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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0231800 |
| Transcript ID | LotjaGi6g1v0231800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-40 repeat protein; TAIR: AT2G19520.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|O22607|MSI4_ARATH WD-40 repeat-containing protein MSI4; TrEMBL-Plants: tr|I1MH75|I1MH75_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0231800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54070428..54075564) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGACTCCAACTCCTCCATCTCAACAAGGCGTGGTGAAGAAGAAGGAAACCAGAGGCCGAAAGCCAAAGCCAAAGGA TGACAAGAAAGATGAGCATCAGAAAACCCCCAAGGAGACCAAGAAAGCTCAGCAACAACAGCACCATCATCAGCAGCAAC AGCAACAGCAACAATCTTCTGTGGATGAGAAGTACACACAATGGAAGTCTCTTGTTCCTGTCCTCTATGACTGGCTCGCC AACCACAACCTCGTTTGGCCCTCTCTCTCTTGCCGGTTCCTCTCTCTCTCTCTCTCTCTCTGTGTCTAGGGTTTTCAGTT TTTGATGATCTTGTTTTATTCTTGCTTGGTGTTGATTTTTTGACAGATGGGGTCCTCAGCTGGAGCAAGCTACCTACAAA AATCGCCAAAGGCTCTACCTTTCTGAGCAGGTAATGCCAATGCCCTTTTGATTCTGAACAGAAAGATTCAACCTTTTCAT GAAATTGATTGTGTTACTGCTTGTGTAATGTAATGCCAATGCCCTTTTGATTCTGGACAGAAAGATTCAACCTTTTCATG AAATTGATTGTGTATAATGTAATGTGAGTGTATTGAAATAGAGGGATTTGATTTTTTGTTTTTTGTTGTTGTAGACTGAT GGTAGCGTTCCGAATACTCTGGTGATTGCGAATTGTGAGGTTGTTAAGCCTAGGGTTGCAGCTGCTGAGCACATTTCTCA GGTGGGGTTTTGTTATCTTATGTGGATTATTGTTTGAATGATGTTAGTTTGATGTTTGAGATTCAATTAATCAGCTAGGA GTTGTTTTTTTCTTTCAGTTTAATGAGGAGGCGCGCTCCCCATTTGTGAAGAAGTACAAGACCATCATACATCCTGGCGA GGTATGCATGTTCACATCTTAGTTTCACACTGAATGACATACTGAGAAGTGGATTCATTTCAAGCATATATGAAGATGAA TTAATATTAACTCTGTTGTTTAATTTCCCTGGCTTTGATTTTTGAGATTTTGGCGAGATTTTTGTTTATTTATGGCTACC CATTAATGTTTATACTGCGTTGAATTTCATTATGCTGATGATAAGTGTGTTGCTGTTTGCTGGCTGATATGATCCTCTTG CTCCATTTTGTAGGTGAACAGAATTCGGGAACTGCCGCAGAGTTCTAGGATAGTAGCCACTCATACTGACAGTCCTGATG TAAGAACTTTACAGTTTGCTTTGCTCTGTTTATTCCTTGGAATTAGTTTGATTTCCTGGCTCTGTGGTTCCTTATTTGTA ACTCTTCAAATGTCAGGTCCTTATTTGGGATGTTGAAAGTCAGCCTAACCGCCATGCAGTCCTTGGAGCTACAAACTCTC GTCCGGATTTGGTATGACTGTTTGATTGAGCATTAATATTCAATGACATCTGTCTGTGTTGTTAAGTTCAAAATAATTTG TAACATGGGATTGAAATCATTAAGTAAAGCAGATGTACATGCTCCTATATTTTTCTTATGAGAAATAATATGTTTACATC TTTCTCAAAAATATGATCTTGTGATGTGAGTTAGATTCTGCTTTTGATAGCTCTCGGGCTAGACCTCCTATCACAAAGTT TTACCAGAGGAGGGGAAAAGAGAGCGTGTAAGTTAGTGGTTAGAGTGGTTAGAATAACAGACTTTGAGTGGAGGGAAAGT