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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0242000 |
| Transcript ID | LotjaGi6g1v0242000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|B1Z700|TSAD_METPB tRNA N6-adenosine threonylcarbamoyltransferase; TrEMBL-Plants: tr|A0A151U9A5|A0A151U9A5_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi6g1v0242000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55423003..55427874) extracted from Lotus japonicus Gifu genome v1.2.
GAGCACGTGACATTTGAGAATGCTTCACGTGCTGCTTAGTCTAAATTAAGATTAGTTAGGCAGTTAGCAAGTTTGTTAAC TGACAGTTATGGATTGTTAACTGAATCTGTTAGAATTAACCCCTTACATTAGTGTTTGTATATATACTGATTTGTGAAAT GAAATACACAAGAGAATCATTTCTCATATTTCTCAGATTTGTTATGGTATCAGATGAATTCACTCCGCATCTTCATCATT CGATTCTCTGTTCTTGATTTTTCTCTTCTCCTTCGTCTCTGCGTTTTGCTTCTGCAGTAGCGTTTCTTCACAACCATGGA GGATGCTGCAAATCCTTTCATGGCGAATGCAAATCCTTTCATGGCGAATCCTTTCTACCTGCATCCTTCTGACAACCCAG GGATTTCTCTTGTCTCACAAGTTCTCACTGGTGACAACTACCGATCATTCGATTCTTGTTCCAGACGAATTGGATCCTCT TTTCCATCCCTGGCAGCGTAACAACAATATCGTGTCTTCTTGGATTCTCAATTCGGTTTCTAAGGACCTCGCCGCGAGCA TCATCTACTCTTCTTCTGCATCTGAGATCTGGAATGATCTCTTTGAGCGGTTCAAGCAGAATAACGGTCCTCGTGTTTTC CAGTTGAAGCGTGACCTTCTCGGCTTGCAACAAGGAGATTTATCAATTTCTCAGTATTACACCAAATTGAAGTCGTTATG GGAAGAGCTTCTTGAGCATCGACCTGCTCATACTTGCAATTGTGGTGGTGTGCAACCTTTGCTGGATTATCTTCACGGTG ACTATGTTCTGGCTTTTCTCCTGGGATTGAATGAGTCCTACTCTCAAATTCGTGGTCAGATTCTACTCATGGATCCTCTA CCACCCATTAATCGCGTTTTCTCCCTCCTCCAGCAAGAGGAAAGGCAGCGTCAAATTGGTAATTCTTCACTTCTTGAAGC TCCTGCTACCATGGCTTGTGCTGTTCAAGCCAATACTGCAACATCTGCATCTTCATCCCATTTTACTGGTGGAAGTAAGT CTCAATCTGGTGGAGTTGATTCCAAGTCCAAATCTCACAAGAAGGATCGTCCTACATGCACTCACTGTGGAATTCTCGGT CACACCAAGGATAAATGTTATCGACTGATTGGTTTTCCTCCACACTACAAGAAGTCTAAGTCCGTTGCTAGTGTCAATGC TGTGACTACTGGCACTGAGGACTCCCCTTCTGCAAATTCTTCTGTGCCTTTTACAGCACAACAATGCCAAGTGTTGTTGC AAATGCTTCAAACACAACTTTCTCATGCACAGCTCCCAGATTCTGCTCCAAATGGTAATTCTGATGATATGATTTTTACC ACTATTTCTCCTTCCACTCTTCCTGTTTCACAGCACACTTGGATCTTAGATTCTGGTGCTTCATCTCACATTACTAGTAG TCTCATCTATTATAATTCCTATAGATTTCTTGACAACAAAACTGTGTTGCTTCCTAACCACACAAGAGTTCCTGTTTTAG CTATTGGAGAGGTTGTTCTATCTCCTCATTTGACTCTTAAAAATGTGCTTTTCATTCCTACATTTCGTGTCAATATAATC TCTGTTAGCTGTTTGTTGAAATTCTCTTCCTTGTATGTATCCATTACTGATACAGCTTTTGTCATCCAGGATCGCCTGCA ATCGAAGATGATTGGCAGGGGTGATATGGAACAAGGTCTCTACATTTACAAGCCAGATTCTGCTGCTCAGAAATCTGCTT TGTCATTGTTAAAACCACATTCTAGTTTGTTTTCCCTTCCTTTAAATAATGGCCAGATTCCATTGCAATCTGAGGCCAAT ATTTTGAATTCTGTTGCAAATGTACCTCTTAGTTTTTCTGATTCATCTCATGTAATCAATACAGTTTCTGAATCAAATAA AATTGCTACTCTTTGGCACAAACGCATGGGGCATTTATCTGATAAAATGCTTAAACTTTTAGGCAATTCTATTTCTTTTC