Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0240800 |
| Transcript ID | LotjaGi6g1v0240800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G18940.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940, chloroplastic; TrEMBL-Plants: tr|I1L1A2|I1L1A2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0240800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55239722..55242777) extracted from Lotus japonicus Gifu genome v1.2.
TAACCTTGTGGGGAGATTGATGGTGGGACTAAGGTAGTTTCAATATCAGTCACAACTTTCACTATGGCTATCCTTTCTAT CTTCTTCTACTCACATTCTTATTCCCTCATTGCTTTCAATCTCACTCTTCACTCTGCACTGAACACTGAACACTGAACCA AACCCACTGCAACACCTCGTTGCGTTCCAATGGAGGGGACACTCTTCCCCAATAGGCCAGTTCTCCCAGTCCCTGCAAAC AAACCAACACAGTCTCTCAAATTCAAGCCAACTCTCCTCCCTCCTTCTCGCTCTCCACCACAACCACCGCCACCACCACC GTCGTTTCAGCTGGATTCCCTCATCCAACATCTCCAAACCCTCTCTTCAGCTTCAATCACCGCCCACACGCTAACACATG TGCCTCCAATTCTGGACAAGACCCATTTCAGTTCCCTTCAAATTCCATCTGAGACACAGGTCAAACATTCTCGGAGAAAG GTGCCCACTTCGGGTGATGTCACTAGAATTGGTCAGAACCTACTTGAAGATGCAAAGTTTGAATTTTTATCAGATAGAGG TAAGATGATGCTGAATTCAATTGTTGGGTGTCCTTTGAATGATTTGAATGAGTTTTTCAACTCGGTGAAATTTGAGTTGC TTGAAGTTGATTTTCCTAGCTTGTTGAAAGGTTTGGACCTTTCTGGGAACTGGGAGTGGTCATTTTTGTTGTTTGAATGG GTTTGGTTGCATCTTGGGTCTGAAAATATGAGGGTGGATAATCAGGTTGTTGAGCTTATGGTTAGGATATTGGGTAGAGA ATCGCAGCATTCGATTGCGTCTAAGCTGTTTGATTTAATTCCTGTGGAAGAATACTCGCTTGATATTCGGGCTTACACCA CTATTCTTCATGCGTATGCTCGTACCGGCAAGTATAAACGAGCTATTGATATATTTGGAAAGATGAGGGAGACTGGTCTC GAGCCGACTTTGGTCACTTACAATGTTATGCTTGATGTTTATGGCAAGATGGGTCGTTCTTGGGATAAAATATTGGAAAT GTTGGATGAGATGAGGGGTAAAGGGCTCGAGTTTGACGAGTTTACTTGCAGTACTGTGATCTCTGGTTGTGGGAGAGAGG GTATGCTAGATGAAGCGAGGAAGTTTTTCGCTGATTTAAAATTGAATGGCTATAAACCTGGAACGGTTACATATAATTCT ATTCTGCAGGTTTTTGGAAAGGCTGGAGTTTACACAGAGGCCTTGAGCATACTAAAGGAAATGGAGGATAATAATTGCCC ACCTGATTCTGTTACTTACAATGAGCTTGTGGCAGCATATGTAAGAGCCGGGTTTCATGATGAAGGGGCTGCTGTAATTG ATACCATGGCAAGCAAAGGAATAATGCCAAATGCTATTACTTACACTACTGTGATAAATGCGTATGGCAAGTCAGGAAAG GAGGATAAGGCGTTAAAGTTGTTCAGGCAGATGAAGGAGTTGGGTTGTGTTCCTAATATATGCACATACAACGCTGTTCT TGCAATGCTTGGCAAGAAGTCGAGGTCAGAAGATATGGATAAGGTTTTCCGTGACATGAAATTGAATGGATGTGCTCCTA ATCGTGTCACGTGGAACACCATGCTTGCTGTATGTGGAGAGAAGGGTAAGCACAAATATGTTAGCCAGGTTTTGAGGAAA ATGCAAAACTGTGGATTTGAGCCTGACAAAGACACATTCAATACATTAATTAGTGCATATGGTCGGTGTGGATCAGAAGT CGATGCTGCAAAAATGTATGGGGAAATGGTTAAATCAGGCTTTTCTCCATGTGTATCAACTTATAATGCTCTTCTAAATG CTCTTGCCAGGAGAGGTGATTGGAAAGCAGCTGAATCCGTCATTCAGGACATGCAGAACAAGGGCTTTAAGCCTAATGAA