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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0220500 |
| Transcript ID | LotjaGi6g1v0220500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SH3 domain-containing protein; TAIR: AT3G43230.1 RING/FYVE/PHD-type zinc finger family protein; Swiss-Prot: sp|Q9URW6|YIE2_SCHPO SH3 domain-containing protein PJ696.02; TrEMBL-Plants: tr|A0A0L9TRV1|A0A0L9TRV1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0220500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:52420261..52423292) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAACTTATCGGATAAGATAATCAAATTCCAAGATAATTTTGAAAATTCCTAGGTTTGTTGCTTCAACTTCCATTCTA TTCTGAATATTCTTCACCTGATCATAGCTAAAAAAATTGTTATGATCAGGTGAAGAATATTCTATTCTCTATTCTATTCT CTCACACAATTCTCCATAAGCATGCGCCTCCTTGCTTAATCCCTTTATATGCATACGCATCTCAATTTAGGTTTTGTTAT TTGTAATAGCCTTGTTCAATTTTAGTTTCAATGTTTTTTCCCAGTTGTTTCCAACAAGGATTATAGACTGAAGCTTTCAA TTGCAATCTCGGGTTGCTAATTTTGGATAATGCAATCTGATGTGAATGAAATGGCAGCCTCTGATGATGAATTTCCACCC TCATATGATGATGATAATTGTAGCTATGGTGAGTCTACAAGGGCTGAACCTAAGCCTCCAGACCAAGAAAAAGAGTTTTT GAATCAGTTTAATTTTAATGCTCTAGATTTGTTTGATGGGGGTTATGAATCAAATGACGAGTCTCATGGTATCACACCAT CTTTGGCTAAAAAGACTCCAGAGATGGTGAGCCTGAAGAATATGCTTACTGGTGGTGCCTTGGCCCTTTTGACTGGAAGA ACTAAAACTGCTAATCAGCTGTCCACTGATTCCAATGTGTCCTCTTTTGGCTCTGGAAAGAATGGAGATACTGTCATGGA CTCATCAGTTTACACACCGAGTGCGCCGCCTTTCGAGCTGGTTGGGATTGATTATGGTGCCTACAAAGAGGTGCTGGAGG CTGAGCCTCCTGAGTGGCTGCCTGATAGTTCTTCTACTGCTTGTATGGGGTGTGCTGCTCCGTTTACTGTGCTTACCCGC GGCAGGCATCACTGCCGGTTCTGCGGTGGTGTTTTCTGCCGCGGGTGTACGCAAGGGCGATGTTTGTTGCCGGTTAAGTT CAGGGAAAGGAATCCACAGAGGGTGTGTGATGCCTGCTATGATAGGCTTGACCCTTTGCAAGGTGTTCTTATCAATACAG TTAGCAATGCTGTGCAGCTGGCAAAGCATGATGTGATGGACTGGACTTGTGCTAGAGGGTGGCTTAACCTTCCTATTGGC TTGTCTATGGAGCATGAGATATATAAATCATCTAACACTTTAAGAAGCTACTGCCAGGTTGTTTTTTCTTCTTTGTGTCA TGCATTGAGCAAGTGACTTGTTCTCATATTCTAGTAATAACATAATGTATTGCTTCTATGATGTTTGTTTGAGATTGTGG TTGATATTTGCTAATGCTATTAGGTTTGAACAAGTAATTGCCTTGTTGATATGTCCGAATACTAGTACATTAGTTCTGCA AGCTGTTATTAACTCATAACTTGTTCAATGAACAGGTGGCCATATCAAATCCTGAGAAGTCCATCCCTTTATCCATTCTC ACCGGAGCCAAAGGGCTAGCAATTTTGACAGTTGCCAAAGCTGGTGCACTGCTCTCTTACAAACTAGGTACTGGTTTGGT