CTGTGCCCGATTCTTTTACAACTTCCTGTTGTGATATATGTCCTTTATCTAAAATGAGACGACTTTCTTTTCCCTCTAAC AATCACATGTCTAAATCTATCTTTGATCTTATACATTGTGATGTTTGGGGTCCCTATCATGTTCACACACATAGTGGCAT GAGGTATTTTCTCACAATTGTGGATGATTACAGTAGGTTTACTTGGATATATCTCTTGGATTCTAAATCAGAGGCTTCTA GGTGTATTAAACTTTTCTTTAACCTTGCACGTACACAATTCGGGGTGCCAATCAAGAAACTTCGAACTGATAATGCACCA GAGTTGTCTTTAGTGCAATTTCTGCAGGAACAAGGCACACAACACCAGTTCAGCTGTCCTTATAGACCACAACAGAACTC AGTGGTTGAGAGAAAGCATCAGCATCTTCTCAATGTAGCAAGGTCTTTGATGTTCCAATCCAGAATACCTTTGGTTTTTT GGGGGGAGTGCATCTCCACTACAGCTTATCTGATTAACAGAACACCTTCTCTGCTTCTGGGCTCCAAGACACCTTATGAG CGGCTTTATGGCACTTTACCAGACTATACACAGGTCAAAACTTTGGGCTGTCTAGTGTATGTGTCTACTCATCTCCATGA GAGGAACAAGTTTTCTCCCCGAGCATATCCTGCAGTATTCATGGGGTATTCTTCTGGTTACAAAGGATATCGAGTTTACA GCTTGCAAACCAGGAAGTTTGCTAGTCCAGGGATGTTAAATTTCAGGAGGATATCTTTCCTTTTGCAGCATTACCTAGTC CTCCTTGTCCATCCTCACTATTTCCGGAAGTAGTACTACCACTTTCTGCAGTTGATACTGGACCTGAAGTCCCTTTACAA ATGCCTCAGGCAGATCCAGATCCTGGCAGCACAGCACAACCTGCTTCTGTTTCTTCCTTCAATCCACAACCACCTTTGAG GAGATCTTCTCGGGTACCAAGGTTACCTACACATCTTCAAGATTATGCTTTGACAGTGACATATCCGATTCAGCATCATG TCACATATGATAACTTGTCATCTTCCTATCTTGCCTATGTCAACCAAGTTTCTTCCATTTATGAGCCCCAATATTATCAT CAAGCTGTGAAATACCCTGAATGGAGGACTGCTATGGCAGTAGAAATTTCTGCACTTGAGTCCAATAATACATGGACTAT TGTTCCTTTGCCTTCTCACAAGCAAGCTATTGGTTGTCGCTGGATTTATAAGGTCAAATATAAGTCTGATGGGTCAGTGG AACGGTATAAGGCACGCTTGGTGGCTAAAGGTTTCACCCAACAGCCAGGGATTGATTTTATTGACACATTCAGTCCTGTA GCTAAGCTTACCACCGTTCGAGTATTGCTCTCTATTGCTGCTGTCAAGGGTTGGACTCTCATTCAATTAGACATTAATAA TGCCTTTTTGAATGGTGACCTTTTTGAAGAGGTCTACATGACACTTCCTCTTGGTTACCCTAAGCAATCTAGCAACGTGG TTTGTAAGTTGAACAAATCTCTCTATGGATTGCGCCAAGCTTCTCGGCAATGGTTCTGCAAGTTTTCCACTGCTTTAAAG ACCTATGGTTTTCAGCAATCAACTAGTGATTATTCTTTCTTTAGCAAGGGTACTGGTCCTTCATTGGTACTCCTTTTGGT TTATGTCGATGACATAATCCTTGCTGGTCCAGATTCAAGGAAATTGCAAGAGGTTCAAGCTCATTTAGCAAAGACCTTCA AGTTGAAGGTATTAGGAGACATGAAATACTTCTTAGGTCTTGAAATAGCCAGATCAAAAAGAGGAATTCTTTTAACACAA CGAAAATATGCTCTTCAACTGTTGGATGATACAGGGAATATGGGCTGCAAGCCACAGGTTTTACCCATGGATCCTAATGT CAAGCTCAACTCAACAGATGGGGAACCACTCACAGATGTGACTCTTTATAGGAGGCTAATCGGAAGGCTCATGTATCTTA CAATTTCAAGGCTAGATATCACCTATGCTGTACACAAACTCAGTCAATTCATGTCACATCCAAGAACACCTCATCTACAA GCTGTTTATCATGTCATTCATTACTTGAAAGGCAGTCCTGGCCAGGGTCTTCTTTTTTCTGCTTCTTCCAACCTTCGACT CACAGCCTTTTCTGATGCAGACTGGGGTGGTTGTCTGGAGACAAGAAGATCAACTACTGGTTACATGGTTTTCATTGGTG ATTCCTTGATTTCCTGGAAATCAAAGAAGCAACCCACAGTTGCCCGCTCTTCTGCTGAGGCTGAATACCGAGCTTTGGCC TCAGTCACTTCTGAATTGTTATGGATGAGACAACTGCTTAGGGTGTTTGAAATACAAGTCCCTTCTGTTATGCTTTTCTC AGACAATGTCTCAGCCATTGCTTTAGCATCCAACCCCACAGCTCATGAACGATCTAAGCACGTTGACATTGATGTCCACT