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LotjaGi6g1v0239800.2

Overview

Field Value
Gene ID LotjaGi6g1v0239800
Transcript ID LotjaGi6g1v0239800.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Pumilio, putative; TAIR: AT3G20250.2 pumilio 5; Swiss-Prot: sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5; TrEMBL-Plants: tr|A0A0B2RRT4|A0A0B2RRT4_GLYSO Pumilio like 5; Found in the gene: LotjaGi6g1v0239800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:55086687..55092472) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCAACTGAAAGTCCAATTAGAATCTCAGAAGCTGGGGGTAAGTGGCCGTCTCATAAGGAAGCTGCAACTTTTGGTCA ACCATCTCATAACATGGTGACTGAGGATTTGGGTATACTTTTGAAGGGCCATAGGTTCCATGGCAGGGGACACGATGTTG CACCCAATCGCAGTGGCAGTGCACCTCCCAGCATGGAAGGTTCATTTCTGGCCATAGAAAACCTATTACACCAGCAAAAC ACCACCGAGAATACAAGTTTGACAACGCTAAGCAGAGCTGTGCAAAATTGTGAGTCTGAAGAACAATTACGAGCCAGTCC AGCTTATTTGGCATATTACAGTTCCAATGTCAACCTAAACCCTAGACTTCCTCCCCCGCTTACATCCTGGGAAAATCGCC ATCTAGGGCATCATATTGGTAGTTTTAGAGATAATGGGAGGTTTTCTTCTGATCATGGCAGTAAAAGTTCTCTTTCAACA CACAAGGAAGAACCCGAGGATGATTCACCCAAACGGCCATATGAAAGTGAATTAGTTAAAACAACTGGAGTATGGCATAG ACCAGGTGCAGCTTCATTGACATCACAGCACAAAAATGCAGTTGATCTAATTCAGGTGACTATTTTTATATCAACATCTC AGTTTTGTGATATCCATTCAATTTTTCTGCATATAAATTGCATAGCTAATTACCTAATAATTTCTTATGTTTTAATAGCA TATTTAATTATCTATCAAAAAAATTCTCCATTTATTTTCTCTAGTTTATATTTGTTTTTTGCTTTCTTAGTGGATAGTAA TCCCATGATTGTGTTGTACTGTACGTTGTTAAGTGCTTGCCATTTGTTACCTGCAGTAAAAATTTGTAATGTTTGAATGC ATAAATTTTTTTTTTGTTTAAAATTCAAACTTTCAGGAAGATTTTCCTCGCACCATGTCACCTGTATATAACAAGTCTCC TTCTGCAAGTCATGGACTGGTGGATAAATCAGTTGACTCAGAAGCCGGTTCTAGCTCTTCTCATGAGGCCTCTAATAGTG CTGTAGATTCTGCCCAACCTACAGCAGATGAAGGTGATATAAGGTTGTCATCAAGTTTTGATACCCATGCCCCAGTCGCA AGCTCATCATCACTTGAATCTACAGCCAGCATGGGTTTTAGTGACTTGAATGTTGCTACTATTGAGTCTCAACTAAAGGC TCTTAGTGTATCTAATCTACCAAATCCAGAAAGCCTGAGTTATGAAGAAAAATGGAAGACCATCTACCAGAACAATTTGA TGCAACGCCAGGTATTCCCGCAACAAAACAATCCATATGAAGTTCCTAGTGCCAATTCTCAAAGTGTAAACTCTGCCTAC