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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0221600 |
| Transcript ID | LotjaGi6g1v0221600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 3-oxoacyl-[acyl]-carrier-protein] synthase; TAIR: AT1G74960.1 fatty acid biosynthesis 1; Swiss-Prot: sp|Q9C9P4|KASC2_ARATH 3-oxoacyl-[acyl]-carrier-protein] synthase II, chloroplastic; TrEMBL-Plants: tr|A0A0L9UY00|A0A0L9UY00_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0221600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:52618339..52625004) extracted from Lotus japonicus Gifu genome v1.2.
AGAGGAGTACGCACAGACACAGTGGTGAGTGAGTGTGGTTGTGGACAGAATAGAATATGTCTTCTTTCTCCCACCATATA CAATGCAGACGAAAATGAAATGCACCCTTGTTCGATTCAATTCCTGACCACCACCACCACCACCACCGCCACGTCACCCT TCTTCTTCCTCCTTCACTCTCTCCACCATGGCTTCTTCATTGCTCTCCTCTTGCATGTCTCTCTCCCACCACCACTCTCG CCGCCGCCGGAACCTCCTCTCCAACTCCCAACTCACCTCTTTCAATCGCACGCCCACCACCAATCTCAACCCTCCGCCCC GCTCCGGTAACTTCCTCGATTCAACTTATTATTGCCTTTCCCTTTTCCTCTCTGTACCACGATGCATTTTCCGTCACTAC TGTTGTGTGTGCTTCTTCATTTCTGTATTCATTTGTTCAAATTAGTATAAACATTTTCCTTATTCAATCTACTGCTACCT ATTTCAGTTGCTTTGTTCCATTAGAAATTAAATAAACAGGGTTTGAATTCATATGGATACTACTATGAGGACTGAGGAGT GTTCATCACAGTTAAGCATCAAAACCATGCTCAATTTTATAGATAAGGACTTGGTTTTAATTTCATTATTATTATTTTTT TCCCATGGCTTCCTTGCTTTTGTTCATAATGTAAAATAAAAATTCACCACCTATGCTATCTTATATTGGCTGTATGTTAA TAACAAGCTACAATAGATTTTTTTAAAGAAAAATTAGTTAAGGGCATGAGATATATAAATTTGTGGCAGATATTACATCA TGAGTGGTTTTGTTTCAACTATGTGAACTCTTTGGACATGTCTATGCTGAAATCTTCTGCATGCATCTTGCAGCTTGGTA TGTTTGGTTCAGTGTTTTGACTTTGATCAACTTATCATTCTATGTAATGGGTATATGTTCTGCTGTGTGATGAAGGTTTG ATAATCGGTGGCATTTTTGTTTTGCCTTTTGTACGTTTATAGGACTTAGTTTCCTTAAACCTGAGCATATCTATTCTATT CTTGGCTTGTGGTTACATAAACTTACATTCCCTGCTCTATATTGATGTGAAGCTTTAGGATTACAATTCGTTGCCTTTAA AAACTACGCATCTTAATAAGCAGTAGCATTCACATTCTTGCAAAAGTTCTGCTGGCATTCCTTTCTTGAGTGGTAGGAAT TTTACTCCAACTGTGAGCTCCAAAGTACTGCTGATATTGAAGGAAGCCGCTTTTTGTCTGATTTGTGGTCAACTGTCCAT ATAATGCCTTACTTTTGTAAAATTTCAAGGTAAAGTAATGGCTGTAGCTTTGCAACCTGCTCAAGAAGTTACAACAAGGA GAAAACCTCCTGTAAAGGAAAGACGAGTAGTTGTGACTGGTTTGGGCGTGGTTACATCACTTGGTCATGATCCAGATGTC