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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0237300 |
| Transcript ID | LotjaGi6g1v0237300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Defensin fusion; TAIR: AT5G38330.1 low-molecular-weight cysteine-rich 80; Swiss-Prot: sp|P82789|DF181_ARATH Defensin-like protein 181; TrEMBL-Plants: tr|I3SJZ1|I3SJZ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0237300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54718872..54719505) extracted from Lotus japonicus Gifu genome v1.2.
TGGCCAAGGATTTTCTAGCTATCTAATGGCTATGAATCTCTCAAGCTTTTTTCATTTTCTTGTCCTCCTAATAACCATAG TGCATTTCATGGTGGTAGGAGATGCATGTTCTCATTTACTTCCAGGTTCATGCTCTGTGAGTGAAGAATGCAATCAGCGC TGTAAATCCCTGCACCATAGGGATGCATTAATAGGGGTTTGTTCTAACAAATTATGCACCTGTTATTATAAATGTCAACC TTCACCAGTAAAAAGGACATGCAGTGCTGCGGACATTGGAGGACTTTGCGAGTCGACAGATGCTTGCAATGAAAAGTGTC GTGTTTTCCCTCAGGGTGTAGGGCTTTGTATATGGATTATTGATTTGAATCTGTGCACTTGTACGTATCCGTGCTGATGT ATTAATGTTTCAGATGTTTTTAAATGAATTGTACTGTTAGAAGTGATCTTTAATTTGCTACACCAAGAGATGCATGCCTT GCTGGGCGCTTTGGATTGTGCAATGTAAAGTGTTCTAGATATATTAAATCAGGGAAAGGGGTATTGACGTATTGTTCTCA ATGGCAAGATAAGAACTTGTGCATTTGCGAGTATACTTGCTGATGTACTGTTTCTGATAAATTTATATAATTAC
CDS sequence (LotjaGi6g1v0237300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTATGAATCTCTCAAGCTTTTTTCATTTTCTTGTCCTCCTAATAACCATAGTGCATTTCATGGTGGTAGGAGATGC ATGTTCTCATTTACTTCCAGGTTCATGCTCTGTGAGTGAAGAATGCAATCAGCGCTGTAAATCCCTGCACCATAGGGATG CATTAATAGGGGTTTGTTCTAACAAATTATGCACCTGTTATTATAAATGTCAACCTTCACCAGTAAAAAGGACATGCAGT GCTGCGGACATTGGAGGACTTTGCGAGTCGACAGATGCTTGCAATGAAAAGTGTCGTGTTTTCCCTCAGGGTGTAGGGCT TTGTATATGGATTATTGATTTGAATCTGTGCACTTGTACGTATCCGTGCTGA
Protein sequence (LotjaGi6g1v0237300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMNLSSFFHFLVLLITIVHFMVVGDACSHLLPGSCSVSEECNQRCKSLHHRDALIGVCSNKLCTCYYKCQPSPVKRTCS AADIGGLCESTDACNEKCRVFPQGVGLCIWIIDLNLCTCTYPC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| PANTHER | 4 | 123 | 120 | 1.6E-16 | ||
| Phobius | 5 | 16 | 12 | - | – | |
| TMHMM | 7 | 24 | 18 | - | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 123 | 102 | - | – | |
| SMART | 27 | 70 | 44 | 0.28 | ||
| SMART | 78 | 123 | 46 | 1.8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Defense response | Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. |
Expression pattern of LotjaGi6g1v0237300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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