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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0226700 |
| Transcript ID | LotjaGi6g1v0226700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mechanosensitive ion channel family protein; TAIR: AT5G12080.1 mechanosensitive channel of small conductance-like 10; Swiss-Prot: sp|Q9LYG9|MSL10_ARATH Mechanosensitive ion channel protein 10; TrEMBL-Plants: tr|A0A0B2RXT1|A0A0B2RXT1_GLYSO Mechanosensitive ion channel protein 10; Found in the gene: LotjaGi6g1v0226700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:53266999..53271648) extracted from Lotus japonicus Gifu genome v1.2.
TGAAGACTTAGTTCTCATCCCACATGGCTAAATAGTATACTAATATCAGTATGTCATGTCAATCTCCATTGCTTTTAGTC AATATTTTTCATAAATTCTTACTATTTTATAATAGAACATTGTTCACATTCTCCTTTTTTATTTCCAACTAAAAGGGTGC ACTCTGCAATTTCAATGGCACCGCATTAACACCATTTCAGTCTTGTTTGTCGGTCACTGTCAGAAATAATCACCTTCATC TGCCATTCAAATGAACTTCAAACATGCACAAACAAAACCACGTTTCTCAATTGGAAACATATCTTTGTCTACTTTCCTCT TTCTGCATCTTCCAACATTTTCTTCTTTCGAAAAAAAACCAAAAAAATCTACTGTCTGATACTCATAAATTCCCAACCAA GCAAAGAATCTAGTATACAAACTTGTAGGGTCTTCACAGATTCTTGGAATGTTTCAAACTTTCCGGATAAGGGTAATCAT TGTTCTGCTGATTGAAATCTAAGGACTAGCATTTGGAGAATCTAGAAAGCATTCCAACTTGTCATGGAAGAAGAACAAGA AGGAGTGGTAGACAAGAAAAGGACAAAGAACGAGGTTGTTCTCCGCATTTCGGACACCGAAGATGCAGCTTTGTATGCTC GTAGAGAATCTAGAGGGTCTCCAGTTGCTGAAAGCACTTCTTCTTACTCTCCTCAGCTCAATACCCAGATGGGTACTTCA CCAACAAAAGGGTTCAGAGATTCTCAAGTTGAGCTTGAGAATCTCAGAAGCAGGGGTCAAGTTTCCACTGAGTTGGTGAC AACCACACGCAGCTTTTTGGGTCGGTCGGAGTTTTCGAAACCAAAGTCCAGAATGGTGGAACCACCATGTCCCAGAGATG TGAGCTTTGTGGAAGAGAAGACTCAGATTATTAAGAGTTCCAATTCATCTGTAAGGAGTTCTCCTAACAAGAAGGTTTCA GGTACTTCTCCAAGGGATGTTGCTGATGGAACTGTTGTCACTCCAAGAACTCCATTGATTGGGACTCCAAGGGAAGAAGA GGAAGATGATGATGAAGAAGTGTACAAGATTGCACATGTTGAAGTGAGTAAGAGAACTGGTAAGAAATGGAAACTTATGG CCTGCACTGAGTTATCTGTTTTTGTTTGCATTCTGGGATTTTTTATTGCAAGCTTGTTGGTCCATAAGTTGCAACATAAG CAAATTTGGGGTTTGGAGCTCTGGAAATTGTGTGTGTTGGCTTTGGTTGTCATCTGTGGTAGACTGGTTACTGAGTGGTT TATGAATGTTCTGGTTTTCTTGATGGAAAGGAACTTCTTGTTTAAGAAGAAAGTTTTGTACTTTGTTTATGGTGTGAAGA