TTCTACAATAATTTACTTGATGGTGTCAGTGGGATAAGTGAGATTGATAGATTTGACTGCGCTGAGTTTCCAACGGTAAA TGATATTTCATTCTAATTTTAAGCGCAGTTGTTGCCTTCTTTAGCTTCTGATTTTCGTGTTCTCTATCTCCAGAGGATTG CTGGGGAGATCAAGTCTTTCTCGACTGATGGCTGGGTAGTACCAAAACTTTCAAAGAGGATGGATAAATTTATGCTGTAT CTGCTGACAGCGGGAAAAAAGGCCTTGGTTGACGGTGGAATTACTGAAGATGTAATGGATGAGTTAAATAAAAGAAAATG TGGTGTTTTGATTGGATCAGCAATGGGTGGCATGCAGGTAATGACTGATAATGTGCTTGTGCAAACAGATACTGTTGTCA CATTCAGCATTTTTTTTTATATGTAGAAGCTTCATAACATACGTAGGAGATATTTTATCTATTGTCTTGTAGATTGAATT TACTACCACATGCAATCCAAGATGGAGCGAGAAGGCTATTATATTCACAAGTTCATTGCTTTGATTTTTTGGCTATTTAA TTTTTCATGTTTATCTTGAACAGGTTTTCCATGATGCTATTGAAGCTTTACGAATCTCATATAAGAAGATGAATCCTTTC TGTGTACCCTTTGCAACAACAAATATGGGCTCTGCCATGCTTGCAATGGATCTGGTCTGATCAAACACAACTTAGCAAAT ATGGGTGCCTTTTTTTTGTCTTAAGCTTTTGACAAATAATTTCTTTTATAAAATTGTAGGGCTGGATGGGCCCTAATTAT TCAATCTCTACAGCGTGTGCTACAAGTAATTTTTGTATATTGAATGCTGCAAACCATATCATTAGAGGTGAAGCTGTAAG TATTTCACTTCAATATTTTCTTGTAAGATACTGGATTTCTCACATTTTCTCAACTTATTTTTTCTTAAAAGAAGTTTGGT ATAATGATAGTTATTTTATTGAAAGGCGCTCAAAATTTGAGTTCACCTGCAGGACGTGATGCTTTGTGGTGGCTCAGATG CTGCTATAATACCAATTGGTATCCTATTTTTTCTCACTCTTTCTGGCTTGAATGAAGTTGTCTTGGGCTTGATCTGATAT CAATTCAACAACTATTGGTGTAGGTTTGGGAGGTTTTGTAGCATGCAGGGCACTCTCACAGAGAAATAGTGATCCAACCA AAGCTTCACGCCCATGGGATACTGTAATACTATAGAAATCCTGTTGCTTTCTTGTTTCTTTTTCCCACTCTTATTTCTGA GTTTTGATTACATATTTTGACAAACTATAAATCTATATGACCATTGATAGTCAGATGAGCATATCTTGTTTTTTTAAGAA ATCAAGGAAGGTTACTTCTATAAAAAAGTGCAATATTTTCTAGATTCAGCAACTCACTTTATATCTTCTAAAAGTTTCTG ACAACGTTTTATGAGCATAAAAAATTATCAGAAAGGCCAAAAGTATTGTTAAATCTTCTTCATACAAATAGGATACTTGA CAAACTATAAATCTATATCACCATTACAGTTAGATGAGCATGTCCTGTTTTTTAAAAGAAATCAAGGAAGCTTACTTCTA TAAAAAAGTGCATTTTTTTCAAGATTCATCAACTCAACTTTATATCGTCCGAAAGTTTCTGACAATCTTTTATGAGCAAA AATAATGTATCAGAAATGCCAAAAGCATTGTTAAATCTTCTTCATACAAACAGGATGCGAAAGACACTTCAAGAAGGTTT TTTTTTTAATGGAACCATAACAATCAAAAGTTATTGACATCTATAATTTGAGGGGGGTGGGGATTCTTGAGATAAAAAAA GAGAAACCATGAAGGCATCCAACTGAATAATGATAATGAATTTTTTTTATTCATTTCTTAAAATGGGCAAACTTTACAGC ATATTTCAATAAAAAGTTATAGCATATGAAATTTTATTGTTTATCATTTTCTTCATCTTGTCCTTCTCTTCTGATGTTAA CCATGACTTTACTTGCTTGGTAACAGAATCGTGATGGATTTGTCATGGGAGAAGGGGCTGGAGTTTTGCTTTTAGAAGAA