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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0227000 |
| Transcript ID | LotjaGi6g1v0227000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING finger-like; TAIR: AT5G17600.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52; TrEMBL-Plants: tr|A0A072V858|A0A072V858_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi6g1v0227000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:53277670..53279249) extracted from Lotus japonicus Gifu genome v1.2.
CCTTCATCGAAAGATTTTTAAATTAACTTAGACTTCGCTTGAAAGAGCTCATTCGAACTTATATTATAACATAAACGCTT ATGTATGACTTTGTGAGAGCTTATGGCTCATAAGCTTTTTGATGAGCCTATAAATAAGAGTTTATGCTCATCTACAATTT ATTTGCAACTTATCTCAAATTAGCTTATGAATAAGTGTTTACACTATAATCGCTTAATTAAGTTGCTTACTGAAAGCACT CTTAAAACACATGAATACAATATCAATAAAAAAAGTGTAATTACTCTGTCATCTAACCCAATGGATAGGATTTGGCTCTG ATTTGTCTAGAGTTTCCAAAATATTCTTCACCAAAACCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT TCTTCTCCGATGGGTGATGTTCTGAGTCCCTTCACAATCACAACCCCTCCTCCACCATCTTCCCCATCAAACGAGAACAA CAGCATGGTCATACTATACTATGGTCTAGTGGTGGTGGGAACAGCAGCCATAGTGTTAGCCATCTACAACATCATCATCA TCAAACGCTGCCACAACCGGCGCCACTCTAATCAGCCACCACAGCCAAATAGTTTGGTTGAAGGGGTCCCTGATAGTGAA AGCAGGAGCTTTGACAACCCACATAGGAACTTGCTTTCAAGCTTCAAGTACAAGAAGGAAGTGATTTCAACAAAAGATTT AGAGGAACAACAACAAGGTGGGGTTGCTGGTGGCGGCGGCGGCGGTGGTGGTGATGATTATGATTGTGAATGCCCTGTTT GTTTATCAGTTTATGAAGAAGGGGAAGAGGTGAGGAAGCTGCCACGGTGCAAACACTCGTTCCATGCTCCTTGCATAGAC ATGTGGCTTTACTCTCACTTTGATTGCCCAATTTGCAGAACACCGGTTGCTGTTGGTCCTATGTGTCATGGTTTTCCAGC AGAGGATTCTCGTGGTGAATCTGATGGTGTCCCTGTTTGATGATTCTGGAAATGTTGTGGGGCCTGTTGTGTTGCTTATG GGATGAGACATTAATTGAGTGTACCACAGCTAGCTTCATCACCACACACTAGTCACTAGGTACTTTTGGAGTAATCCAGG GTTTAGATTAAGTTGGATAAGAAAATTGTTAGCTGTTGCTTATAATCCACAAGCACTTCATTTCATATTAAGTGTATGTA AGGATTTTTTTTTGGAAAGAAATACATGTTAATACGATTTAATTTTCCAGTTTTGATATATTCACATTTTCATTCTCTTA CGTATCATTTCAGCTCACTTTTTTTTTTCATTTCTATTTCTTTTTATTCTACAATATTGTCAATTATATCTCACATTTTC TCTCTTTTACTCTTATATCTCATTAGGAGGATGGGAATTCAATTATTTTCCTAAATATAATGCAGGCAAGTGATGCAGCA GCCACTGCCCTGAAGTCTGAATAGGACCCTGTTCTCTGATAATTAGTTAATTACTAATACTACTGAAGATGCTTCTGCCA TTTTTGACCAAAAAAAGATGCTTCTGCCATCAATTTTATAGTCTTCTGACCCGTTCGTGC
CDS sequence (LotjaGi6g1v0227000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGATGTTCTGAGTCCCTTCACAATCACAACCCCTCCTCCACCATCTTCCCCATCAAACGAGAACAACAGCATGGT CATACTATACTATGGTCTAGTGGTGGTGGGAACAGCAGCCATAGTGTTAGCCATCTACAACATCATCATCATCAAACGCT GCCACAACCGGCGCCACTCTAATCAGCCACCACAGCCAAATAGTTTGGTTGAAGGGGTCCCTGATAGTGAAAGCAGGAGC TTTGACAACCCACATAGGAACTTGCTTTCAAGCTTCAAGTACAAGAAGGAAGTGATTTCAACAAAAGATTTAGAGGAACA ACAACAAGGTGGGGTTGCTGGTGGCGGCGGCGGCGGTGGTGGTGATGATTATGATTGTGAATGCCCTGTTTGTTTATCAG TTTATGAAGAAGGGGAAGAGGTGAGGAAGCTGCCACGGTGCAAACACTCGTTCCATGCTCCTTGCATAGACATGTGGCTT TACTCTCACTTTGATTGCCCAATTTGCAGAACACCGGTTGCTGTTGGTCCTATGTGTCATGGTTTTCCAGCAGAGGATTC TCGTGGTGAATCTGATGGTGTCCCTGTTTGA
Protein sequence (LotjaGi6g1v0227000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDVLSPFTITTPPPPSSPSNENNSMVILYYGLVVVGTAAIVLAIYNIIIIKRCHNRRHSNQPPQPNSLVEGVPDSESRS FDNPHRNLLSSFKYKKEVISTKDLEEQQQGGVAGGGGGGGGDDYDCECPVCLSVYEEGEEVRKLPRCKHSFHAPCIDMWL YSHFDCPICRTPVAVGPMCHGFPAEDSRGESDGVPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| PANTHER | 23 | 183 | 161 | 5.3E-58 | – | |
| PANTHER | 23 | 183 | 161 | 5.3E-58 | – | |
| Phobius | 28 | 49 | 22 | - | – | |
| TMHMM | 28 | 50 | 23 | - | – | |
| Phobius | 50 | 196 | 147 | - | – | |
| MobiDBLite | 57 | 84 | 28 | - | – | |
| MobiDBLite | 60 | 74 | 15 | - | – | |
| Gene3D | 96 | 175 | 80 | 9.8E-20 | ||
| SUPERFAMILY | 127 | 175 | 49 | 8.99E-21 | – | |
| Pfam | 127 | 170 | 44 | 3.0E-11 | ||
| CDD | 127 | 170 | 44 | 2.0178E-16 | – | |
| SMART | 128 | 169 | 42 | 1.1E-6 | ||
| ProSiteProfiles | 128 | 170 | 43 | 12.032 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0227000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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