AGAGTGTTCAGGCCTTTTTATGGTTAAGTTTGGTTCTTTTGGCATGGGGTCTACTCTTGGAACATGGAGTCAAGAGAACC AGAAAAGTTAAAAGGATTCTTAATTATATTACTAGGGCCCTTGCCTCTGGTCTTATTGGAGCAGCTATATGGTTAGCAAA AACATTTTTGATAAAGCTGTTATCTTCAAAATTCCAATCTACTAGGTTTTTTGACAGGGTACAAGAATCAATCTTTCACC AATACATTCTCAGGACTCTTTCTGGGCCACCTTTGATGGAGATGGCTGAAACAGTAGGCAAGAGTTCAAGTAGTGGCAGA CTCAGTTTTAAGACCATGGTTAGAGAGAATAAGAATGAAGGGAAGAAAGAACAAGTCATTGATGTAGATAGGCTCAAGAA AATGAAACAAGAGAAAGTTTCTGCTTGGACCATGAAAGGATTGATTAATGTGATCAGGAGCTCTGGGCTGTCTACCATCT CCTATACACCAGGGAGTGTTGATGAAGATGAGAGTGACCAGATAGATAATGAAATTACAAGTGAGTGGGAAGCGAAGGCT GCTGCTTATCGAATCTTCAAGAATGTAGCCAAGCCAGGAAACAAGTAAGTGTGTGTTTGGATACCAGTTGAGTGAACATT TTTCAGATTCTATTTTTTTTATTTGGAATTACTTCTTATTCTCATTAAACCCTCAAATTTACTAGGTACATTGAGAAGGA AGACCTCTTGCGCTTCATGAAAATTGAAGAAGTGGAAAGTGTTCTTCCCCTATTTGAAGGGGCAGTTGAGACTGGAAGAA TTAAGAGGAAGTCTCTAAAGAACTGGCTGGTAAAACTTCTTATAATACTCTAAATTTCTTTACTTTTATCAGAAGCTCTA GACTATGCTTATTGAGCATTCACTTTATCCTAAGAATTAGTGACAATATATCAGGTTCCAATTTGTTTCTTTTAATTCTT GCTGCCCTGAAATTTATGGAACATGTAGATAATTATAATGATCCAAAAGATAGTTTAATCCAAGAGGGATTTGTCAAATC CACTACACATGGCCTAGCACATATAGATATCCTTGACATCATGCATATGTTTTTCTTACAACTATCAAGTGATTAGTATT ACTCAGTTCATGTGACAAGCATGATACTCACAATCACATATTTTTCTTGTTTGCAGGTGAAAGTCTACTTTGAACGCAGA TCATTGGTACATTCACTAAATGATACCAATACAGCCGTTGATGACTTGAATAAGCTTGCTTCTGTAGTTGTCCTTGTTGT GATCCTTATTGTGTGGTTACTTCTAATGGGATTCTTAACAACCCAAGTTCTTGTCTTCATTTCCTCCCAGCTTTTACTTG TGGTGTTTATTTTTGGCAACACAGCTAAGACTGTATTTGAAGCTATTATATTTGTTTTTGTGATGCACCCGTATGATGTT GGTGATCGCTGTGTCATTGATGGTGTTCAGGTAATTTTCAACTCTAACAGCTCTCTTAACTTCAACATGAAAAGATGTAT CTAACTGAAACCTTTCACAGATGATTGTAGAAGAGATGAACATACTGTCAACAGTCTTTTTGAGATATGACAATGAAAAG ATATTTTACCCAAATTCAGTTTTGTCAACCAAGCCAATCAGTAACTTCTACAGGAGTCCAGAAATGAGTGATTCGGTCGA ATTTGCTGTTGATGTTTCAACTTCAATAGAAAAGATTGGAGCTTTAAAGGCTAAGTTAAAAGCGTATGTTTTTACTATGC TCTAGCTCCAATTTTTACACTTAGTTGGATTTATTATGACTTTCTCCCATTTGCAAAGTAATTTAGTTCAATTATTCCTT GAATCAGAGTTTAATTAAAAAACAATACTTCTGTTATCTATATCCTTGAATGAGTTCTAGTAAAAAAAAGGTGGGGTGAT