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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0235700 |
| Transcript ID | LotjaGi6g1v0235700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ENTH/ANTH/VHS superfamily protein; TAIR: AT4G25940.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g25940; TrEMBL-Plants: tr|A0A151T5F7|A0A151T5F7_CAJCA Putative clathrin assembly protein family; Found in the gene: LotjaGi6g1v0235700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54564357..54569807) extracted from Lotus japonicus Gifu genome v1.2.
GCCTGACACAATCTGAAAGTATCAAAATGCCCCTTACATAAATAGAACAAATTAACAAGAAGAAACAAAAGCACATTATT GCATGTTTCTCCTTCTTTCTCTCTTCCCTTCATCAGAATCATAAAACAAAACAATTTTTCATGAGTAATGGGAACGTTTC AGAGCTTCAGAAAGGCCTATGGAGCTCTTAAGGACTCTACCAAGGTTGGCCTTGCCAAAGTCAATAGCGAATACAAGGTG ATTTTGATCCCCATTTTCGCATATACAAACTTATACATATGCATGAACATATATCTATATATGATCAATCTCTAGCTCAT TGTTGTAATTTTTTCAATTGCTTTCTTATTCTTCCATTTTTTATGTTTTGATGATGGTGTTCCATTTTTTTTGAAGGAGT TGGATATTGCAATTGTAAAGGCTACCAATCATGTGGAATATCCTCCCAAAGAACGCCATGTTCGAAGTAAGTTGATATAC CTCATTAGTCATCTTTGATTCTCAAATTTTTAAATTTAATTTATACCTTTTATGTGTGATCATGAAATTTGTTTTGCATA AGCTCTGAATTGTTATTCATTTTTCAAAGCTTCAAATTATCAAGCTATGCTTGTTCATTTTCCTTGCTATTATTTCACTA AAAATTTGAAATGGTTACAATAATGTGAAGTTTAAGGTATTGATCTAAATTGCAATGCTTATTTTCTCCAACACTCTTTT TTATATATATAAAACTTGCCTCAAATTGTTTGCAGAAATATTCTATGCGACATCAGCACACCAACCACGAGCAGATGTGG CATATTGCATTCATAAACTTTCCAAGAGGCTTGGCAAGACACGAAGTTGGATAGTAAATCCTTTTCACACTTAGCAGTTT GACATGTTTTCTTTTGAAAATACTAAGAGCTAAATGATAATCCAAAATTCAAAACAAATTAATAGGAACATGGTAGCACA TTAGAAGTCTTTGAACAGTGGTGTTGGAGGTTTTGCTTTATTTGCTTTCCTCTTTATGCATGCTTATTTGGTATCATGCA GTGCATGTCATGAAATCCTTCTACAATCGATTCTAAAGCGTAATCAATTTTGAGGAGAATCTTTTGTTCTAGAATTCCTA ATTAATTACGAGGAAAGAGGAGTTAATCCAAACATGCTAGTAGGGTGAATCGTCGTCTTATGGTTCTGATTCTATTTCAA AACTATTAAGATATGACATGTTCATCAATTAGCATCCACCTTGTATGATTTAGATAGAACCTGGACACAATTTTACTATG ATAAAGTGTTTTCTTCACCATGTAACTGAGTAATAAAATGACAGGTTGCTATAAAGACATTGATAGTAATTCACAGGACT TTGAGAGAAGGTGATCCTACCTTCAGAGAAGAGATTCTAAACTACACACGTAGGGGACATATTTTCCAAATATCCAATTT CAAAGATGACTCAAGCCCTCAAGGTAATTTAGTCAGTGGATTATTTATAAACTCTTTTGTTATTCAGCATCATTTCATTT CATGACTAATTGAGTTTCTCTGTGCAGCTTGGGATTGTTCAGCTTGGGTTCGAACCTACGCACTATTCTTAGAAGAAAGA CTTGAATGTTTTAGAATACTTAAATATGACATCGAATCTGAGCGTATAATCAAATCATCACCAGCTGCAACTAAAGTATA TGACATTCCATGATCACAAAATTTTCTAAGCTTCTTGTTTCTATGTTTAGAATGTTACTAACTTCATGCCGTAACAGGGA CATAGTAGAACTCGGTCAGCGGGTGCTGAAGATCTTTTGGAGCAGCTACCGGCATTGCAGCAACTTCTATATCGTCTAAT CGGTTGTCAGGTATGAAAGATTCGGTACATGTGTTTCGTTGTGTCCTATGCAGTGTCATAGCCGGTCCTAAGCTTGGATC