATCCCCAAAATTCCAACATTTTAATAAAGTAGTATCCTCCATAATCCATACTACTTGTGCACTGTCCATG CTTCCTTTATGTAATTTTCAAAATATGGAACTATAGATTTCCTATACTCCTTGGTCAGAATTGTTCAATCTTCTTCACTC CCCTTTTCCGACCTTATCAACGTAAAGTTTCTTTTCTCATCCACGCTTTTTTTTCCACTCATTTTTCTTCAAAGTATGTG ATCTCAAAAACCTTGATCTTTTAAGGGTCAAAGAACGTCACATATTAAGAATTGTTCAATCTACAAGTTACTGGTATTTC CACTGCTCAAGTTATTGGTTCTTCATTTTCTAGTTGCTTTGGGGAAGAAAGTAATTGTGCATCATCATTTAAGTACAACT AAGACAAGAGATCGTGAATCACAAAGGTTCATTCAAAATTCCCACTATTTTATTTACAAATTGGAACTTCCACTAGCTTC TGTAATTTGTAAAGAACAGATATTAGCCTCAAAAAGTGCCATGACCCTTTCAAGGCCTCACTGTTTCAGTTAACTGGCAG CTTCCCTCGTTATATATCAGCAGGAGCCTGACCTTATTGTACATAGAAAAATGGTGAAATTTGATTGCATGGAAGCTAAT AAAGTATTGCTATTTGCTAAAGTGGAAAATGAATTTACTTGAGCAGGCTACATGTCTTTTGCAGTTGTATGTCTTCTATG CAATTATGTTATTTTGGAGTATAGCTACTTGAGTTTGATACCCATTTTCATTTCCATTTTCCCTACTTTTGGCATTGATT TTTATAGCTATTTACAACATGTTTGGAAATCCTTGTATAATCAATTCTAAAACCAAAAACAATTTTGAGGAGAAACTGTG ACTTGTGAGTAGCTTTTGGTGTCAATAAGTTGATCCAAACATGTTATTACACAGGGAAACATGTCTCCATTTTGACATTA TAATGAGATTCATGTTTTCCGTCATCTTTGTCCTGAAAATTCTCTGCACTACTTCATAACTTCAGTCACAGAGTGCTCTT CAATCTCCATGTAGTAAGCTACTAGCTCCCTGGTTAACCGTATGAAGAACTCAAGCTGTTTCTAGATCTTGTAAATGCAA TTTTGTCATTGGAAGGAAAGAGATATAGATGTGATGAGACATGTGATAAAGAAAGGAACAGAACATTGGAGAGGTGTAAA GTGAATTAAAAAGAAGTAATGTAAGAATCAAGGTGCTTATACACAAAAGTAGAAGGAGAAAAAGAGAAAAATTGCACTTT GAATATAAGTTCTTGTAGACAAAGCAGTGTCATTTCAATTTTTTAAAACTAATACAATAATGTGTTAATTAATATTTAGA AGATTAATTGAGCTAAAAATTTACCCTTAACACTCTTTTGTATCTTTCACTAGTCGCTTTTACAAATGATGTAACTGAAA GCTAGTGGTCCAGTATGTCGACAGGGTACCAGTACAATTGTGTACAAATGGCTTAATATTATTGCAATCTGTAAAATCAT TGAGAAAAAAGGCAACACCATTATTCATAAGAAACAAAGGCTTTTGTTTCTTCACACAGTATGAATCTAAACACAAGGTT TTGATAATTCCACCTGTTTTTTTGTAAGGTGGTGTTTTCTATTCACTATGTTATGCCAAAGAAAATGTATTATTCTTTGA TGGTTGTTTTTTATTGTTCTTTTAACACCTCATCATATTTTCACGACTCATGTGCAGAGTGGGAAGGCGAAAAACACATG CTTGTCTGATTTGGGTCCACTGCTGCCAATGACAGCACGAAAGAAGAAGGGAAAGTGATGATGGTGGTTAATTGTAAAGT GTGTGGTTAAAATGATGATTTTATTTATAATTAAAATATCTTCCATCGTGAGAAAGTCTTTACGAGGTTATAACAAACTT CTACACCGGTACCGATAGCCTAAATGGTACTTGATGGATTAGAATTCTTCAAGTCCAGGGTTCAAATCTTACCGGTACCT AGATACCAAACAAACTTCTACAATGACTT
CDS sequence (LotjaGi6g1v0216400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAACATCATCATCACTCTCATTTTCTTCCTCCATTCTTCCTTCACCCATTCCCCATGCCAAATCCAACCCAGT ACCCCAAAATCCAATCTTTCGGGTTACCCACTGCTCAGTTTCAGCTCAGGCGTCAAAAGCTGGTTCTTCTTCATCTTCTG TGTCCAAACACCGACGACAACGCAAAGAAACTGAGTTTCCTCAAGAATTGTTCTTTGAGAATATGTTGGAGAAACCCAAG AAGATGAAGAAGGAGAAGAAAAAGGTGAAGAAGCAGAGCAATCTTAAGGCCTGGGCTTACACTCTCACTGAAGCCTTATC CGATTGCATTCACCAGAACCAATGGCTTAAAGCCCTTGAGTTATTTGACATGGTTAGAGAGGAACCCTATTACCAGCCCA GAGAAGCAACTTACATGAAACTCATTGTGTTGCTTGGAAAATCAGGACAACCCCATCGTGCCCATCAGCTTTTTGACATT ATAAAAGAAGATGGTTGTGAAAGTACCAAACTTTACACGGCCTTAATTGCAGCATATTGTCAGAACAACCTGGTTGATGG GGCACTTTTGATCCTTGATGAGATGAAGAACCTCCCTCAATGTCAGCCTGATGTTTTAACTTACAGTACTTTGATAAAAG CTCACCTGGATGCTCTGAAATTTGAACTGGTTGAGTTGCTGTTTGAAGAAATGGCTGAAAGATCTATCACACCAGACACT TCCACTCGGAACATTGTCCTCAGTGGTTATGGTAAGGCTGGGAGGTTTGATGAGATGGAGAAAATGCTGTCAAGTATGAT