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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0239500 |
| Transcript ID | LotjaGi6g1v0239500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT2G34400.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400; TrEMBL-Plants: tr|Q2HS18|Q2HS18_MEDTR Tetratricopeptide-like helical; Found in the gene: LotjaGi6g1v0239500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55060843..55063871) extracted from Lotus japonicus Gifu genome v1.2.
CAATTTTTTTCCAATTAATCTCACCCAAAATTGAGATTCAAACCATTAATTAATTTTTGCATATAAGAGTGTTTGAAAAA GCCCTTGCATGTTTGTATCAAACACTAGTTCACATGCAGTTTTCCCGGCACCTAACCGCCACATTTGAAAACGCAGCTTG CAACGCAAACCACCACTCACCGGAAGCTGCTGCGGCGGTGCTATCCCTACTCCGGCAATGTCCCTCCACGAAGACCCTCC AACAGGTTCACACCCAAATGGTGGTGAACTCCATTCACAAACCCAACCACCTTCTCTCCAGAGCCATACACCTCAAAGAC TTCACCTACTCCTCCCTCATCTTCTCCCATATCTCCCCTCACCCCAACGACTACGCCTTCAACATCATGCTCCGCGCCGT CACCACCACTTGGCACCGCTACCCTCTTGCCCTCACCCTCTACCACCAAATGAAATCACTCTCTATACCCCCTAACAACT TCACCTTCCCTTTCGTGTTTCTCGCCTGCGCCAACCTCCCGGATGAACTTAACGGCCGCGCTGCACACTCCTCGGTTTTT AAACTTGGGCTGGACACGGACCACCACACCGCGCACTCCATGATCACGATGTATGCTCGATGTGGCCGGATGGGGTGTGC GCGCAAGGTGTTTGATGAAATTCCGTCCAAGGACTTGGTGTCGTGGAACTCGATGATTTCGGGGTATGCGAAGATGGGTC ACGCGAGGGAGGCCGTGGAGGTGTTTTCGCGGTTGAGGAGGGAAGGCGGATTTGAGCCTGATGAGATGAGCTTGGTGAGC GTTCTTGGAGCGTGTGGTGAGATGGGGGATTTGGAGCTGGGGAGGTGGGTGGAATGGTTCGTTGTGGAACGTGATATGGC GATGAACTCGTATATAGGTTCTTCTTTGATTAGTATGTATGCTAAATGCGGTGACTTGGTTTCGGCTAGAAGGATCTTTG ACAGTATGCCTAAAAGAGATCTTATCACGTGGAATGCTATTATATCAGGGTCAGTATATTTTAAAAATTTAGTAGTCTAT GGCACCTGAGGGTATATTTATTTCAAATCAGTTCCAATGTCTTGAACTTCATGGAGTAGTTTGTCAGATGAACATTCAAA GACTAATATCACTACTTGATGACTGTTCAAGGATCATAGACACAATTTCCATCATCTAAGTCCAGGGCCTAATATGATCC ACAATGTAATTTCAGGACTTCAACTCTTTCTAGATAGTAACTTACTTAATTGGTTATATCTTGTGACTTACATGGCATGG ACATCATCGTATATGGCATTTTTATACATATGGATATGCATGTTGAGTTAGATAGTAGATTTGAAAATGCTTTCTTCATG CCCCAATCACTTTTTCTAATAGTCAGTTTATTCTAAATTAATTTCCAATGATCTCACTTTTTGTGATTTATACATACATG ACAGATATGCTCAAAACGGAAAGGCGGATGAAGCAATTTCTTTATTTCATGGCATGAAGGAGGATCATGTTAATCCGAAT AAAATTACGCTAACTGCGGTGCTGTCTGCGTGTGCCTCCATTGGGGCACTGGATTTGGGGAAGCAGATTGATGAGCATGC ATCACAAGGAGGATGTCGACATGATATTTTTGTGGCTACTGCATTGGTTGATATGTATGCTAAGTGTGGGAGTTTGGAGA CTGCAGAGAGAGTTTTCAATGAGATGCCCCGAAAAAATGAAGCTTCTTGGAATGCAATGATCTCTGCTCTTGCTTCTCAT GGCAAAGCCAAGGAAGCTCTATCACTCTTTCAGCGAATGTCAGACGAGGGTGGCGGTGCCCGCCCCAATGATATAACATT TGTAGGGCTGCTTTCTGCTTGTGTGCATGCAGGCCTGGTTGCTGAGGGGTATAGGTTGTTTGATATGATGAGCACATTGT TTGGATTGGTGCCAAAAATTGAGCACTACTCTTGTATGGTTGATCTTTTAGCTCGTGCTGGTCAGTTATATGAAGCTTGG GATCTGATTGAGAAAATGCCTGAAAAACCAGATAAGGTTACATTAGGAGCTTTACTCGGTGCCTGTCGAAGGAAGAAAAA