ATGTGATCACTTAGTGGGATAACACTTTTGTTTATGTTTGTTTATTCTTGACTTAAAGATGACATTTAATTTGTTTTAAT ATCTTGTAGCCTGAAGGATGTGCTTACAGCAATTATCTAGTGCAGTATGCATTGGCCCTGGTATGTATGTTTATTATTTG TTCTTAGCACATAATAGCAGCTTAAGACTTATATTAAGTGGAAATTGTATGACTAGATAATTACGGATACATGTAGTCAT GTGGTCATATATGCAATTAAACTAGTATCTTCCAATAAAGAGCTTTTAGAATCCTGTCATATGATTATTGCTACTAGATC ATATCACTCCATTGAAGAAATGGATTCTGATAAGAGATAAAGAATTAAAGATTACAATGGCTTAATGAATCACATTATGT AATTTCTACCCTTTTGGAATTGTATATCTTGAAATTCAAAATGATTGCAGCCTAATTCATCCCCAACACCAGTTCTAATT CCCTGAAAAGAAATAGATTTTGATGATTTTTCTGGGATCTCTGTAGTTAGGCTTGTGTCTCTTTTTGTCACTTCTTTTTG TCTTTTGGTGATGTCATGTAGGTATTGAAGGAGAGCTTCAAGATATATTGTGCACTCAATGATGGAATCATCAATCTTGT GGACTTGGTAGTGTCATGTCAGTTTATTTTTCTATTTGATCATTTCACATGAATTTTAAATTGTACTAACTGATTCGAGT TGCAGTTCTTCGATATGTCAAGACATGACGCGGTGAAAGCTCTAAATATTTATAAAAGAGCTGGCCAACAGGTTTACACT GATTATTTTCTTTAGAGACATTCTTGTTGCAATTGAATGTGGGTTGAATCTTTTTTGAACTGATGGTTTTTCTTATTAAT ACTATGCAGGCTGAAAATCTAGCTGAATTTTATGAGTACTGCAAAGGCTTGGATCTTGCTAGAAATTTCCAATTTCCAAT GCTGAGACAGGTTCTTTTTGTTTCTTAGTGTATACTTCATGTGATACAATGGGCAGAAGAATCTCATAGAGCTCTTTTAC TTCAATAAACAGCCACCTCCCTCTTTCCTTGCCACAATGGAGGAATACATTAGAGAAGCACCCCAAACAGGCTCTGTAAA TAAGAGACTGGTAAGAAAAAGTAATGTTCAAGTTTCTTTAAGAAAACGTTTGTATTACATGTATTCTTAGATTTGTATAA AATCTTCAATGAACTAGTATGGAAGTGGATTCCCTACATTCAGTCATCCAATCTTAGTCGCTCGATCAAGATAGGCCAGT TCGGATTTTAAATTTTTATCTACCGTTAGATCTTGATGAAATATATGAAACGACTGTTCTTAATCTGGCGGCTCAGATTG CGTGACTGTGTGAATACAGATATAGTTATCCCTGACTACAGGAATCTGAATCCATGAGAGAACTTGTTCTCATCAATTTA AATAGGTATTCTTTCAGACAAGCCACAATACATTTGTATAATTTAGTTCATTAATGAATTCCACTCAACACCAGGAGTAT CAAGAAAATGATCAATCACCGAAAGAAGAATCAGAATCCAATGAACCCGAAGAGCCTCAAGAAAGTGAGAAAGAAGAAGA GGAGGTTAAGGAGGAAGAACCAATAGCAGAGGAAGAACAACAACCAAAGGAAGAGGAGGAGGTTGAGCCTCCTCCTTTGA TATCAACTGATGATACAGATTTGCTGGTATGTTTTGGTTATCTGGTAATAATAATGTTCATGTGTTTATGATGTTGACTT TGATAGAGTATATTTGTTCACCTTTCTGTAGGGTCTAAATGAAATAAATCCAAAAGCTGCAGAACTGGAGCAAAACAATG CTATGGCCCTTGCAATCTTACCACCTGATGGTAAGGCCTAAAGTAATTGATAAATGATGATTGATTAACCTGTCTGGATA CGTTCCAAAGAGCACTTATTGGAGCTTATATACTAAAAAACCGCTGAATAAGATCCAATAAGTGCTCTTTGTTCTACAGC CAAACACGCTCTAATAAATATTAATTGTTTTAGTACATGTCTTCCCAAAGTTCAAATACACCGACCTATGTATCAATCAG GCCTGAATTCATGGACTAAAGTTTACTTGTTTGATTCCTCATCCAATTCTAAGATTTTGAAAGTTTTATGCAGGCCATAA TCCAAACAATCTTGCTTTAAGTAGCATTGGTGGGACAACTGGTTGGGAGCTTGCACTCGTCACAGCACCAAGTAACCACA CCAATCAAGCACCAGATCGCAAAATGGTTTGTTTCTCTGCCTTACTAATTCGAATTGCTTATCTTCGTTGAGTTTGCAGA TCCTATCTTTATTTATTTGTATAAATATAACATAACCAGTCAGATCTGTGATGAGTTGGCATGATTTCCATTCAACATAA ATAAGTTACAAATACACTTTCAAGTAAGTTATCTATGTTATGTAAGTTTGTTTGAAAATAGTTGTACTACCAAATTTCCA