TAGTATTCAAATGTATAAATAGTGGAACTGTTATTCAGTTAGGTAGTTCGTTCCAGTTATTAGTTGTTTGGGAGAGAGTG AGTCTCTTGAAATACTCACCTGTATCTGCTTCTCTGATTCGTATTTGGGATTTAGGGTTCCTAATCAATAAAATTTCCCA ATTCATTTCTCCAATTTATCAGCTTCACTTTCGTTTAATCGCCTAGTGGTTAATTATTTCAGTTATTTGTGGGTGTGGCT CTATTGAACTTAGTGGGGTCACATTGTTGGGGCAAGAACAGGCCTTACATGCAAAAACTTGGAAAGTCAGATGGATATTA TCAAATTGACCTTTCCGCATTGAATTATGTGGCCCCGATCTTTAGTTTTTTCGAACTATTCATTATTAAAGAAGCTCCAT GTGCAACGTCATTGTTATCTTTTTGTTATTTGGCATGGTTGATGCTTCTTGATATATTCACATAGAACTTCTCTTGCAGA TTTTAACTGGACATATAGATAATGCAGAATTTGCTCTTGCGATGTGCCCAACTGAGCCCTATGTGCTTTCTGGAGGTTGT TATTAACTTTTTGTTTAAACTTCAGTTAGTTTTTTGTTTGTTTCAGATCGTGGTTATTTCTTCATGTGATTGTTCTATAT CTGAAAGCACCAAGTTACATTACAGGAAAGGATAAAACAGTAGTGTTGTGGAGTATTGAAGACCATGTAACATCTGCCTC AGACTCCAAATCTGCTGGGTCAATTATCAAAGGCGAAGGTTACGACAAGACTGCTGATGGCCCTTCTGTTGGACCACGAG GTATCTACCGTGGGCATGAAGATACTGTTGAAGATGTGACTTTTTGTCCTTCTAGGTAATTTGCATGGAACAATTTCATT CTTCCGTGCTTTTCTTCAATGAAGTAGATATTCTCATTTTACTGTTCACCTTACTTCAGTTGAAATTTAGGGTGTCCTTT ACTCATTCTGTTTCTTAACTTCATATTATTATTTAATGAGCTAGCTATACCTTTTCCAAGTTTGTCTTGAGAAGGGAGAG GAGCGGAGGGGCATGAAAATGTTCTATTTGTTTTTTTAATTTATGTTTTAGGGATCTAGTGTATTTGCACTATAATAGCA GCATGAGTTAAATTTGTACTTCATGAGACAACCATATCCTCCTGACATATCTATACATGCTGTAGTGCACAGGAGTTTTG TAGTGTTGGAGATGATTCCTGTCTCATCTTATGGGATGCACGTGTTGGTTGTAGTCCTGTGGTGAAGGTATATGCTTTAT ACCTCAATCATGTATTTAAGTTTGTTTTCTTTTATTATTCTTTTCATATAAGTATGAACTTGAAGGCATGTTTTTTTGTG AACAGAATACTTTTTTTAGCTCACTGTTTACTCACAAACTCATAAGGAGTGCATGACATTGTGGTTAAATTAACTGGGCA ACTATGTATCTATCTCTCAAGAGATCGCTATTCACTGTGAATTGTAATATCTTGTCTCATATATATACATATTTATTTAT TTATTTATTTCCCTCTCTGAATTTGGTTACAGGTTGAAAAAGCTCATGATGCTGATCTTCACTGTGTTGACTGGAATCCC CATGATGATAATCTGATTCTTACTGGGTATGTTCTGCTCTGGTGTAGTCAGCATTATCATTATTCAGCTACTATATATCT TGTTATTATGAGCAAATTGGTGACGGATCACATTCTCATTTGATTGGTCACCACATCTCTCCAGATCGGCAGATAATTCT GTTCGTATGTTTGATCGCCGCAATCTCACCTCTAATGGAGTTGGGGCACCTATTCATAAATTTGAGGGTCACAAAGCTGC TGTTCTCTGTGTTCAGGTAATTTCCTACATGCTTTCTTTTTCCTCATGAATTCTTCATGCCTCCTGGCGTTATATTATTG TAACGCTGTAACATATGCTAATCACTGCTTGTTTAATTCAGTGGTCTCCAGACAAAGCATCTGTATTTGGAAGTTCAGCA GAAGATGGTCTCTTAAACATCTGGGACTATGAGAAGGTGCAGTTTCAGTTGGATAGTGTGTCACTGCTTTCTTGAATCTT GCCACTAAGATGCCTAGTGTTGACGCCATTTGTTTTTGTTCTGTAATGCAGGTTGGTAAAAAGATCGAGCGAGCAGGAAA ATCAATAAATACTCCTCCAGGGTTGTTTTTCCAACATGCTGGTCATAGGTATGAAGCTATTGTCTCTTTGGTGCACTTAA ATATGCTTAATTTATTCTTACCACCTAGATCTGTAGCTGAGCTTGCTTTTTACTTAGATTATTTAAACTTCTCTTCAGGC