TGTAGATATTGGTGAACGGGTTATGCAGCTGCTTCTGGAGTTGGATCCTTCAAATTCTGGAAACTATATTATCTCATCAA AAATATATGCAAATTTAAACATGTGGGATGATTCGGCAAGGATGAGAGCGTTGATGAAAGAGAAGGGTGTCACTAAAACT CCTGGTTGTAGCTGGATTGAAATTGAAAGTCACTTGCATGAATTTCACGCCGGTGATGGCTTATCCCTTGACTCTACAGA TATATGTAACTTGATTGATTTGCTCTACATGGAGCTCAAAAGGGAAGGGTATGTCCCTAATATTGTTGAATAGCTGCGTG AGGAGCCAAAAGATGTGTTTTATTGGAAGTTACTAAGGTTGGGAAACTCACACTAAGTGGAATTCAGCTGTCTCTCTCAG CTTAACCATTCATATCTGTTGGGTTGATTTCATCAGGTTAGTGTCTTCTGATGGCACATCTTAATATATGGTGGGAACCT CCTTTATTGTTCTGCTGATGTTTGTATTGTTTTTACATGAAGCTTGGAATTAGATCATTTAAGGAGGAGGATGAGCCTCT GACATTTACATCAGCCAACTGCTGATCTTGTTGATTTGGGTCGAATGTAGCAACAGAATTTGCTTCTTAAAGAGAACAAG ATTTTGTGTTGATGAGGCAAACAGTTGTAGGCCATTGATGATAAAAAGTTGATGACATGAGTGTAGGGAAAAAAAAGCTG TACCTTCCATTTTCAGTTTTTATCCTTGGTTATTTTCTATTTCAGTTCCATTCTTCTATAATGTGACAAAATAATTCAAA ATGATTAGACTTTATGAGTTCATGATTATATGCACTTTCATTCTTCTCTTAATGAGATTACCGTTCAGTCAAGTTTTACT CAACACCATAACTTAACAAGAAATGACATGTAGTAATGGAAATCTATAACAATTATTTTGAAGTAAATG
CDS sequence (LotjaGi6g1v0239500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGTTTTCCCGGCACCTAACCGCCACATTTGAAAACGCAGCTTGCAACGCAAACCACCACTCACCGGAAGCTGCTGC GGCGGTGCTATCCCTACTCCGGCAATGTCCCTCCACGAAGACCCTCCAACAGGTTCACACCCAAATGGTGGTGAACTCCA TTCACAAACCCAACCACCTTCTCTCCAGAGCCATACACCTCAAAGACTTCACCTACTCCTCCCTCATCTTCTCCCATATC TCCCCTCACCCCAACGACTACGCCTTCAACATCATGCTCCGCGCCGTCACCACCACTTGGCACCGCTACCCTCTTGCCCT CACCCTCTACCACCAAATGAAATCACTCTCTATACCCCCTAACAACTTCACCTTCCCTTTCGTGTTTCTCGCCTGCGCCA ACCTCCCGGATGAACTTAACGGCCGCGCTGCACACTCCTCGGTTTTTAAACTTGGGCTGGACACGGACCACCACACCGCG CACTCCATGATCACGATGTATGCTCGATGTGGCCGGATGGGGTGTGCGCGCAAGGTGTTTGATGAAATTCCGTCCAAGGA CTTGGTGTCGTGGAACTCGATGATTTCGGGGTATGCGAAGATGGGTCACGCGAGGGAGGCCGTGGAGGTGTTTTCGCGGT TGAGGAGGGAAGGCGGATTTGAGCCTGATGAGATGAGCTTGGTGAGCGTTCTTGGAGCGTGTGGTGAGATGGGGGATTTG GAGCTGGGGAGGTGGGTGGAATGGTTCGTTGTGGAACGTGATATGGCGATGAACTCGTATATAGGTTCTTCTTTGATTAG TATGTATGCTAAATGCGGTGACTTGGTTTCGGCTAGAAGGATCTTTGACAGTATGCCTAAAAGAGATCTTATCACGTGGA ATGCTATTATATCAGGATATGCTCAAAACGGAAAGGCGGATGAAGCAATTTCTTTATTTCATGGCATGAAGGAGGATCAT GTTAATCCGAATAAAATTACGCTAACTGCGGTGCTGTCTGCGTGTGCCTCCATTGGGGCACTGGATTTGGGGAAGCAGAT TGATGAGCATGCATCACAAGGAGGATGTCGACATGATATTTTTGTGGCTACTGCATTGGTTGATATGTATGCTAAGTGTG GGAGTTTGGAGACTGCAGAGAGAGTTTTCAATGAGATGCCCCGAAAAAATGAAGCTTCTTGGAATGCAATGATCTCTGCT CTTGCTTCTCATGGCAAAGCCAAGGAAGCTCTATCACTCTTTCAGCGAATGTCAGACGAGGGTGGCGGTGCCCGCCCCAA TGATATAACATTTGTAGGGCTGCTTTCTGCTTGTGTGCATGCAGGCCTGGTTGCTGAGGGGTATAGGTTGTTTGATATGA TGAGCACATTGTTTGGATTGGTGCCAAAAATTGAGCACTACTCTTGTATGGTTGATCTTTTAGCTCGTGCTGGTCAGTTA TATGAAGCTTGGGATCTGATTGAGAAAATGCCTGAAAAACCAGATAAGGTTACATTAGGAGCTTTACTCGGTGCCTGTCG AAGGAAGAAAAATGTAGATATTGGTGAACGGGTTATGCAGCTGCTTCTGGAGTTGGATCCTTCAAATTCTGGAAACTATA TTATCTCATCAAAAATATATGCAAATTTAAACATGTGGGATGATTCGGCAAGGATGAGAGCGTTGATGAAAGAGAAGGGT GTCACTAAAACTCCTGGTTGTAGCTGGATTGAAATTGAAAGTCACTTGCATGAATTTCACGCCGGTGATGGCTTATCCCT TGACTCTACAGATATATGTAACTTGATTGATTTGCTCTACATGGAGCTCAAAAGGGAAGGGTATGTCCCTAATATTGTTG AATAG