TATAGATCAATGATTCATGGATATTAAGGACAACATAGGCTATAATTTTGCATTCAGGTAAGAGTAAAAAAATAGACCAT TCATAGAGAGAGTGTTGAACCTGCTCTCAAGATATCTTGCGTTCGGGGCAGTCAAGAGTCCACAGCCATCCGATCTTATT CACAGATGACTCAGACTTAAAGAGGTCATTATACCTTATAATAGTCTCTTTATATCTAAATGGTAGGATCTTGATCGGAC GGTTGTAGTTCCCTGACTTCACCGAGTTCATGATTCTCAGACTGTAAGGAATATGAATTCCAAGTTACATGTCTCATTGC AAGAAAATGACATTTTCTTTTTTCGGTGAGTCAGGCTGGTGGTTTTGACAAGCTATTACTAGACAGTTTGTATGAAGATG ATAATGCAAGGAGACAACATCAACTCCAAATGGCTGGTTATGGACATGGGGGAGTGCCTGTGGAAAATCCATTTGATCAT TATAATCAGCAGCATGATCCATTTGCAATGTCCTCCAACATAGCACCTCCAACCAATGTGCAATTAGCATTACTGGCACA ACAACAGCAACAACACCAAATGATGTACCAGCAGCCTCAACAACAACAACAACACATGATGTTCCAACCACAACATCACA ACATGATGATGGTCCCTCACCCACAACATACCCAATACCCTCACCAGATGCAGAGTGGGGATCCTAACAATCCTTTTGGA GATCCCTTACCTGTGCCTAGCTATCCTCACAGTTCCTTGCCTCAACAAGGAAATTACAATTTAATGTAGAGTTCATTTTT TCTACTTAAACCTACCTACCCTCTCATCTTCAAAGCTTCCCACACCAAACAGAAAGTTTTCTTTTGTTTTCCTGTGTAGC ATCACCTTCTGTTGATGAAATTCTTTAATTGTTGAACAGTGAACAAGATATGTAATTTTTTTATTCTTATTATCTAGACA AATAAATGAAAAAAGGTCACTTATATAAACTATGAACGTGGAAATATAGTCAAAGTTGTTTCATATATTACTACATAAAG ATCATTTATTC
CDS sequence (LotjaGi6g1v0235700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAACGTTTCAGAGCTTCAGAAAGGCCTATGGAGCTCTTAAGGACTCTACCAAGGTTGGCCTTGCCAAAGTCAATAG CGAATACAAGGAGTTGGATATTGCAATTGTAAAGGCTACCAATCATGTGGAATATCCTCCCAAAGAACGCCATGTTCGAA AAATATTCTATGCGACATCAGCACACCAACCACGAGCAGATGTGGCATATTGCATTCATAAACTTTCCAAGAGGCTTGGC AAGACACGAAGTTGGATAGTTGCTATAAAGACATTGATAGTAATTCACAGGACTTTGAGAGAAGGTGATCCTACCTTCAG AGAAGAGATTCTAAACTACACACGTAGGGGACATATTTTCCAAATATCCAATTTCAAAGATGACTCAAGCCCTCAAGCTT GGGATTGTTCAGCTTGGGTTCGAACCTACGCACTATTCTTAGAAGAAAGACTTGAATGTTTTAGAATACTTAAATATGAC ATCGAATCTGAGCGTATAATCAAATCATCACCAGCTGCAACTAAAGGACATAGTAGAACTCGGTCAGCGGGTGCTGAAGA TCTTTTGGAGCAGCTACCGGCATTGCAGCAACTTCTATATCGTCTAATCGGTTGTCAGCCTGAAGGATGTGCTTACAGCA ATTATCTAGTGCAGTATGCATTGGCCCTGGTATTGAAGGAGAGCTTCAAGATATATTGTGCACTCAATGATGGAATCATC AATCTTGTGGACTTGTTCTTCGATATGTCAAGACATGACGCGGTGAAAGCTCTAAATATTTATAAAAGAGCTGGCCAACA GGCTGAAAATCTAGCTGAATTTTATGAGTACTGCAAAGGCTTGGATCTTGCTAGAAATTTCCAATTTCCAATGCTGAGAC AGCCACCTCCCTCTTTCCTTGCCACAATGGAGGAATACATTAGAGAAGCACCCCAAACAGGCTCTGTAAATAAGAGACTG GAGTATCAAGAAAATGATCAATCACCGAAAGAAGAATCAGAATCCAATGAACCCGAAGAGCCTCAAGAAAGTGAGAAAGA AGAAGAGGAGGTTAAGGAGGAAGAACCAATAGCAGAGGAAGAACAACAACCAAAGGAAGAGGAGGAGGTTGAGCCTCCTC CTTTGATATCAACTGATGATACAGATTTGCTGGGTCTAAATGAAATAAATCCAAAAGCTGCAGAACTGGAGCAAAACAAT GCTATGGCCCTTGCAATCTTACCACCTGATGGCCATAATCCAAACAATCTTGCTTTAAGTAGCATTGGTGGGACAACTGG TTGGGAGCTTGCACTCGTCACAGCACCAAGTAACCACACCAATCAAGCACCAGATCGCAAAATGGCTGGTGGTTTTGACA AGCTATTACTAGACAGTTTGTATGAAGATGATAATGCAAGGAGACAACATCAACTCCAAATGGCTGGTTATGGACATGGG