TGTTGCTCGAAGATCAGATGGATTGTGGTCAGCGCCATCAGCCATATTCTCCCTCGGTTTAGGATGGGGTGCACAGGTAA GGAGACCATACGTGGGTTTTAGGATTGTGGAAACATATCTCAACTGTTGTGTTTCAGATATTGATTAAATTGAAATAAAA AAGAAAGAATAGTATAGAGTCTAGAAATTTCTTTTGTTCTTCAATTCTTTGTTGATACTTGATAGAATATTTTCTTGCAA CCGTGTTTGCATGCCACTCTACCATTGGTAAAATCTTGAACATTGCCATTATAATTGGAATTCATTATCAAAATCAAAAT TCTTGGAGGCATGCACTACTATGTGTTTACTTGGTTATATGATCTCTTTTGTGACTGATGAATTCATGCTCATTCTATGT ACTCAGATTGGTGGTGAACTTATGGATTTTATAATTGTGCTTCGTGATACGAAAGCTGTCAAGACATTTTGTAGCCGCAT GCATTTGTCTCTTGGTGCTGGTTGTAGTGCTGCAGCAGGGCCTCTCGGAAGAGTGCTCGAGGCAGATATCCGAGCCGGAG ATAGAGGTTCTAGCATGTGTTATACTTATAGTTGCAGCAAAGGTAGTTTGCAGTGAAACTTTGATGCATATCTCATAATC TTCTTCTGATTGTCATGAGCATTTGAGGTGCAAGATTGTATGGTTGGCCGTTCAATTTAATAACCGGCTAATATTATCAA TTTTCTGTAGTATTTTCTTAATTATAACTCACTTTGGATAATCTTTTTTCTACTTCATGATATGTTTGAAATATTGGCTA ACACTAAATGTTCCCTAATTGTAGGTGCATTTGTGGGAGTATCATTGGAAGGAAATGTCGTTGCAACCAGGATGGACGCG AATTTGCGCTTCTATGGTGATCCTTATCTCACCACATCTGACATTCTATTAGGGATGGTGGACAGACCAAAGGCTGCTGA GCCATTGTATGCTGCTCTTCAAGACTTGTATTCCAGTTTAAGCTAGTTGTTCTGGTCACAATTGTAAATTGCACTAAGTC ATTCTATCAGCTGCATATGGAGAGTTCAAATCCAATGCTCTGCTTATATAGAATTCCGGCACATGCATGGAGTTCTGCAA TTTGGTACCGTTTTCAAATTTGAAGGCATTACTTATAGAGGGTGATGGACCAATACTTGAAGCCTTATTTTATGATGTGA TGCCTGCCAATGCCAAATGCGCCAATTTCTCAGGTGAATATGTTACTGAATCTTAATTGTACATAGCCAATCCAATAAGT TATTATTTTCGTTTCTTGCATTCTTCGATCCAGGATTAGGGGTTTATTTCACCTTGTGTTGGACTCAATCTTCCAAAATG GCACTATTACATCCATAAATATTTATAGGCAATATGATAATTTATGAATTGCAATTGCAAATGAAAATTTAATATTTTAT TTCAGCCCCAATGAAACCCAACATAGTAAACAATTTTTTAAATCAACGTTCTTTCTTTGGTTTAAGTCCCTC
CDS sequence (LotjaGi6g1v0220500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATCTGATGTGAATGAAATGGCAGCCTCTGATGATGAATTTCCACCCTCATATGATGATGATAATTGTAGCTATGG TGAGTCTACAAGGGCTGAACCTAAGCCTCCAGACCAAGAAAAAGAGTTTTTGAATCAGTTTAATTTTAATGCTCTAGATT TGTTTGATGGGGGTTATGAATCAAATGACGAGTCTCATGGTATCACACCATCTTTGGCTAAAAAGACTCCAGAGATGGTG AGCCTGAAGAATATGCTTACTGGTGGTGCCTTGGCCCTTTTGACTGGAAGAACTAAAACTGCTAATCAGCTGTCCACTGA TTCCAATGTGTCCTCTTTTGGCTCTGGAAAGAATGGAGATACTGTCATGGACTCATCAGTTTACACACCGAGTGCGCCGC CTTTCGAGCTGGTTGGGATTGATTATGGTGCCTACAAAGAGGTGCTGGAGGCTGAGCCTCCTGAGTGGCTGCCTGATAGT