ACTTCATACTCGCTCTTGCTTCAATGTTATTCCAAGAATGGAAATGTCATGGGGATACAGAAGGTAGAGAAAGAAATTTA TGATGGCAATGTATTTCCTAGTTGGGTACTTTTGAGAACTCTTGTCCTTGCAAACTTCAAGTGCAGACGGCTTGGGGGAA TGGAAAGGGCATTTAATCAATTGCAAGAGAATGGATACAAACCTGATTTGGTCGTAATTAACTCCATGCTCTCAATGTAT GCCAAAAACAAGATGATTGTGAAGGCCCATGAAATGCTGCATTTTATTCACCAAGTTGGGTTGCAGCCAAATCTTGTCAC CTATAATAGCTTGATGGACTTATATGCCCGTGTGGGTGATGGTTGGAAAGCAGAAGAAATGCTCAAGGGAATTCAAAACT CTGGTCCAAAGCCTGATCTTGTGTCTTATAATACTGTCATCAAGGGATTTTGTAAACAAGGGCTCATGCAGGAGGCAGTC AGAATTCTCTCAGAGATGAGTACTAATGGGATTCAACCATGCATTGTTACATACAATACTTTCTTGGCTGGTTATGCAGG GCAAGGGTTGTTTACTGAAGCAGATGAAGTCCTTAGATATATGATTGAGCACAATTGCAGGCCTAATGAGCTATCTTACA AGACTGTAATTGATGGTTATTGTAAAGCAAATAAGCATAAAGAAGCGATGGACTTTGTGGCAAAGATTAAGCAGATTGAT ATCTCTTTTGATGATCAATCTGTTAAAAGGCTAGCTTCTTGCATTAGGGAGAGTGTGTCTTGACTTTATGAACTATCCCT TTGGGTTTCCTTTATTTCTTTTTTGTTAATACCTCGGCTATATACAACTCGATCAGTCGTACCATAATGTTAATAATTGC ATCATTCCACATTGAGTCCACCTATCAGGGAATAAATTATCTTTTGCTATGTCATGGGAATTTTGTAACAAATATTTGAT AGCTATAGATTTTGTTGCAAGTGTTTGTTCTGTGCATGCTACTCTTCTTCTTACCTTTTTATTTGGTGAAATAAGTTGGA TACTCTAGCATATATCTGATTTCTTTCTTCTTGTTAGACGATTGTAACTACTATGTAGTGTGATATGGATTAGTCAATAT CAGATTCTGCAGTTTC
CDS sequence (LotjaGi6g1v0240800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGGACACTCTTCCCCAATAGGCCAGTTCTCCCAGTCCCTGCAAACAAACCAACACAGTCTCTCAAATTCAAGCC AACTCTCCTCCCTCCTTCTCGCTCTCCACCACAACCACCGCCACCACCACCGTCGTTTCAGCTGGATTCCCTCATCCAAC ATCTCCAAACCCTCTCTTCAGCTTCAATCACCGCCCACACGCTAACACATGTGCCTCCAATTCTGGACAAGACCCATTTC AGTTCCCTTCAAATTCCATCTGAGACACAGGTCAAACATTCTCGGAGAAAGGTGCCCACTTCGGGTGATGTCACTAGAAT TGGTCAGAACCTACTTGAAGATGCAAAGTTTGAATTTTTATCAGATAGAGGTAAGATGATGCTGAATTCAATTGTTGGGT GTCCTTTGAATGATTTGAATGAGTTTTTCAACTCGGTGAAATTTGAGTTGCTTGAAGTTGATTTTCCTAGCTTGTTGAAA GGTTTGGACCTTTCTGGGAACTGGGAGTGGTCATTTTTGTTGTTTGAATGGGTTTGGTTGCATCTTGGGTCTGAAAATAT GAGGGTGGATAATCAGGTTGTTGAGCTTATGGTTAGGATATTGGGTAGAGAATCGCAGCATTCGATTGCGTCTAAGCTGT TTGATTTAATTCCTGTGGAAGAATACTCGCTTGATATTCGGGCTTACACCACTATTCTTCATGCGTATGCTCGTACCGGC AAGTATAAACGAGCTATTGATATATTTGGAAAGATGAGGGAGACTGGTCTCGAGCCGACTTTGGTCACTTACAATGTTAT GCTTGATGTTTATGGCAAGATGGGTCGTTCTTGGGATAAAATATTGGAAATGTTGGATGAGATGAGGGGTAAAGGGCTCG AGTTTGACGAGTTTACTTGCAGTACTGTGATCTCTGGTTGTGGGAGAGAGGGTATGCTAGATGAAGCGAGGAAGTTTTTC GCTGATTTAAAATTGAATGGCTATAAACCTGGAACGGTTACATATAATTCTATTCTGCAGGTTTTTGGAAAGGCTGGAGT TTACACAGAGGCCTTGAGCATACTAAAGGAAATGGAGGATAATAATTGCCCACCTGATTCTGTTACTTACAATGAGCTTG TGGCAGCATATGTAAGAGCCGGGTTTCATGATGAAGGGGCTGCTGTAATTGATACCATGGCAAGCAAAGGAATAATGCCA