ATGGATTTGAAACCCGTAGTAGACCTAGATGGTTACTTTTTTTCTTAGAATCAATTCTGAAACTCAAAAGCTACTCAAAC AAGCTTATCCTCAAAACTGATCCTGACTTTAAAATCAGTTGTAGAAGAATTTTCAAACATGCACTTAGTATACAATTACA ATGCTTATGAATACCAGGTCTAAATTCATGATCTTTCTTTTTATTGGTATGGAGCAGAACTGCAGAAGATTGAACATCAG TTTTTACTTTTCTGGTATAGTTTATTACTTATACATCTTTTGGTGTTGTTTGTTTAACAAACATAGGTATGTGACCACCT GTACAAAACTGGTTTTGCTATGTGCTGGAGTTGACTGATTTGTTTATACATTATCTTCATTTTTGTTCTGTATTTCAACT TGATATGTTTGTATAAAATTTTCAGATACTTGGATAGTAAGCCTCAACACTGGCGTCCGAACCACAGTGTAATTGTTAAG GATATTGAGAACGTAAACAAGATGAAAATGGGTCTATATGTTACTCACACCATCAATTTTCAGAATTATGGGGATAAGAA CAGCCGAAGATCTGATTTAGTCCTGGAGTTAAAGAAAAGTCTTGAAGATCTCAGTATTAAATATCATCTGCTGCCACAAG AGGTTCATCTCAGTAAAGTAAAATCCGAAGACTCAATGGTGCGAATAGAAAGAGCTTCAAGATGAAGAGTTCAAGGATGA CCTTTCATCATGGTTCATCTCAGTTATGCAGCATTAGTCCTTGACTCATAGTTTCTCCCAATATCATTCCAGTATTGAAT TGTGAAAATTTGAGATCAAAGATGGTGTGACTAACTAATGATGTGGTTATTTGGATACCGGTTGAATGCAACATGAACGG AGTTTCATCACATTAAATAAGAAGAGTTCTGTTCAATTTTTATCTTGAACTGAGTGCTAATGTCCGTCTGAAGTGGTGCA AACGGGTAAACATAGCCGAGTTGCAAGAAAAAAAGTGCATCTAGTTTATGCACTCATTGTGCTTTTGTTTTAAGTTAATG AGCTCATAGGGGCCAAGAAAAATGGAGTTTAATGGCATTGTTTAGTAATGAGGACTGCATCATGAGGTTCCTTTGTTTAC TTTCTTAAATGAACAAAATTTGTGTCATTCTTTTTGTACTCTTGTAAAATCAGCAGGTCTCAACTTGCAAATTGCATAAA GAATGCTAGTTGCCAAATAATAAAGAAAAGGGCATTAAAAAAAAAAAGGAATGGTGGTGCAGACAGAAGTTCAAAGTTTA AGCACATGATTTATTTTTCTTCGTATTTTATGTTTGTTAGTTCAAAGTTTAAGCACGTGACGTGTATTAGTTACAAAGAA TCACGAGGAG
CDS sequence (LotjaGi6g1v0226700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAAGAACAAGAAGGAGTGGTAGACAAGAAAAGGACAAAGAACGAGGTTGTTCTCCGCATTTCGGACACCGAAGA TGCAGCTTTGTATGCTCGTAGAGAATCTAGAGGGTCTCCAGTTGCTGAAAGCACTTCTTCTTACTCTCCTCAGCTCAATA CCCAGATGGGTACTTCACCAACAAAAGGGTTCAGAGATTCTCAAGTTGAGCTTGAGAATCTCAGAAGCAGGGGTCAAGTT TCCACTGAGTTGGTGACAACCACACGCAGCTTTTTGGGTCGGTCGGAGTTTTCGAAACCAAAGTCCAGAATGGTGGAACC ACCATGTCCCAGAGATGTGAGCTTTGTGGAAGAGAAGACTCAGATTATTAAGAGTTCCAATTCATCTGTAAGGAGTTCTC CTAACAAGAAGGTTTCAGGTACTTCTCCAAGGGATGTTGCTGATGGAACTGTTGTCACTCCAAGAACTCCATTGATTGGG ACTCCAAGGGAAGAAGAGGAAGATGATGATGAAGAAGTGTACAAGATTGCACATGTTGAAGTGAGTAAGAGAACTGGTAA