TCATCAGAGAACATGTTACTTCTGGGTTTCTGGTCTTAAATCATGTGCCCTCTTCTCAGCAGCTAGCAGATTGCCTTACC AAACCAATTGCAGGGCCAAGATTTAAGGAACATATGGTCAAGTTGGGTGTTGTTGACATATATCTCCCAACTTGAGGGGG AGTATTAGAGCACGTGACATTTGAGAATGCTTCACGTGCTGCTTAGTCTAAATTAAGATTAGTTAGGCAGTTAGCAAGTT TGTTAGGCAGTTATGGATTGTTAACTGACAGTTATGGATTGTTAACTGAATCTGTTAGAATTAACCCCTTACATTAGTGT TTGTATATATACTGATTTGTGAAATGAAATACACAAGAGAATCATTTCTCATATTTCTCAGATTTGTTAACC
CDS sequence (LotjaGi6g1v0242000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGCAAATCCTTTCATGGCGAATGCAAATCCTTTCATGGCGAATCCTTTCTACCTGCATCCTTCTGACAACCCAGGG ATTTCTCTTGTCTCACAAGTTCTCACTGGTGACAACTACCGATCATTCGATTCTTGTTCCAGACGAATTGGATCCTCTTT TCCATCCCTGGCAGCGTAACAACAATATCGTGTCTTCTTGGATTCTCAATTCGGTTTCTAAGGACCTCGCCGCGAGCATC ATCTACTCTTCTTCTGCATCTGAGATCTGGAATGATCTCTTTGAGCGGTTCAAGCAGAATAACGGTCCTCGTGTTTTCCA GTTGAAGCGTGACCTTCTCGGCTTGCAACAAGGAGATTTATCAATTTCTCAGTATTACACCAAATTGAAGTCGTTATGGG AAGAGCTTCTTGAGCATCGACCTGCTCATACTTGCAATTGTGGTGGTGTGCAACCTTTGCTGGATTATCTTCACGGTGAC TATGTTCTGGCTTTTCTCCTGGGATTGAATGAGTCCTACTCTCAAATTCGTGGTCAGATTCTACTCATGGATCCTCTACC ACCCATTAATCGCGTTTTCTCCCTCCTCCAGCAAGAGGAAAGGCAGCGTCAAATTGGTAATTCTTCACTTCTTGAAGCTC CTGCTACCATGGCTTGTGCTGTTCAAGCCAATACTGCAACATCTGCATCTTCATCCCATTTTACTGGTGGAAGTAAGTCT CAATCTGGTGGAGTTGATTCCAAGTCCAAATCTCACAAGAAGGATCGTCCTACATGCACTCACTGTGGAATTCTCGGTCA CACCAAGGATAAATGTTATCGACTGATTGGTTTTCCTCCACACTACAAGAAGTCTAAGTCCGTTGCTAGTGTCAATGCTG TGACTACTGGCACTGAGGACTCCCCTTCTGCAAATTCTTCTGTGCCTTTTACAGCACAACAATGCCAAGTGTTGTTGCAA ATGCTTCAAACACAACTTTCTCATGCACAGCTCCCAGATTCTGCTCCAAATGGATCGCCTGCAATCGAAGATGATTGGCA GGGGTGA
Protein sequence (LotjaGi6g1v0242000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQILSWRMQILSWRILSTCILLTTQGFLLSHKFSLVTTTDHSILVPDELDPLFHPWQRNNNIVSSWILNSVSKDLAASI IYSSSASEIWNDLFERFKQNNGPRVFQLKRDLLGLQQGDLSISQYYTKLKSLWEELLEHRPAHTCNCGGVQPLLDYLHGD YVLAFLLGLNESYSQIRGQILLMDPLPPINRVFSLLQQEERQRQIGNSSLLEAPATMACAVQANTATSASSSHFTGGSKS QSGGVDSKSKSHKKDRPTCTHCGILGHTKDKCYRLIGFPPHYKKSKSVASVNAVTTGTEDSPSANSSVPFTAQQCQVLLQ MLQTQLSHAQLPDSAPNGSPAIEDDWQG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 30 | 19 | - | – | |
| Phobius | 31 | 348 | 318 | - | – | |
| PANTHER | 60 | 309 | 250 | 4.2E-76 | – | |
| PANTHER | 60 | 309 | 250 | 4.2E-76 | – | |
| Pfam | 65 | 138 | 74 | 3.5E-12 | ||
| MobiDBLite | 229 | 259 | 31 | - | – | |
| MobiDBLite | 229 | 245 | 17 | - | – | |
| MobiDBLite | 329 | 348 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0242000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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