AATGCTATTACTTACACTACTGTGATAAATGCGTATGGCAAGTCAGGAAAGGAGGATAAGGCGTTAAAGTTGTTCAGGCA GATGAAGGAGTTGGGTTGTGTTCCTAATATATGCACATACAACGCTGTTCTTGCAATGCTTGGCAAGAAGTCGAGGTCAG AAGATATGGATAAGGTTTTCCGTGACATGAAATTGAATGGATGTGCTCCTAATCGTGTCACGTGGAACACCATGCTTGCT GTATGTGGAGAGAAGGGTAAGCACAAATATGTTAGCCAGGTTTTGAGGAAAATGCAAAACTGTGGATTTGAGCCTGACAA AGACACATTCAATACATTAATTAGTGCATATGGTCGGTGTGGATCAGAAGTCGATGCTGCAAAAATGTATGGGGAAATGG TTAAATCAGGCTTTTCTCCATGTGTATCAACTTATAATGCTCTTCTAAATGCTCTTGCCAGGAGAGGTGATTGGAAAGCA GCTGAATCCGTCATTCAGGACATGCAGAACAAGGGCTTTAAGCCTAATGAAACTTCATACTCGCTCTTGCTTCAATGTTA TTCCAAGAATGGAAATGTCATGGGGATACAGAAGGTAGAGAAAGAAATTTATGATGGCAATGTATTTCCTAGTTGGGTAC TTTTGAGAACTCTTGTCCTTGCAAACTTCAAGTGCAGACGGCTTGGGGGAATGGAAAGGGCATTTAATCAATTGCAAGAG AATGGATACAAACCTGATTTGGTCGTAATTAACTCCATGCTCTCAATGTATGCCAAAAACAAGATGATTGTGAAGGCCCA TGAAATGCTGCATTTTATTCACCAAGTTGGGTTGCAGCCAAATCTTGTCACCTATAATAGCTTGATGGACTTATATGCCC GTGTGGGTGATGGTTGGAAAGCAGAAGAAATGCTCAAGGGAATTCAAAACTCTGGTCCAAAGCCTGATCTTGTGTCTTAT AATACTGTCATCAAGGGATTTTGTAAACAAGGGCTCATGCAGGAGGCAGTCAGAATTCTCTCAGAGATGAGTACTAATGG GATTCAACCATGCATTGTTACATACAATACTTTCTTGGCTGGTTATGCAGGGCAAGGGTTGTTTACTGAAGCAGATGAAG TCCTTAGATATATGATTGAGCACAATTGCAGGCCTAATGAGCTATCTTACAAGACTGTAATTGATGGTTATTGTAAAGCA AATAAGCATAAAGAAGCGATGGACTTTGTGGCAAAGATTAAGCAGATTGATATCTCTTTTGATGATCAATCTGTTAAAAG GCTAGCTTCTTGCATTAGGGAGAGTGTGTCTTGA
Protein sequence (LotjaGi6g1v0240800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGTLFPNRPVLPVPANKPTQSLKFKPTLLPPSRSPPQPPPPPPSFQLDSLIQHLQTLSSASITAHTLTHVPPILDKTHF SSLQIPSETQVKHSRRKVPTSGDVTRIGQNLLEDAKFEFLSDRGKMMLNSIVGCPLNDLNEFFNSVKFELLEVDFPSLLK GLDLSGNWEWSFLLFEWVWLHLGSENMRVDNQVVELMVRILGRESQHSIASKLFDLIPVEEYSLDIRAYTTILHAYARTG KYKRAIDIFGKMRETGLEPTLVTYNVMLDVYGKMGRSWDKILEMLDEMRGKGLEFDEFTCSTVISGCGREGMLDEARKFF ADLKLNGYKPGTVTYNSILQVFGKAGVYTEALSILKEMEDNNCPPDSVTYNELVAAYVRAGFHDEGAAVIDTMASKGIMP NAITYTTVINAYGKSGKEDKALKLFRQMKELGCVPNICTYNAVLAMLGKKSRSEDMDKVFRDMKLNGCAPNRVTWNTMLA VCGEKGKHKYVSQVLRKMQNCGFEPDKDTFNTLISAYGRCGSEVDAAKMYGEMVKSGFSPCVSTYNALLNALARRGDWKA AESVIQDMQNKGFKPNETSYSLLLQCYSKNGNVMGIQKVEKEIYDGNVFPSWVLLRTLVLANFKCRRLGGMERAFNQLQE NGYKPDLVVINSMLSMYAKNKMIVKAHEMLHFIHQVGLQPNLVTYNSLMDLYARVGDGWKAEEMLKGIQNSGPKPDLVSY NTVIKGFCKQGLMQEAVRILSEMSTNGIQPCIVTYNTFLAGYAGQGLFTEADEVLRYMIEHNCRPNELSYKTVIDGYCKA NKHKEAMDFVAKIKQIDISFDDQSVKRLASCIRESVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 45 | 45 | - | – | |
| MobiDBLite | 30 | 45 | 16 | - | – | |