CATTTTCTGAATCTGAACCTCATTTTTGCTCTTTATCTGATGTAGCTCCTAATTTTCTTATATTACACCTTTTTGGGGTT TTCTTGGTTGCTTATGTTGGTAATTATCTATTTTTAATATCTTCATCTGTAATTCCCCATCACATTTTGGTATCAACTTC TTGATAAAAATTTCTCAACATCGAATATAAATGGCATAAGATGTCTAATGATTTTACTTTGATCATAGATTCACGGTCTT GTAGTAGTATTTTTTCAGAATTCCTGATGAATACTTGAACTAATCTCTTAAGATATCACCAAGCTAGCGGTTGTATTGTG TAGCATTGTCATTCTCAGGAAGCTTTCATTAAACTGCTTCACTTTTGCCCTTGTGATTTTTTGATCCCATGTTGTGGAAG GCACATAACACTAGACTTTCTCTTAATCCAGGACTGATTATTTTGATTGTATTAACTTTTTTGCATCAAAATAATTTACT GGTCCCCCTCCTGTCATTATTGTTATTTAAAAATTTCTACTTTTGCAGAGACAAAGTAGTTGACTTCCACTGGAATGCAT ATGATCCATGGACGATTGTCAGTGTGTCTGATGACTGTGAAAGTACTGGTGGAGGGGGAACATTGCAGGTATGGATTTTG TTTTTTTTCCATCTTTTGATAGTAGAAAACAATTCCTTACATAATTTTCATACCATTGAATATGTTCCTTGTGGAAACAA CATATATCTGGGATGGCCAAATTTATTGGTGCAGTAGTGGCCTAGTGGGTAAATATAAATTTGTTGGAAACGACATATAT CTGCATCGGAATATCTATCTCAAATTAATGCATAACTAATATGAATATTGAGATCATATTAATCTTGGCCCCATTAGTTA CTGGTCAAAACAAATGGTCAATGGATCATTGGTTTAATGTCTGATCTGGTCACTGGTTCCAGTGCAGGTTTAACGATTGA AATGTGTTTATTGGCCTGTTTTTTTAACATAAATGCTTTTGGCTGATGCATTCATATGTATTTGTGCAGATATGGCGCAT GAGTGACCTGATCTACAGGCCAGAGGAGGAGGTTTTGGCAGAGCTTGAGAAATTTAAAGCTCATGTGGTGGCGTGTGCTT CAAAGTCTGAAAAATGA
CDS sequence (LotjaGi6g1v0231800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGACTCCAACTCCTCCATCTCAACAAGGCGTGGTGAAGAAGAAGGAAACCAGAGGCCGAAAGCCAAAGCCAAAGGA TGACAAGAAAGATGAGCATCAGAAAACCCCCAAGGAGACCAAGAAAGCTCAGCAACAACAGCACCATCATCAGCAGCAAC AGCAACAGCAACAATCTTCTGTGGATGAGAAGTACACACAATGGAAGTCTCTTGTTCCTGTCCTCTATGACTGGCTCGCC AACCACAACCTCGTTTGGCCCTCTCTCTCTTGCCGATGGGGTCCTCAGCTGGAGCAAGCTACCTACAAAAATCGCCAAAG GCTCTACCTTTCTGAGCAGACTGATGGTAGCGTTCCGAATACTCTGGTGATTGCGAATTGTGAGGTTGTTAAGCCTAGGG TTGCAGCTGCTGAGCACATTTCTCAGTTTAATGAGGAGGCGCGCTCCCCATTTGTGAAGAAGTACAAGACCATCATACAT CCTGGCGAGGTGAACAGAATTCGGGAACTGCCGCAGAGTTCTAGGATAGTAGCCACTCATACTGACAGTCCTGATGTCCT TATTTGGGATGTTGAAAGTCAGCCTAACCGCCATGCAGTCCTTGGAGCTACAAACTCTCGTCCGGATTTGATTTTAACTG GACATATAGATAATGCAGAATTTGCTCTTGCGATGTGCCCAACTGAGCCCTATGTGCTTTCTGGAGGAAAGGATAAAACA GTAGTGTTGTGGAGTATTGAAGACCATGTAACATCTGCCTCAGACTCCAAATCTGCTGGGTCAATTATCAAAGGCGAAGG TTACGACAAGACTGCTGATGGCCCTTCTGTTGGACCACGAGGTATCTACCGTGGGCATGAAGATACTGTTGAAGATGTGA CTTTTTGTCCTTCTAGTGCACAGGAGTTTTGTAGTGTTGGAGATGATTCCTGTCTCATCTTATGGGATGCACGTGTTGGT TGTAGTCCTGTGGTGAAGGTTGAAAAAGCTCATGATGCTGATCTTCACTGTGTTGACTGGAATCCCCATGATGATAATCT