GTTGTTAGGGAACAGTTTCCTCAAAATTCAGGCAAGTTCCCAGATGTCCAACCACTACTGCAGTCATCTGGGTTTACACC TCCCCTATATGCCACAGCAGCAGCTTATATGACCTCAGCAAATCCATTTTATACTAATATGCAGGCCCCAGGCATATATA CTCCACAATATGTTGGAGGGTACACTTTAAATCCTACAGCTATTCCTCAGTATATTACTGCATACCCTCCTCATGGTGCT GTGCCACTTGTTGATGGGGCCTCTAGTTCCAGATACACCCCATTAACACCAGGGGTTTCAACTGGTGGAAGCATTTCACA TGGAGCTGAAATGGTACATGCAAACAAGTACCTTGGGCAATTTGGATATCCTATGCAGCCTTCTTTTGGTGATCCTTATT ACATGCAGTATCATCAGCAACCTTTAATGGAGGGATATGGTATTTCTGGTCATTTTGACCCACTGGCACCTAGAGCAAGT GATGCTAGCCAAACTAGTCCGTATGATTCTCAAAAAAGGCCTAGTACTGGTGCTTATTTAGATGATAAAAGAATACTTGA TCAAAGAACTGGTGCTAATATTAACTCAAGAAAAGGTGGATCATTGACTCCTAGTTATTTTGGGCATATGCCAAACATGG GTTTTGTAATGCAGTATCCAAATTCCCCACTTCCTAGTCCAGCTTTCTCGGGATATCCAGAAGGAACTCTTGGCCTTCCA GGAGGTAGAAATGAAATGAAACTTTCCCCAGCTTCTGGTAGAAATGGAGGCATATTATCTGGATGGCAAGGTCAGAGGTC CTTTGACAGTGCTCATGACCCCAAAATTGTTAATTTTCTTGAAGAGTTAAAATCTGGCAAAGGTCGTAGATTTGAGCTAT CTGATATTATTGGACATATTGTTGAATTTAGGCAAGTAGCCTTTTACAGTTCTCTTCCCACCTATCTAATTGACTGATTT TTTAGCTTTGGAAATTAATTACACTGTGGCTTTTCCCTCCAGCGCTGATCAGCATGGGAGTCGATTTATACAGCAGAAGT TGGAAACTTGTGGTGTTGAAGACAAGGCATTGGTGTTCAAAGAGGTTCTCCCACGTGCTTCTAAACTAATGACTGATGTA TTTGGTAACTACGTAATACAGAAGGTATGTTTTGGAAGTGAACTATATTGCCATTAAGAGTAACTTACAGTTTGTTTAGA CTCCATTGTGCTCTAATTTTTGCCTCTCTCATGTGCTTAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGGAGGGAACTTG CAGATCAACTGGCTGGTCAGATACTGCCTTTAAGTCTGCAGATGTATGGCTGTCGTGTGATCCAAAAGGTATGTAGGGTG CGTTTGGGAACACAACATCTTAATTAAGCGCTTATGGCAATAAGTACTAATATGCTTATCACATTAGCGCTTACTCATAA GCTTATTTGATAAGCTTATGGAAATAAGCTCAAAATAGCTTATAAGTAGGTATAACTTGTAAGTGCTTATTCATAAATTA ATATGGGAAACTTATGAAAATAAGCTCAAAAGAGCTTACAATTAAGTCATAAACTTTTTTCATAAGTTCGCCCAAACACT TCCATAAATCATAAGTGCTTATGCCATAAGATAATCTCAAATAAGGTCTTCCATAACTGCTTATATGTTTAGAGTATGCA TATTTTAGTCTATATGACTTTAATTTCTGTCGTTGAATTAGAGCATTCATAACTCAGCTTTAACAGTGTCCTGCATATCC ACACCCTAGTTAGGCTGAGGCATTGGCTAAAATCCGGTTTGCATTTAATAACTAGTTGCTTATTTTTCTTCCATGGCCAA GACGTTTCCAAGCAATAATCAAACTAGCATGTTTAGATAAACTGATAAAATCATACACACTGCAATGTGTATATAACAAT