GGAGTGCCTGTGGAAAATCCATTTGATCATTATAATCAGCAGCATGATCCATTTGCAATGTCCTCCAACATAGCACCTCC AACCAATGTGCAATTAGCATTACTGGCACAACAACAGCAACAACACCAAATGATGTACCAGCAGCCTCAACAACAACAAC AACACATGATGTTCCAACCACAACATCACAACATGATGATGGTCCCTCACCCACAACATACCCAATACCCTCACCAGATG CAGAGTGGGGATCCTAACAATCCTTTTGGAGATCCCTTACCTGTGCCTAGCTATCCTCACAGTTCCTTGCCTCAACAAGG AAATTACAATTTAATGTAG
Protein sequence (LotjaGi6g1v0235700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTFQSFRKAYGALKDSTKVGLAKVNSEYKELDIAIVKATNHVEYPPKERHVRKIFYATSAHQPRADVAYCIHKLSKRLG KTRSWIVAIKTLIVIHRTLREGDPTFREEILNYTRRGHIFQISNFKDDSSPQAWDCSAWVRTYALFLEERLECFRILKYD IESERIIKSSPAATKGHSRTRSAGAEDLLEQLPALQQLLYRLIGCQPEGCAYSNYLVQYALALVLKESFKIYCALNDGII NLVDLFFDMSRHDAVKALNIYKRAGQQAENLAEFYEYCKGLDLARNFQFPMLRQPPPSFLATMEEYIREAPQTGSVNKRL EYQENDQSPKEESESNEPEEPQESEKEEEEVKEEEPIAEEEQQPKEEEEVEPPPLISTDDTDLLGLNEINPKAAELEQNN AMALAILPPDGHNPNNLALSSIGGTTGWELALVTAPSNHTNQAPDRKMAGGFDKLLLDSLYEDDNARRQHQLQMAGYGHG GVPVENPFDHYNQQHDPFAMSSNIAPPTNVQLALLAQQQQQHQMMYQQPQQQQQHMMFQPQHHNMMMVPHPQHTQYPHQM QSGDPNNPFGDPLPVPSYPHSSLPQQGNYNLM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 589 | 589 | 0.0 | – | |
| PANTHER | 1 | 589 | 589 | 0.0 | – | |
| Gene3D | 5 | 161 | 157 | 1.6E-52 | ||
| ProSiteProfiles | 24 | 161 | 138 | 34.46 | ||
| SMART | 30 | 161 | 132 | 1.5E-44 | ||
| Pfam | 31 | 309 | 279 | 7.7E-95 | ||
| SUPERFAMILY | 31 | 162 | 132 | 3.18E-35 | ||
| CDD | 32 | 154 | 123 | 9.43941E-65 | – | |
| Gene3D | 173 | 326 | 154 | 1.5E-45 | ||
| SUPERFAMILY | 178 | 309 | 132 | 4.32E-46 | – | |
| MobiDBLite | 311 | 382 | 72 | - | – | |
| MobiDBLite | 336 | 367 | 32 | - | – | |
| MobiDBLite | 551 | 592 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phospholipid binding | Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester. | ||
| Molecular function | 1-phosphatidylinositol binding | Interacting selectively and non-covalently with phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. | ||
| Cellular component | Clathrin-coated vesicle | A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes. | ||
| Molecular function | Clathrin binding | Interacting selectively and non-covalently with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles. | ||
| Biological process | Clathrin coat assembly | The process that results in the assembly of clathrin triskelia into the ordered structure known as a clathrin cage. |
Expression pattern of LotjaGi6g1v0235700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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