GGAGAGCTCTACATGCAAGCCTGATGTTTGGACTATGAACACGGTCGTCAGTGTCTTTGGTAGTAAAGGTCTGATTGATA TGATGGAGAAATGGTATGAAAAGTTATGTAATTTTGGGATACAGCCAGAAACACACGCTTTCAATATTTTGCTTGGAGCA TATGGGAAGAAAAGATTGTATGGCAAAATGTCGTCTGTTATGCAGCATATGCGCAAGGTTCAATGTCGATGGACGACCTC AACTTATAACAATCTGATTGAGGCATTTGCAGACATTGGCGATGCTGAAAGCATGGAGCGCACCTTTGATCAAATGTGCT CTGAGGGTTTGAAACCAGATACGAAGACTTTCTGCTGCCTTATCAATGGTTATGGCAATGCTGGTATCTTCCATAAAGTA GTTAGCAGTTTTAATTTGGCTGGGAAGCATAAGATACGTGAGAATACTTCCTTTTACAATACAGTCATATCTGCATGTGC CAAGGAGGAGGCTTTGATGGAAATGGAGAGAGTTTTCGAGCGTATGAAAGAAAAACAATGCCAACCAGATGAAACAACAT ACTCCATCATGATTGAGGCTTACAGAAAAGAAGGTATGAATGACAAGGTATACTATTTGGAGCAGGAGAAGCAAATGATG ATATCTGATGACAAAAGATCGAGTGAGCCAGAGGAGACGATCCATGGTTGA
Protein sequence (LotjaGi6g1v0216400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTSSSLSFSSSILPSPIPHAKSNPVPQNPIFRVTHCSVSAQASKAGSSSSSVSKHRRQRKETEFPQELFFENMLEKPK KMKKEKKKVKKQSNLKAWAYTLTEALSDCIHQNQWLKALELFDMVREEPYYQPREATYMKLIVLLGKSGQPHRAHQLFDI IKEDGCESTKLYTALIAAYCQNNLVDGALLILDEMKNLPQCQPDVLTYSTLIKAHLDALKFELVELLFEEMAERSITPDT STRNIVLSGYGKAGRFDEMEKMLSSMMESSTCKPDVWTMNTVVSVFGSKGLIDMMEKWYEKLCNFGIQPETHAFNILLGA YGKKRLYGKMSSVMQHMRKVQCRWTTSTYNNLIEAFADIGDAESMERTFDQMCSEGLKPDTKTFCCLINGYGNAGIFHKV VSSFNLAGKHKIRENTSFYNTVISACAKEEALMEMERVFERMKEKQCQPDETTYSIMIEAYRKEGMNDKVYYLEQEKQMM ISDDKRSSEPEETIHG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| MobiDBLite | 1 | 30 | 30 | - | – | |
| MobiDBLite | 1 | 19 | 19 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 24 | 9 | - | – | |
| Phobius | 25 | 496 | 472 | - | – | |
| MobiDBLite | 43 | 63 | 21 | - | – | |
| PANTHER | 43 | 342 | 300 | 5.9E-68 | – | |
| Gene3D | 81 | 268 | 188 | 1.4E-37 | ||
| ProSiteProfiles | 134 | 168 | 35 | 8.846 | ||
| Pfam | 137 | 166 | 30 | 0.032 | ||
| ProSiteProfiles | 169 | 198 | 30 | 6.38 | ||
| TIGRFAM | 171 | 204 | 34 | 1.3E-5 | ||
| Pfam | 171 | 214 | 44 | 6.7E-11 | ||
| ProSiteProfiles | 204 | 238 | 35 | 10.052 | ||
| TIGRFAM | 207 | 240 | 34 | 1.8E-4 | ||
| ProSiteProfiles | 239 | 274 | 36 | 10.797 | ||
| Pfam | 242 | 269 | 28 | 1.1E-4 | ||
| TIGRFAM | 244 | 276 | 33 | 1.1E-7 | ||
| Gene3D | 269 | 356 | 88 | 8.1E-17 | ||
| ProSiteProfiles | 275 | 309 | 35 | 9.164 | ||
| Pfam | 278 | 307 | 30 | 0.063 | ||
| PANTHER | 306 | 476 | 171 | 5.9E-68 | – | |
| ProSiteProfiles | 310 | 344 | 35 | 7.202 | ||
| Pfam | 313 | 339 | 27 | 0.13 | ||
| ProSiteProfiles | 345 | 379 | 35 | 11.257 | ||
| Pfam | 346 | 391 | 46 | 1.7E-10 | ||
| TIGRFAM | 348 | 381 | 34 | 1.1E-6 | ||
| Gene3D | 358 | 493 | 136 | 9.3E-27 | ||
| ProSiteProfiles | 380 | 414 | 35 | 7.07 | ||
| ProSiteProfiles | 415 | 449 | 35 | 11.312 | ||
| Pfam | 415 | 461 | 47 | 3.4E-14 | ||
| TIGRFAM | 419 | 451 | 33 | 2.4E-6 | ||
| Coils | 428 | 448 | 21 | - | – | |
| ProSiteProfiles | 450 | 486 | 37 | 6.752 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0216400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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