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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0223700 |
| Transcript ID | LotjaGi6g1v0223700.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G43790.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FG85|PP415_ARATH Pentatricopeptide repeat-containing protein At5g43790; TrEMBL-Plants: tr|A0A0R0HZ02|A0A0R0HZ02_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0223700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:52870693..52872468) extracted from Lotus japonicus Gifu genome v1.2.
AACCCCATATTTAACCACCCAATTCTCAAACTGTTGCAAAAATGCCATAGCCTCAACACTCTTAAGCAAGTCCATGCTCA AATGCTAACAACTGGTCTTGCACTTCATACATACTGTCTCAGTCACCTCCTTACCATATCTTCCAAGCTTGCCTCAACCT ATGCTCTCACCATCTTTAGCTCTATCCCAAACCCCACAGTTTTCCTCTACAACACACTCATTTCTTCCTTTACTAGTCAT AGTAGCCAAATCCATCTAGCATTCTCGCTTTATAATCGCATTCTCGCTCACAAGACCCTCCAACCCAATAGCTTCACTTT CCCCTCGCTCTTCAAGGCTTGTTGTGGCTCTGGCCATTGGTTTCAATATGGTCCGCCCCTCCACGCCCATGTTTTGAAGT TCCTTGAACCGCCGTATGATCACTTTGTTCAAGCGTCGCTGCTGAATTTCTATGCTAAATATGGGAGGCTGTGTGTGTCT AGATGTTTATTTGATCAAATTAGTGAACCTGACTTGGCCACATGGAATACCCTGTTGGCTGCTTATGCACGCAGTGCGAG TCATAGTTACTCAACCAGTTTAGAAGATGCTGATTTGTCCTTAGAGGCGTTGTATTTGTTCTGTGACATGCAGATGTCTC GAAGAAGGCCTAATGAAGTGACACTTGTGGCATTGATTAGTGCTTGTTCTAATTTAGGTGCTCTTAGTCAAGGGGTTTGG ACTCATTGTTATTTGCTGAGGAACAATCTTAAGTTGAATCGGTTTGTGGGAACTGCACTGGTGGATATGTATTCCAAATG TGGCTGTCTCAATTTAGCCTGTCAGTTGTTTGATCAGTTGACTGATAGGGATACATTTTGCTACAATGCCATGATTGGGG GTTTTGCAGTTCATGGTCATGGGAATCAAGCACTTGAACTTTATAGAAAGATGAAATTTGAGGGCTTAGTTCCTGATAGT GCAACTTTTGTTGTTTCCATGTTTGCCTGCTCTCATGTTGGACTGGTAGAGGAAGGCTTGGAGATTTTTGAGTCCATGAA GAAGGTTTATGGGATGGAACCAAAACTTGAGCATCATGGATGCCTAATCGATATTCTGGGTCGAGCTGGGAGATTAAAGG AGGCAGAGGAGAGGTTAAAAGATATGCCCATGAAGCCCAATGCAATTTTATGGAGGTCTTTACTTGGGGCTGCAAGAATT CATGGGAATTTAGAGGTGGGGGAAGTTGCTCTAAAACACTTAGTAGAGTTGGAACCAGAAACTAGTGGAAACTATGTGCT CCTGTCTAATATGTATGCTAGCATTGCTAGGTGGAATGATGTGAAGAGAGTGAGGAAGCTGATGAAATCTCATGGGGTTA ACAAGTTGCCAGGATTTAGCCTAGTGGAGATTGATGGTGCCATGCATGAGTTTCTCACAAGTGACAAAACTCATCCATTT TCAAAAGAAATATATTTGAAAATTGGGGATATTAATAGAAGACTACAAGAATTTGGTCACAATCCAAGAACATCAGAGGT TTTGTTTGATGTGGAAGAAGAAGAAAAGGAAGATGCCCTTTCTTACCACAGTGAAAGACTAGCCATAGCATTTGCTCTTA TAGCATCACCTTCAAGTTTGCCCATAAGAATTATTAAAAACCTTCGAGTTTGTGGGGATTGCCATGTGTTTACCAAGCTA ATATCAGCAGCGTATCAAAGAGATATTATAGTCAGAGACCGAAATCGGTTTCACCATTTTAAGGATGGGAGTTGCTCTTG TCTAGATTACTGGTGA
CDS sequence (LotjaGi6g1v0223700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTAACAACTGGTCTTGCACTTCATACATACTGTCTCAGTCACCTCCTTACCATATCTTCCAAGCTTGCCTCAACCTA TGCTCTCACCATCTTTAGCTCTATCCCAAACCCCACAGTTTTCCTCTACAACACACTCATTTCTTCCTTTACTAGTCATA GTAGCCAAATCCATCTAGCATTCTCGCTTTATAATCGCATTCTCGCTCACAAGACCCTCCAACCCAATAGCTTCACTTTC CCCTCGCTCTTCAAGGCTTGTTGTGGCTCTGGCCATTGGTTTCAATATGGTCCGCCCCTCCACGCCCATGTTTTGAAGTT CCTTGAACCGCCGTATGATCACTTTGTTCAAGCGTCGCTGCTGAATTTCTATGCTAAATATGGGAGGCTGTGTGTGTCTA GATGTTTATTTGATCAAATTAGTGAACCTGACTTGGCCACATGGAATACCCTGTTGGCTGCTTATGCACGCAGTGCGAGT CATAGTTACTCAACCAGTTTAGAAGATGCTGATTTGTCCTTAGAGGCGTTGTATTTGTTCTGTGACATGCAGATGTCTCG