ATAAAGAAGCATTGTCGGTTTTTTAGAAGTAAAATGTGTATTTATTGGGAGCTTTGCTGTGGGAAAGAAACATTAGAGTT TAAAGAGCACATGATCAAAGAAAAGGAAATCTCCAATGAGGCTACAATTAGGATCACTAAAGCGAAAAATTGACTCTGAT AAACATGTATTTTTAATGGGTTGCTTGGGTTCACCTGCACAATCTGACCCAACACGGAGTTTGGGCCTGAATTCACCCAC CTGCACTAAATGATCTAATCAATTACCCCCCGCCCTCCTTGTCATTCCACTTAACTGTTATTATCAAATGATTTAAAATA AAAGTGGAACTGTGTTGTTCCCCTTATATCCTATCGTAATTGGAAACTTGAAATGATGTCATTCCACTTGTTAAAAGAAA AAGATATGACTGACATGAAATGATATTTTTTACTTGCAGGCACTTGAGGTTATTGATCATGATCAGAAAGCTCAGCTTGT TCGTGAGCTAGATGGAAATGTTATGAGATGTGTTCGTGACCAGAATGGGAACCATGTAATACAAAAGTGCATTGAATCTA TTCCAACAAAAAAAATTGGCTTTATTCTATCTGCATTCCATGGTCAAGTTGCTAATCTATCAATGCATCCTTATGGTTGC CGAGTCATACAGGTAAGTTTATGCATTCCCTTCCTGTAAAAGATTTTTTTTTATGTGCTCATGCATTTAATCCGGTGATA ATGCTTCTTGTAGAGAGTTCTAGAGCATTGTACAGATGAGGTTCAGTGTCAGTTTATTGTGGATGAAATCTTGGAATCAG TTTGTGCTCTTGCTCAGGACCAGTATGGTAATTATGTTACCCAGGTTAATCACTGGCTCTCTTTCTATATCATGTTTGAT TATTATCATCTGGTACATAATACCATACTGCATAACTATGGACAATAGCTGCATTGCAGAATTAGCCAGGCTTATGGTTT CACTTTCTATTCTACTTCCCGTTTCTCTTAAATTTTCTGTTTGCGAAATCACTTTTCAAGACCTCTGTTCCTAAATTAAA TCATTAGGTTTCCATATTCTTTTCTAGTTTGATTTTTTATATAAAAAAGTTAAAGTCATTGGTGGCAAAGCATTACATAG TTAGAGTTTATGTCTGAGTGTGTCTATCTTATAGATGAAGGGAAGTTAGAGGTCATCTACCCCCCCCCCCCCCTTCCTTG CATTTTCATGTGAGAATACTTTTGCTTTTTATTCTCTCTCTCTCTCTCTATACATACATACATACATATGTACATATATA CACATACGTACATACATACATATATTTACACTTGAACTGATGTTGATTAAGAACCTGTTTGGATAAACCTTTTTCATAAA AAGACCACCGTTTGTAAAAAAGTGACTCATAAAATTTAGGGTGTTACTTAAACTTAAGTTACTTTGAGTAGCTTATAAGA TAACTATTACTATAGTTACAACTATCTTTTAGACTAGAAAGTGCTTTTTGTAATTATAACATGCAAAATAGCTTCCTCCT TACGTAAAATCTCTGAAAATGATTATTTTTTTCATTAGCTTAAACAAACAGGTACATCCAGGGATCACGTGTCTAATGTT TGCACAGTGGCCATTTCATATGCTGACTTATTTTTTATAGTTTACTAAGCTATATTGCTTCCCTTGTGTCATAACAGCAT GTGTTGGAGAGAGGAAAGCCTCAAGAAAGGAGCCAAATTATTGGCAAGCTGTCAGGACATATTGTTCAATTAAGCCAGCA TAAGTTTGCTTCGAATGTTGTCGAGAAGTGCTTGGTGTATGGTGATGTCCCAGAGCGGGAATCGTTGATTGCAGAGATTA TTGGACAGGATGAGCAAAATAATAATTTATTGGTAAGTTTAAACTTAGTAAGACTAATTGTTCTTCAGAATATCATAGTT