Protein sequence (LotjaGi6g1v0239500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQFSRHLTATFENAACNANHHSPEAAAAVLSLLRQCPSTKTLQQVHTQMVVNSIHKPNHLLSRAIHLKDFTYSSLIFSHI SPHPNDYAFNIMLRAVTTTWHRYPLALTLYHQMKSLSIPPNNFTFPFVFLACANLPDELNGRAAHSSVFKLGLDTDHHTA HSMITMYARCGRMGCARKVFDEIPSKDLVSWNSMISGYAKMGHAREAVEVFSRLRREGGFEPDEMSLVSVLGACGEMGDL ELGRWVEWFVVERDMAMNSYIGSSLISMYAKCGDLVSARRIFDSMPKRDLITWNAIISGYAQNGKADEAISLFHGMKEDH VNPNKITLTAVLSACASIGALDLGKQIDEHASQGGCRHDIFVATALVDMYAKCGSLETAERVFNEMPRKNEASWNAMISA LASHGKAKEALSLFQRMSDEGGGARPNDITFVGLLSACVHAGLVAEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGQL YEAWDLIEKMPEKPDKVTLGALLGACRRKKNVDIGERVMQLLLELDPSNSGNYIISSKIYANLNMWDDSARMRALMKEKG VTKTPGCSWIEIESHLHEFHAGDGLSLDSTDICNLIDLLYMELKREGYVPNIVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 72 | 244 | 173 | 1.6E-117 | – | |
| ProSiteProfiles | 85 | 120 | 36 | 8.177 | ||
| Gene3D | 100 | 249 | 150 | 2.1E-30 | ||
| ProSiteProfiles | 156 | 186 | 31 | 8.046 | ||
| Pfam | 161 | 187 | 27 | 0.013 | ||
| ProSiteProfiles | 187 | 222 | 36 | 11.959 | ||
| SUPERFAMILY | 188 | 549 | 362 | 3.16E-5 | ||
| Pfam | 189 | 218 | 30 | 1.1E-8 | ||
| TIGRFAM | 189 | 224 | 36 | 3.1E-8 | ||
| ProSiteProfiles | 223 | 257 | 35 | 5.097 | ||
| SUPERFAMILY | 248 | 417 | 170 | 1.1E-5 | ||
| Gene3D | 250 | 353 | 104 | 1.3E-25 | ||
| ProSiteProfiles | 258 | 288 | 31 | 8.396 | ||
| PANTHER | 258 | 347 | 90 | 1.6E-117 | – | |
| TIGRFAM | 264 | 289 | 26 | 0.0023 | ||
| ProSiteProfiles | 289 | 323 | 35 | 13.055 | ||
| Pfam | 289 | 336 | 48 | 3.8E-13 | ||
| TIGRFAM | 291 | 324 | 34 | 4.3E-9 | ||
| ProSiteProfiles | 324 | 358 | 35 | 6.281 | ||
| PANTHER | 343 | 557 | 215 | 1.6E-117 | – | |
| ProSiteProfiles | 359 | 389 | 31 | 9.372 | ||
| TIGRFAM | 364 | 389 | 26 | 4.0E-4 | ||
| Pfam | 389 | 439 | 51 | 3.4E-9 | ||
| ProSiteProfiles | 390 | 424 | 35 | 11.159 | ||
| Gene3D | 392 | 595 | 204 | 7.2E-35 | ||
| TIGRFAM | 393 | 421 | 29 | 1.5E-6 | ||
| ProSiteProfiles | 427 | 457 | 31 | 7.344 | ||
| ProSiteProfiles | 463 | 493 | 31 | 8.517 | ||
| Pfam | 466 | 493 | 28 | 0.0011 | ||
| TIGRFAM | 467 | 492 | 26 | 0.0026 | ||
| ProSiteProfiles | 495 | 525 | 31 | 5.963 | ||
| ProSiteProfiles | 529 | 563 | 35 | 6.292 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0239500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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