GAAATGGAAACTTATGGCCTGCACTGAGTTATCTGTTTTTGTTTGCATTCTGGGATTTTTTATTGCAAGCTTGTTGGTCC ATAAGTTGCAACATAAGCAAATTTGGGGTTTGGAGCTCTGGAAATTGTGTGTGTTGGCTTTGGTTGTCATCTGTGGTAGA CTGGTTACTGAGTGGTTTATGAATGTTCTGGTTTTCTTGATGGAAAGGAACTTCTTGTTTAAGAAGAAAGTTTTGTACTT TGTTTATGGTGTGAAGAAGAGTGTTCAGGCCTTTTTATGGTTAAGTTTGGTTCTTTTGGCATGGGGTCTACTCTTGGAAC ATGGAGTCAAGAGAACCAGAAAAGTTAAAAGGATTCTTAATTATATTACTAGGGCCCTTGCCTCTGGTCTTATTGGAGCA GCTATATGGTTAGCAAAAACATTTTTGATAAAGCTGTTATCTTCAAAATTCCAATCTACTAGGTTTTTTGACAGGGTACA AGAATCAATCTTTCACCAATACATTCTCAGGACTCTTTCTGGGCCACCTTTGATGGAGATGGCTGAAACAGTAGGCAAGA GTTCAAGTAGTGGCAGACTCAGTTTTAAGACCATGGTTAGAGAGAATAAGAATGAAGGGAAGAAAGAACAAGTCATTGAT GTAGATAGGCTCAAGAAAATGAAACAAGAGAAAGTTTCTGCTTGGACCATGAAAGGATTGATTAATGTGATCAGGAGCTC TGGGCTGTCTACCATCTCCTATACACCAGGGAGTGTTGATGAAGATGAGAGTGACCAGATAGATAATGAAATTACAAGTG AGTGGGAAGCGAAGGCTGCTGCTTATCGAATCTTCAAGAATGTAGCCAAGCCAGGAAACAAGTACATTGAGAAGGAAGAC CTCTTGCGCTTCATGAAAATTGAAGAAGTGGAAAGTGTTCTTCCCCTATTTGAAGGGGCAGTTGAGACTGGAAGAATTAA GAGGAAGTCTCTAAAGAACTGGCTGGTGAAAGTCTACTTTGAACGCAGATCATTGGTACATTCACTAAATGATACCAATA CAGCCGTTGATGACTTGAATAAGCTTGCTTCTGTAGTTGTCCTTGTTGTGATCCTTATTGTGTGGTTACTTCTAATGGGA TTCTTAACAACCCAAGTTCTTGTCTTCATTTCCTCCCAGCTTTTACTTGTGGTGTTTATTTTTGGCAACACAGCTAAGAC TGTATTTGAAGCTATTATATTTGTTTTTGTGATGCACCCGTATGATGTTGGTGATCGCTGTGTCATTGATGGTGTTCAGA TGATTGTAGAAGAGATGAACATACTGTCAACAGTCTTTTTGAGATATGACAATGAAAAGATATTTTACCCAAATTCAGTT TTGTCAACCAAGCCAATCAGTAACTTCTACAGGAGTCCAGAAATGAGTGATTCGGTCGAATTTGCTGTTGATGTTTCAAC TTCAATAGAAAAGATTGGAGCTTTAAAGGCTAAGTTAAAAGCATACTTGGATAGTAAGCCTCAACACTGGCGTCCGAACC ACAGTGTAATTGTTAAGGATATTGAGAACGTAAACAAGATGAAAATGGGTCTATATGTTACTCACACCATCAATTTTCAG AATTATGGGGATAAGAACAGCCGAAGATCTGATTTAGTCCTGGAGTTAAAGAAAAGTCTTGAAGATCTCAGTATTAAATA TCATCTGCTGCCACAAGAGGTTCATCTCAGTAAAGTAAAATCCGAAGACTCAATGGTGCGAATAGAAAGAGCTTCAAGAT GA