GTTCCATATAAAGAAAGAACTCTTTATTCCACTGGCTTATTTGGTGTTGATGGATCTCTGAAATATGTTCTGCTAATTAA TTTGGTATGATTGACAATTTTTTTATGACTTTGGCCTTTCTTGGAGGTGTAAAATCACATTTTCTTGTGATAAAATATAT GTGCATTGGTTTATATTGTAGATTGCATTTCTAGTATTGACTTTGAAAGTTGCCAAACACTCCTTAGGGTCTATTTTTCA GACTGATTATATGTTGATATCATTGACCCTTCCCTGTCTGATGTGAGGTCTTCTAAATCATCAGAGGTTGAAATTTTTTA GCATTAGATGTGATGGTTAAAGTTTGATGCATTCAATTTGGGTTCTTGCTTACTAGATTGTATTTTCATTATCATTGTAG ACAATGATGAAAGACCAATTTGCGAACTATGTGGTCCAGAAAGTTATTGATCTCTGTTCAGAAAATCAACGAGCAACGTT GCTTTCTCACATAAGAGTTCATGCTCAGGCTTTGAAGAAATACACTTATGGAAAACACATCGTGGCTCGGTTGGAACAGC AATTTGAAGGTGTGTACTCCTTCTAG 

CDS sequence (LotjaGi6g1v0239800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAACTGAAAGTCCAATTAGAATCTCAGAAGCTGGGGGTAAGTGGCCGTCTCATAAGGAAGCTGCAACTTTTGGTCA ACCATCTCATAACATGGTGACTGAGGATTTGGGTATACTTTTGAAGGGCCATAGGTTCCATGGCAGGGGACACGATGTTG CACCCAATCGCAGTGGCAGTGCACCTCCCAGCATGGAAGGTTCATTTCTGGCCATAGAAAACCTATTACACCAGCAAAAC ACCACCGAGAATACAAGTTTGACAACGCTAAGCAGAGCTGTGCAAAATTGTGAGTCTGAAGAACAATTACGAGCCAGTCC AGCTTATTTGGCATATTACAGTTCCAATGTCAACCTAAACCCTAGACTTCCTCCCCCGCTTACATCCTGGGAAAATCGCC ATCTAGGGCATCATATTGGTAGTTTTAGAGATAATGGGAGGTTTTCTTCTGATCATGGCAGTAAAAGTTCTCTTTCAACA CACAAGGAAGAACCCGAGGATGATTCACCCAAACGGCCATATGAAAGTGAATTAGTTAAAACAACTGGAGTATGGCATAG ACCAGGTGCAGCTTCATTGACATCACAGCACAAAAATGCAGTTGATCTAATTCAGGAAGATTTTCCTCGCACCATGTCAC CTGTATATAACAAGTCTCCTTCTGCAAGTCATGGACTGGTGGATAAATCAGTTGACTCAGAAGCCGGTTCTAGCTCTTCT CATGAGGCCTCTAATAGTGCTGTAGATTCTGCCCAACCTACAGCAGATGAAGGTGATATAAGGTTGTCATCAAGTTTTGA TACCCATGCCCCAGTCGCAAGCTCATCATCACTTGAATCTACAGCCAGCATGGGTTTTAGTGACTTGAATGTTGCTACTA TTGAGTCTCAACTAAAGGCTCTTAGTGTATCTAATCTACCAAATCCAGAAAGCCTGAGTTATGAAGAAAAATGGAAGACC ATCTACCAGAACAATTTGATGCAACGCCAGGTATTCCCGCAACAAAACAATCCATATGAAGTTCCTAGTGCCAATTCTCA AAGTGTAAACTCTGCCTACGTTGTTAGGGAACAGTTTCCTCAAAATTCAGGCAAGTTCCCAGATGTCCAACCACTACTGC AGTCATCTGGGTTTACACCTCCCCTATATGCCACAGCAGCAGCTTATATGACCTCAGCAAATCCATTTTATACTAATATG CAGGCCCCAGGCATATATACTCCACAATATGTTGGAGGGTACACTTTAAATCCTACAGCTATTCCTCAGTATATTACTGC