TTAGAGCATGCTAAGGTACTTCTATTCTAGTAAAATAATGTGAGAATAAAACACCTTAAAAAGGAACTTTACATCATGTT GTAGAATTTTACTGTAACACTTAGGTATACAATTAATTCTATCTATCTCATTCTTCAGTTCGTTCCGACTTCCATTGGTA TAAAACTCATTGATACATCCATTCTCCTATCCCATGTTAGAATCATGCGTCACACTTCTTTTGCGATTAGCTCTGCCTAT GATTTCTCCTTACATTGATTTGGCAAATATGATTCAAGCAACTGACATGGTCTTCCAACTTTTTGTTTCAGAAAAGGGGT GCAAACATATATGCAGAGTTTCTTGGTGGAAGCTTCACGTGTGATGCATATCATATCACTGAGCCACGTCCTGATGGTAA AGTATTAGATCTTCTTTAAGGCCTATTGCTTTCAGATAATCTAAAATAAAAAACAATAATTGATAGGTTTACCAACAACT TCTATAGGTAGATTAATATTTTGATGACAGTAACCTAGGCTGCAGGACACTAGTATATGTTAATCACAAATTGATTTGGG GGAAATTATATTGACCTCCCTTTCTGTTTGTAGTACACACAATAATCCTCCTCATGTTTGACTCATGATACCAATCTCCC TCAAATGTGTTAAGAAGCTCAAACTTCAATTCTCAATTTCAGCCTTTATTTAAGGTAAAGCACATCGCTATTCTTACTGA CTTGTTTCACTTCATTTTATCCCATAGTGCTTATCGACATCAATCTGTGAATTTGAGCTTATCTCCAAATTTTTAAAACA CAATCCAAATTATGCCAGACCTCTCAATGTCTAGCTCTCTCACATGCTAACCATTTTAATCTTGCTCCTCAACTTCAGTA TTTTCTTCCAAAATCTCATAACAATCCTCCCAGACTGACTTCAACAAATAATTCCACTCAATATGGTTCTCACCATCACT ATAAAGTTTGATATTGATGAGTTTCGAAGAAGTGGTGACAATGACAGGGGCTTTGCGTCTGCCTTTAACCTTAGTCCCAT TATTGTATGTAGACATTGATAAGCAATCGACACAACTTGAACATAAGAGGATCCAATTACACAAAAAAAGGAAGGACGAC ACCAAAGCGTACACCAGAATCACACGGTTTCAACTTCGCAATGTCTCCGTAATTCGGTAATTGATAGAAATATAACATAA AACCATTCATGTGTCTCCACCTAATAGCTTTAGTTTTTGGGATAGTTGATTCATGACATGACGTAAAAGCCTCTATGACC AAGTGAGGTCTTGTTCATGTCACTCTTAAGAATTTGGGCAAGTCCTGTCTCTCATCTTAAAAACTGTAGAAATGCAATTG CACTTTGGCCATGACGGTTCTCAAATTGGTAGATATTTAATATGTTCCTGCTACATCTGTTTGGTTCCAAAGTAAAACAA AATCCCATGAAGTGTCTTTCTATGCACTTTGCTAACGATATTTGGTAAGCACCTGAATCGTGAATTTGCTGAAAATTTGG TTCCATATATGCCTGCAAATCATTATCTTGATTATGCCTGAACAGGCTGAACTTATATCTCTTTATTCCACATCCCATAC AGGAGGTGGTGTTAAACTTTGCATTGAAAAGGCTTTAGCTCATTCTGGAGTGTCAAGGGAGGATGTGAACTACATAAATG CACATGCCACATCCACACCGGCTGGAGATCTTAAGGAGTACCAGGCTCTGATTCATTGTTTTGGCCAAAATCCTGAGGTG AACATTCTTTCATATATATTTATTTCTTTACTCTCCCTGACCAATTTAAAGGTAATTCTAATCTTTTGCCCTTTTATTTG TTTCAGTATATGCTGCTGCTTATGATATTGTTATGGTAACCACTTACCTAGATCTCTTGTTTATGCAGCTAAGAGTGAAT TCAACAAAATCTATGATTGGTCATCTACTAGGGGCAGCTGGTGGTGTGGAAGCCGTCGCAACAGTACAGGTGAAAACTAC TGTACCGCTTTTTATGAAATTTGTAATAATAATCCGAGCTTTCTGACTAAGAAGTTGATTTCCTTTCCTTTCCTGTATGC