AAGAAGGCCTAATGAAGTGACACTTGTGGCATTGATTAGTGCTTGTTCTAATTTAGGTGCTCTTAGTCAAGGGGTTTGGA CTCATTGTTATTTGCTGAGGAACAATCTTAAGTTGAATCGGTTTGTGGGAACTGCACTGGTGGATATGTATTCCAAATGT GGCTGTCTCAATTTAGCCTGTCAGTTGTTTGATCAGTTGACTGATAGGGATACATTTTGCTACAATGCCATGATTGGGGG TTTTGCAGTTCATGGTCATGGGAATCAAGCACTTGAACTTTATAGAAAGATGAAATTTGAGGGCTTAGTTCCTGATAGTG CAACTTTTGTTGTTTCCATGTTTGCCTGCTCTCATGTTGGACTGGTAGAGGAAGGCTTGGAGATTTTTGAGTCCATGAAG AAGGTTTATGGGATGGAACCAAAACTTGAGCATCATGGATGCCTAATCGATATTCTGGGTCGAGCTGGGAGATTAAAGGA GGCAGAGGAGAGGTTAAAAGATATGCCCATGAAGCCCAATGCAATTTTATGGAGGTCTTTACTTGGGGCTGCAAGAATTC ATGGGAATTTAGAGGTGGGGGAAGTTGCTCTAAAACACTTAGTAGAGTTGGAACCAGAAACTAGTGGAAACTATGTGCTC CTGTCTAATATGTATGCTAGCATTGCTAGGTGGAATGATGTGAAGAGAGTGAGGAAGCTGATGAAATCTCATGGGGTTAA CAAGTTGCCAGGATTTAGCCTAGTGGAGATTGATGGTGCCATGCATGAGTTTCTCACAAGTGACAAAACTCATCCATTTT CAAAAGAAATATATTTGAAAATTGGGGATATTAATAGAAGACTACAAGAATTTGGTCACAATCCAAGAACATCAGAGGTT TTGTTTGATGTGGAAGAAGAAGAAAAGGAAGATGCCCTTTCTTACCACAGTGAAAGACTAGCCATAGCATTTGCTCTTAT AGCATCACCTTCAAGTTTGCCCATAAGAATTATTAAAAACCTTCGAGTTTGTGGGGATTGCCATGTGTTTACCAAGCTAA TATCAGCAGCGTATCAAAGAGATATTATAGTCAGAGACCGAAATCGGTTTCACCATTTTAAGGATGGGAGTTGCTCTTGT CTAGATTACTGGTGA
Protein sequence (LotjaGi6g1v0223700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLTTGLALHTYCLSHLLTISSKLASTYALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTF PSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLAAYARSAS HSYSTSLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKC GCLNLACQLFDQLTDRDTFCYNAMIGGFAVHGHGNQALELYRKMKFEGLVPDSATFVVSMFACSHVGLVEEGLEIFESMK KVYGMEPKLEHHGCLIDILGRAGRLKEAEERLKDMPMKPNAILWRSLLGAARIHGNLEVGEVALKHLVELEPETSGNYVL LSNMYASIARWNDVKRVRKLMKSHGVNKLPGFSLVEIDGAMHEFLTSDKTHPFSKEIYLKIGDINRRLQEFGHNPRTSEV LFDVEEEEKEDALSYHSERLAIAFALIASPSSLPIRIIKNLRVCGDCHVFTKLISAAYQRDIIVRDRNRFHHFKDGSCSC LDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 192 | 192 | - | – | |
| Gene3D | 10 | 96 | 87 | 3.9E-9 | ||
| Pfam | 38 | 88 | 51 | 1.7E-8 | ||
| ProSiteProfiles | 39 | 75 | 37 | 7.048 | ||
| ProSiteProfiles | 76 | 111 | 36 | 5.514 | ||
| PANTHER | 101 | 212 | 112 | 3.9E-79 | – | |
| Gene3D | 102 | 234 | 133 | 6.3E-14 | ||
| ProSiteProfiles | 113 | 147 | 35 | 5.656 | ||
| ProSiteProfiles | 191 | 225 | 35 | 6.862 | ||
| Phobius | 193 | 213 | 21 | - | – | |
| PANTHER | 209 | 422 | 214 | 3.9E-79 | – | |
| Phobius | 214 | 564 | 351 | - | – | |
| ProSiteProfiles | 226 | 256 | 31 | 6.906 | ||
| Pfam | 231 | 255 | 25 | 0.29 | ||
| Pfam | 257 | 302 | 46 | 8.5E-11 | ||
| ProSiteProfiles | 257 | 291 | 35 | 11.762 | ||
| TIGRFAM | 259 | 293 | 35 | 1.7E-7 | ||
| Gene3D | 275 | 437 | 163 | 8.4E-26 | ||
| ProSiteProfiles | 292 | 322 | 31 | 7.585 | ||
| ProSiteProfiles | 328 | 358 | 31 | 6.621 | ||
| Pfam | 334 | 356 | 23 | 0.093 | ||
| ProSiteProfiles | 394 | 428 | 35 | 6.577 | ||
| Pfam | 430 | 554 | 125 | 1.5E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi6g1v0223700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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