TCTTCTACTGCTTGTATGGGGTGTGCTGCTCCGTTTACTGTGCTTACCCGCGGCAGGCATCACTGCCGGTTCTGCGGTGG TGTTTTCTGCCGCGGGTGTACGCAAGGGCGATGTTTGTTGCCGGTTAAGTTCAGGGAAAGGAATCCACAGAGGGTGTGTG ATGCCTGCTATGATAGGCTTGACCCTTTGCAAGGTGTTCTTATCAATACAGTTAGCAATGCTGTGCAGCTGGCAAAGCAT GATGTGATGGACTGGACTTGTGCTAGAGGGTGGCTTAACCTTCCTATTGGCTTGTCTATGGAGCATGAGATATATAAATC ATCTAACACTTTAAGAAGCTACTGCCAGGTGGCCATATCAAATCCTGAGAAGTCCATCCCTTTATCCATTCTCACCGGAG CCAAAGGGCTAGCAATTTTGACAGTTGCCAAAGCTGGTGCACTGCTCTCTTACAAACTAGGTACTGGTTTGGTTGTTGCT CGAAGATCAGATGGATTGTGGTCAGCGCCATCAGCCATATTCTCCCTCGGTTTAGGATGGGGTGCACAGATTGGTGGTGA ACTTATGGATTTTATAATTGTGCTTCGTGATACGAAAGCTGTCAAGACATTTTGTAGCCGCATGCATTTGTCTCTTGGTG CTGGTTGTAGTGCTGCAGCAGGGCCTCTCGGAAGAGTGCTCGAGGCAGATATCCGAGCCGGAGATAGAGGTTCTAGCATG TGTTATACTTATAGTTGCAGCAAAGGTGCATTTGTGGGAGTATCATTGGAAGGAAATGTCGTTGCAACCAGGATGGACGC GAATTTGCGCTTCTATGGTGATCCTTATCTCACCACATCTGACATTCTATTAGGGATGGTGGACAGACCAAAGGCTGCTG AGCCATTGTATGCTGCTCTTCAAGACTTGTATTCCAGTTTAAGCTAG
Protein sequence (LotjaGi6g1v0220500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQSDVNEMAASDDEFPPSYDDDNCSYGESTRAEPKPPDQEKEFLNQFNFNALDLFDGGYESNDESHGITPSLAKKTPEMV SLKNMLTGGALALLTGRTKTANQLSTDSNVSSFGSGKNGDTVMDSSVYTPSAPPFELVGIDYGAYKEVLEAEPPEWLPDS SSTACMGCAAPFTVLTRGRHHCRFCGGVFCRGCTQGRCLLPVKFRERNPQRVCDACYDRLDPLQGVLINTVSNAVQLAKH DVMDWTCARGWLNLPIGLSMEHEIYKSSNTLRSYCQVAISNPEKSIPLSILTGAKGLAILTVAKAGALLSYKLGTGLVVA RRSDGLWSAPSAIFSLGLGWGAQIGGELMDFIIVLRDTKAVKTFCSRMHLSLGAGCSAAAGPLGRVLEADIRAGDRGSSM CYTYSCSKGAFVGVSLEGNVVATRMDANLRFYGDPYLTTSDILLGMVDRPKAAEPLYAALQDLYSSLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 39 | 39 | - | – | |
| PANTHER | 45 | 462 | 418 | 1.2E-215 | – | |
| PANTHER | 45 | 462 | 418 | 1.2E-215 | – | |
| Gene3D | 145 | 233 | 89 | 2.5E-22 | ||
| SMART | 151 | 222 | 72 | 1.5E-23 | ||
| SUPERFAMILY | 154 | 232 | 79 | 6.24E-21 | ||
| Pfam | 155 | 220 | 66 | 5.3E-19 | ||
| ProSiteProfiles | 159 | 221 | 63 | 12.553 | ||
| CDD | 262 | 463 | 202 | 1.70886E-111 | – | |
| Pfam | 337 | 462 | 126 | 2.9E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi6g1v0220500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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