AGGCAATAAGGACAGGGTGGGTTCATCCTAATATCAATCTAGAAAACCCCGACAAAGGAGTGGTATGATACTTGTTGCAC CATCTTTGTTTTGAAATTCTTATGTCCTCACATTTATTGGGTTCATCCAAGTTATCTAATTTGATAAACTGAACAAAAAT CAGGATGCCAATGTGCTTGTGGGATCAAAGAAAGAGAGACTGGATATCAAGGCGGCTTTGTCAAACTCATTTGGTTTTGG TGGCCACAACTCTTCAATCATATTTGCCCCTTATAAGTGAAACATATTTCAAACGTATTACCTTACTTTCATTATAAAGA AGGTATTTGTGGGGTGTAAAGAATATATTTCCTTCATTTCTTTTCTGCTCTATTCTAAGACTTTCTTATCTTGCAGTTGC TGAGTGACCAGGCAATGTATCCCACTCACACCATCTCTTTGGTTTAGTGAAAATGGATGTGCTGTGAATTGCTTACTTGG ATGATCAGTAATGTCCAAACATTGATGAGATGACCCTCTAGAATCAAAACTTCCAGAGATTGTATGGTGCTTCCAGTGAG ATAGAGTTGAGTCTATCAGCTGCTGAAATCCCCTATCTAACCATGAATTACTAGAGTAGGAGTTGACGCTGATGTAACTG TTACACAACCCCTTGATGGAACTTGGACATTGTTTTATTGCCATATTCAAGATGAAGACATGAAGATAAATTGATTGTAG TGTTTTTTTTTTGAGCTGGCAATAGGTTAGATAACACTTTTTACTGGAGTTTAAGCCTTAGAGGGTGATTTCAATTTAGT GAGCAGTTTGTCTTCTGCAACGTGGATCTAGCCTCCAGATTTGTTTAATATCATACTGAGGATATGTGATAGCAATAGCT ATTAGATTAGATTCTGTGTTTTACCTCTACTGAGTGACCAACATTCAAAACCTATTCAGGTAATTTTCACACTGTCCTCT GACCTCTTGATGGTAGTTCTAGCCATTGCTTGTGTGAAACAGAAATTGAAGAATATAGAAATAGAGATGATTATTTGATG AGATCTTTAATATATCCACTTATAAG
CDS sequence (LotjaGi6g1v0221600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTTCATTGCTCTCCTCTTGCATGTCTCTCTCCCACCACCACTCTCGCCGCCGCCGGAACCTCCTCTCCAACTC CCAACTCACCTCTTTCAATCGCACGCCCACCACCAATCTCAACCCTCCGCCCCGCTCCGGTAAAGTAATGGCTGTAGCTT TGCAACCTGCTCAAGAAGTTACAACAAGGAGAAAACCTCCTGTAAAGGAAAGACGAGTAGTTGTGACTGGTTTGGGCGTG GTTACATCACTTGGTCATGATCCAGATGTCTTCTACAATAATTTACTTGATGGTGTCAGTGGGATAAGTGAGATTGATAG ATTTGACTGCGCTGAGTTTCCAACGAGGATTGCTGGGGAGATCAAGTCTTTCTCGACTGATGGCTGGGTAGTACCAAAAC TTTCAAAGAGGATGGATAAATTTATGCTGTATCTGCTGACAGCGGGAAAAAAGGCCTTGGTTGACGGTGGAATTACTGAA GATGTAATGGATGAGTTAAATAAAAGAAAATGTGGTGTTTTGATTGGATCAGCAATGGGTGGCATGCAGGTTTTCCATGA TGCTATTGAAGCTTTACGAATCTCATATAAGAAGATGAATCCTTTCTGTGTACCCTTTGCAACAACAAATATGGGCTCTG CCATGCTTGCAATGGATCTGGGCTGGATGGGCCCTAATTATTCAATCTCTACAGCGTGTGCTACAAGTAATTTTTGTATA TTGAATGCTGCAAACCATATCATTAGAGGTGAAGCTGACGTGATGCTTTGTGGTGGCTCAGATGCTGCTATAATACCAAT TGGTTTGGGAGGTTTTGTAGCATGCAGGGCACTCTCACAGAGAAATAGTGATCCAACCAAAGCTTCACGCCCATGGGATA CTAATCGTGATGGATTTGTCATGGGAGAAGGGGCTGGAGTTTTGCTTTTAGAAGAATTAGAGCATGCTAAGAAAAGGGGT