| Gene3D | 145 | 324 | 180 | 6.5E-33 | ||
| PANTHER | 186 | 363 | 178 | 1.7E-155 | – | |
| Pfam | 224 | 274 | 51 | 1.3E-16 | ||
| ProSiteProfiles | 225 | 259 | 35 | 12.858 | ||
| TIGRFAM | 228 | 260 | 33 | 7.5E-8 | ||
| SUPERFAMILY | 229 | 432 | 204 | 1.52E-5 | – | |
| ProSiteProfiles | 260 | 295 | 36 | 11.455 | ||
| TIGRFAM | 262 | 296 | 35 | 2.1E-6 | ||
| Pfam | 291 | 320 | 30 | 3.2E-6 | ||
| ProSiteProfiles | 296 | 330 | 35 | 12.134 | ||
| TIGRFAM | 298 | 331 | 34 | 4.8E-7 | ||
| Gene3D | 325 | 413 | 89 | 4.8E-27 | ||
| PANTHER | 330 | 487 | 158 | 1.7E-155 | – | |
| Pfam | 330 | 374 | 45 | 1.5E-11 | ||
| ProSiteProfiles | 331 | 365 | 35 | 11.696 | ||
| TIGRFAM | 333 | 367 | 35 | 1.5E-8 | ||
| ProSiteProfiles | 366 | 400 | 35 | 11.685 | ||
| TIGRFAM | 368 | 402 | 35 | 2.1E-4 | ||
| Pfam | 389 | 449 | 61 | 2.9E-16 | ||
| ProSiteProfiles | 401 | 435 | 35 | 14.14 | ||
| TIGRFAM | 403 | 437 | 35 | 3.9E-12 | ||
| Gene3D | 414 | 518 | 105 | 1.4E-32 | ||
| ProSiteProfiles | 436 | 470 | 35 | 10.786 | ||
| TIGRFAM | 438 | 471 | 34 | 2.2E-7 | ||
| Pfam | 470 | 517 | 48 | 3.4E-10 | ||
| ProSiteProfiles | 471 | 505 | 35 | 10.994 | ||
| TIGRFAM | 473 | 506 | 34 | 4.7E-6 | ||
| PANTHER | 476 | 627 | 152 | 1.7E-155 | – | |
| ProSiteProfiles | 506 | 540 | 35 | 12.255 | ||
| TIGRFAM | 509 | 540 | 32 | 1.4E-7 | ||
| Gene3D | 532 | 608 | 77 | 5.0E-15 | ||
| Pfam | 540 | 588 | 49 | 7.4E-13 | ||
| ProSiteProfiles | 541 | 575 | 35 | 12.66 | ||
| TIGRFAM | 544 | 577 | 34 | 6.8E-10 | ||
| ProSiteProfiles | 576 | 610 | 35 | 8.035 | ||
| ProSiteProfiles | 611 | 645 | 35 | 6.577 | ||
| Gene3D | 613 | 730 | 118 | 4.2E-28 | ||
| PANTHER | 626 | 818 | 193 | 1.7E-155 | – | |
| Pfam | 635 | 692 | 58 | 8.1E-8 | ||
| ProSiteProfiles | 646 | 680 | 35 | 9.197 | ||
| TIGRFAM | 648 | 681 | 34 | 4.2E-4 | ||
| ProSiteProfiles | 681 | 715 | 35 | 10.665 | ||
| TIGRFAM | 683 | 716 | 34 | 7.8E-4 | ||
| Pfam | 712 | 744 | 33 | 1.9E-12 | ||
| ProSiteProfiles | 716 | 750 | 35 | 13.789 | ||
| TIGRFAM | 718 | 750 | 33 | 3.9E-9 | ||
| Gene3D | 731 | 836 | 106 | 3.7E-23 | ||
| Pfam | 750 | 799 | 50 | 1.6E-13 | ||
| ProSiteProfiles | 751 | 785 | 35 | 11.06 | ||
| TIGRFAM | 753 | 787 | 35 | 1.0E-7 | ||
| ProSiteProfiles | 786 | 820 | 35 | 9.339 | ||
| TIGRFAM | 789 | 812 | 24 | 0.0018 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0240800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…