GATTCTTACTGGATCGGCAGATAATTCTGTTCGTATGTTTGATCGCCGCAATCTCACCTCTAATGGAGTTGGGGCACCTA TTCATAAATTTGAGGGTCACAAAGCTGCTGTTCTCTGTGTTCAGTGGTCTCCAGACAAAGCATCTGTATTTGGAAGTTCA GCAGAAGATGGTCTCTTAAACATCTGGGACTATGAGAAGGTTGGTAAAAAGATCGAGCGAGCAGGAAAATCAATAAATAC TCCTCCAGGGTTGTTTTTCCAACATGCTGGTCATAGAGACAAAGTAGTTGACTTCCACTGGAATGCATATGATCCATGGA CGATTGTCAGTGTGTCTGATGACTGTGAAAGTACTGGTGGAGGGGGAACATTGCAGATATGGCGCATGAGTGACCTGATC TACAGGCCAGAGGAGGAGGTTTTGGCAGAGCTTGAGAAATTTAAAGCTCATGTGGTGGCGTGTGCTTCAAAGTCTGAAAA ATGA
Protein sequence (LotjaGi6g1v0231800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
METPTPPSQQGVVKKKETRGRKPKPKDDKKDEHQKTPKETKKAQQQQHHHQQQQQQQQSSVDEKYTQWKSLVPVLYDWLA NHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIH PGEVNRIRELPQSSRIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHIDNAEFALAMCPTEPYVLSGGKDKT VVLWSIEDHVTSASDSKSAGSIIKGEGYDKTADGPSVGPRGIYRGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG CSPVVKVEKAHDADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTSNGVGAPIHKFEGHKAAVLCVQWSPDKASVFGSS AEDGLLNIWDYEKVGKKIERAGKSINTPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLI YRPEEEVLAELEKFKAHVVACASKSEK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 61 | 61 | - | – | |
| PANTHER | 14 | 502 | 489 | 5.0E-301 | – | |
| PANTHER | 14 | 502 | 489 | 5.0E-301 | – | |
| MobiDBLite | 21 | 46 | 26 | - | – | |
| MobiDBLite | 47 | 61 | 15 | - | – | |
| Gene3D | 52 | 493 | 442 | 8.8E-106 | ||
| Pfam | 63 | 129 | 67 | 7.7E-18 | ||
| SMART | 151 | 190 | 40 | 370.0 | ||
| SUPERFAMILY | 152 | 479 | 328 | 3.83E-44 | ||
| SMART | 205 | 245 | 41 | 0.066 | ||
| Pfam | 210 | 245 | 36 | 0.0065 | ||
| ProSiteProfiles | 222 | 254 | 33 | 8.604 | ||
| SMART | 276 | 316 | 41 | 2.8E-5 | ||
| Pfam | 281 | 316 | 36 | 0.022 | ||
| ProSiteProfiles | 283 | 419 | 137 | 22.227 | ||
| ProSiteProfiles | 283 | 316 | 34 | 9.807 | ||
| SMART | 320 | 361 | 42 | 9.1E-6 | ||
| ProSiteProfiles | 328 | 361 | 34 | 10.275 | ||
| Pfam | 329 | 361 | 33 | 0.0015 | ||
| SMART | 370 | 410 | 41 | 1.4E-7 | ||
| Pfam | 372 | 410 | 39 | 2.9E-6 | ||
| ProSiteProfiles | 377 | 412 | 36 | 12.714 | ||
| SMART | 428 | 475 | 48 | 6.3 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0231800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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