GCAAACATATATGCAGAGTTTCTTGGTGGAAGCTTCACGTGTGATGCATATCATATCACTGAGCCACGTCCTGATGGAGG TGGTGTTAAACTTTGCATTGAAAAGGCTTTAGCTCATTCTGGAGTGTCAAGGGAGGATGTGAACTACATAAATGCACATG CCACATCCACACCGGCTGGAGATCTTAAGGAGTACCAGGCTCTGATTCATTGTTTTGGCCAAAATCCTGAGCTAAGAGTG AATTCAACAAAATCTATGATTGGTCATCTACTAGGGGCAGCTGGTGGTGTGGAAGCCGTCGCAACAGTACAGGCAATAAG GACAGGGTGGGTTCATCCTAATATCAATCTAGAAAACCCCGACAAAGGAGTGGATGCCAATGTGCTTGTGGGATCAAAGA AAGAGAGACTGGATATCAAGGCGGCTTTGTCAAACTCATTTGGTTTTGGTGGCCACAACTCTTCAATCATATTTGCCCCT TATAAGTGA
Protein sequence (LotjaGi6g1v0221600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSLLSSCMSLSHHHSRRRRNLLSNSQLTSFNRTPTTNLNPPPRSGKVMAVALQPAQEVTTRRKPPVKERRVVVTGLGV VTSLGHDPDVFYNNLLDGVSGISEIDRFDCAEFPTRIAGEIKSFSTDGWVVPKLSKRMDKFMLYLLTAGKKALVDGGITE DVMDELNKRKCGVLIGSAMGGMQVFHDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCI LNAANHIIRGEADVMLCGGSDAAIIPIGLGGFVACRALSQRNSDPTKASRPWDTNRDGFVMGEGAGVLLLEELEHAKKRG ANIYAEFLGGSFTCDAYHITEPRPDGGGVKLCIEKALAHSGVSREDVNYINAHATSTPAGDLKEYQALIHCFGQNPELRV NSTKSMIGHLLGAAGGVEAVATVQAIRTGWVHPNINLENPDKGVDANVLVGSKKERLDIKAALSNSFGFGGHNSSIIFAP YK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 16 | 46 | 31 | - | – | |
| MobiDBLite | 23 | 44 | 22 | - | – | |
| PANTHER | 41 | 482 | 442 | 2.5E-278 | – | |
| PANTHER | 41 | 482 | 442 | 2.5E-278 | ||
| Gene3D | 57 | 324 | 268 | 1.0E-79 | ||
| Pfam | 71 | 316 | 246 | 5.5E-59 | ||
| SUPERFAMILY | 71 | 321 | 251 | 4.97E-67 | ||
| TIGRFAM | 71 | 478 | 408 | 3.8E-156 | ||
| SMART | 73 | 481 | 409 | 2.3E-15 | ||
| CDD | 83 | 478 | 396 | 0.0 | – | |
| ProSitePatterns | 224 | 240 | 17 | - | ||
| SUPERFAMILY | 284 | 480 | 197 | 1.98E-64 | ||
| Pfam | 324 | 437 | 114 | 1.1E-33 | ||
| Gene3D | 326 | 470 | 145 | 4.1E-46 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Fatty acid biosynthetic process | The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. | ||
| Molecular function | Transferase activity, transferring acyl groups other than amino-acyl groups | Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi6g1v0221600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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