Protein sequence (LotjaGi6g1v0226700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEEQEGVVDKKRTKNEVVLRISDTEDAALYARRESRGSPVAESTSSYSPQLNTQMGTSPTKGFRDSQVELENLRSRGQV STELVTTTRSFLGRSEFSKPKSRMVEPPCPRDVSFVEEKTQIIKSSNSSVRSSPNKKVSGTSPRDVADGTVVTPRTPLIG TPREEEEDDDEEVYKIAHVEVSKRTGKKWKLMACTELSVFVCILGFFIASLLVHKLQHKQIWGLELWKLCVLALVVICGR LVTEWFMNVLVFLMERNFLFKKKVLYFVYGVKKSVQAFLWLSLVLLAWGLLLEHGVKRTRKVKRILNYITRALASGLIGA AIWLAKTFLIKLLSSKFQSTRFFDRVQESIFHQYILRTLSGPPLMEMAETVGKSSSSGRLSFKTMVRENKNEGKKEQVID VDRLKKMKQEKVSAWTMKGLINVIRSSGLSTISYTPGSVDEDESDQIDNEITSEWEAKAAAYRIFKNVAKPGNKYIEKED LLRFMKIEEVESVLPLFEGAVETGRIKRKSLKNWLVKVYFERRSLVHSLNDTNTAVDDLNKLASVVVLVVILIVWLLLMG FLTTQVLVFISSQLLLVVFIFGNTAKTVFEAIIFVFVMHPYDVGDRCVIDGVQMIVEEMNILSTVFLRYDNEKIFYPNSV LSTKPISNFYRSPEMSDSVEFAVDVSTSIEKIGALKAKLKAYLDSKPQHWRPNHSVIVKDIENVNKMKMGLYVTHTINFQ NYGDKNSRRSDLVLELKKSLEDLSIKYHLLPQEVHLSKVKSEDSMVRIERASR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 196 | 196 | - | – | |
| PIRSF | 1 | 771 | 771 | 5.3E-211 | ||
| PANTHER | 8 | 768 | 761 | 0.0 | – | |
| PANTHER | 8 | 768 | 761 | 0.0 | – | |
| MobiDBLite | 31 | 64 | 34 | - | – | |
| MobiDBLite | 39 | 64 | 26 | - | – | |
| MobiDBLite | 124 | 165 | 42 | - | – | |
| MobiDBLite | 124 | 140 | 17 | - | – | |
| Phobius | 197 | 214 | 18 | - | – | |
| TMHMM | 197 | 216 | 20 | - | – | |
| Phobius | 215 | 225 | 11 | - | – | |
| Phobius | 226 | 254 | 29 | - | – | |
| TMHMM | 231 | 253 | 23 | - | – | |
| Phobius | 255 | 273 | 19 | - | – | |
| Phobius | 274 | 293 | 20 | - | – | |
| TMHMM | 274 | 296 | 23 | - | – | |
| Phobius | 294 | 304 | 11 | - | – | |
| Phobius | 305 | 325 | 21 | - | – | |
| TMHMM | 311 | 333 | 23 | - | – | |
| Phobius | 326 | 541 | 216 | - | – | |
| Pfam | 540 | 744 | 205 | 2.1E-21 | ||
| TMHMM | 542 | 564 | 23 | - | – | |
| Phobius | 542 | 562 | 21 | - | – | |
| Phobius | 563 | 573 | 11 | - | – | |
| TMHMM | 574 | 596 | 23 | - | – | |
| Phobius | 574 | 598 | 25 | - | – | |
| SUPERFAMILY | 590 | 649 | 60 | 7.19E-12 | ||
| Phobius | 599 | 773 | 175 | - | – | |
| Gene3D | 600 | 649 | 50 | 2.7E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0226700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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