ATACCCTCCTCATGGTGCTGTGCCACTTGTTGATGGGGCCTCTAGTTCCAGATACACCCCATTAACACCAGGGGTTTCAA CTGGTGGAAGCATTTCACATGGAGCTGAAATGGTACATGCAAACAAGTACCTTGGGCAATTTGGATATCCTATGCAGCCT TCTTTTGGTGATCCTTATTACATGCAGTATCATCAGCAACCTTTAATGGAGGGATATGGTATTTCTGGTCATTTTGACCC ACTGGCACCTAGAGCAAGTGATGCTAGCCAAACTAGTCCGTATGATTCTCAAAAAAGGCCTAGTACTGGTGCTTATTTAG ATGATAAAAGAATACTTGATCAAAGAACTGGTGCTAATATTAACTCAAGAAAAGGTGGATCATTGACTCCTAGTTATTTT GGGCATATGCCAAACATGGGTTTTGTAATGCAGTATCCAAATTCCCCACTTCCTAGTCCAGCTTTCTCGGGATATCCAGA AGGAACTCTTGGCCTTCCAGGAGGTAGAAATGAAATGAAACTTTCCCCAGCTTCTGGTAGAAATGGAGGCATATTATCTG GATGGCAAGGTCAGAGGTCCTTTGACAGTGCTCATGACCCCAAAATTGTTAATTTTCTTGAAGAGTTAAAATCTGGCAAA GGTCGTAGATTTGAGCTATCTGATATTATTGGACATATTGTTGAATTTAGCGCTGATCAGCATGGGAGTCGATTTATACA GCAGAAGTTGGAAACTTGTGGTGTTGAAGACAAGGCATTGGTGTTCAAAGAGGTTCTCCCACGTGCTTCTAAACTAATGA CTGATGTATTTGGTAACTACGTAATACAGAAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGGAGGGAACTTGCAGATCAA CTGGCTGGTCAGATACTGCCTTTAAGTCTGCAGATGTATGGCTGTCGTGTGATCCAAAAGGCACTTGAGGTTATTGATCA TGATCAGAAAGCTCAGCTTGTTCGTGAGCTAGATGGAAATGTTATGAGATGTGTTCGTGACCAGAATGGGAACCATGTAA TACAAAAGTGCATTGAATCTATTCCAACAAAAAAAATTGGCTTTATTCTATCTGCATTCCATGGTCAAGTTGCTAATCTA TCAATGCATCCTTATGGTTGCCGAGTCATACAGAGAGTTCTAGAGCATTGTACAGATGAGGTTCAGTGTCAGTTTATTGT GGATGAAATCTTGGAATCAGTTTGTGCTCTTGCTCAGGACCAGTATGGTAATTATGTTACCCAGCATGTGTTGGAGAGAG GAAAGCCTCAAGAAAGGAGCCAAATTATTGGCAAGCTGTCAGGACATATTGTTCAATTAAGCCAGCATAAGTTTGCTTCG AATGTTGTCGAGAAGTGCTTGGTGTATGGTGATGTCCCAGAGCGGGAATCGTTGATTGCAGAGATTATTGGACAGGATGA GCAAAATAATAATTTATTGACAATGATGAAAGACCAATTTGCGAACTATGTGGTCCAGAAAGTTATTGATCTCTGTTCAG AAAATCAACGAGCAACGTTGCTTTCTCACATAAGAGTTCATGCTCAGGCTTTGAAGAAATACACTTATGGAAAACACATC GTGGCTCGGTTGGAACAGCAATTTGAAGGTGTGTACTCCTTCTAG 

Protein sequence (LotjaGi6g1v0239800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATESPIRISEAGGKWPSHKEAATFGQPSHNMVTEDLGILLKGHRFHGRGHDVAPNRSGSAPPSMEGSFLAIENLLHQQN TTENTSLTTLSRAVQNCESEEQLRASPAYLAYYSSNVNLNPRLPPPLTSWENRHLGHHIGSFRDNGRFSSDHGSKSSLST HKEEPEDDSPKRPYESELVKTTGVWHRPGAASLTSQHKNAVDLIQEDFPRTMSPVYNKSPSASHGLVDKSVDSEAGSSSS HEASNSAVDSAQPTADEGDIRLSSSFDTHAPVASSSSLESTASMGFSDLNVATIESQLKALSVSNLPNPESLSYEEKWKT IYQNNLMQRQVFPQQNNPYEVPSANSQSVNSAYVVREQFPQNSGKFPDVQPLLQSSGFTPPLYATAAAYMTSANPFYTNM QAPGIYTPQYVGGYTLNPTAIPQYITAYPPHGAVPLVDGASSSRYTPLTPGVSTGGSISHGAEMVHANKYLGQFGYPMQP SFGDPYYMQYHQQPLMEGYGISGHFDPLAPRASDASQTSPYDSQKRPSTGAYLDDKRILDQRTGANINSRKGGSLTPSYF GHMPNMGFVMQYPNSPLPSPAFSGYPEGTLGLPGGRNEMKLSPASGRNGGILSGWQGQRSFDSAHDPKIVNFLEELKSGK GRRFELSDIIGHIVEFSADQHGSRFIQQKLETCGVEDKALVFKEVLPRASKLMTDVFGNYVIQKFFEYGSPEQRRELADQ LAGQILPLSLQMYGCRVIQKALEVIDHDQKAQLVRELDGNVMRCVRDQNGNHVIQKCIESIPTKKIGFILSAFHGQVANL SMHPYGCRVIQRVLEHCTDEVQCQFIVDEILESVCALAQDQYGNYVTQHVLERGKPQERSQIIGKLSGHIVQLSQHKFAS NVVEKCLVYGDVPERESLIAEIIGQDEQNNNLLTMMKDQFANYVVQKVIDLCSENQRATLLSHIRVHAQALKKYTYGKHI VARLEQQFEGVYSF 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 25 25 -
PANTHER 37 968 932 0.0
PANTHER 37 968 932 0.0
MobiDBLite 141 174 34 -
MobiDBLite 212 262 51 -
MobiDBLite 507 534 28 -
MobiDBLite 512 526 15 -
ProSiteProfiles 628 968 341 130.438
Gene3D 629 970 342 3.0E-138
SUPERFAMILY 633 965 333 1.84E-114
CDD 643 964 322 6.66151E-167
ProSiteProfiles 648 683 36 9.807
SMART 648 683 36 7.1E-5
Pfam 649 678 30 7.0E-6
ProSiteProfiles 684 719 36 10.95
SMART 684 719 36 8.2E-8
Pfam 686 716 31 6.7E-8
ProSiteProfiles 720 755 36 10.95
SMART 720 755 36 5.3E-6
Pfam 723 750 28 1.8E-4
ProSiteProfiles 756 791 36 9.504
SMART 756 791 36 9.9E-6
Pfam 764 790 27 8.4E-6
ProSiteProfiles 792 828 37 10.95
SMART 792 828 37 5.5E-8
Pfam 797 827 31 1.8E-6
SMART 829 864 36 1.2E-5
ProSiteProfiles 829 864 36 11.207
Pfam 830 863 34 1.4E-5
Pfam 865 898 34 1.4E-7
ProSiteProfiles 865 900 36 9.737
SMART 865 900 36 1.9E-7
ProSiteProfiles 901 942 42 10.74
SMART 907 942 36 1.7E-8
Pfam 910 937 28 9.7E-8

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0239800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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