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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0244400 |
| Transcript ID | LotjaGi6g1v0244400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polygalacturonase QRT3; TAIR: AT4G20050.5 Pectin lyase-like superfamily protein; Swiss-Prot: sp|O49432|QRT3_ARATH Polygalacturonase QRT3; TrEMBL-Plants: tr|I1L157|I1L157_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0244400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55701958..55705845) extracted from Lotus japonicus Gifu genome v1.2.
CTATGATGTCAGGGAAAATTAAAAGATTTCATGAAAAAAAGTTACAAAGCAACCTTCACTAATATCTTACTCCAAATGAT GAGGGTGTTGTATGTATGATCCAATATGAAAATGTCCCTTTACATTTTCCTATCAAATCTTAGTTACCCCTACTTCTTTT ATGTCTCCCTATTCCCTCTTTTCATTTACCTTATTTAAAGGACCACAGAACTTGAATCCTTTTCCCCAACTGTTTCATAC TAACCTGATCAGAACCTCAAACCTCTCACCAACTACACCAACAATGGCAAGAAAACCTTCTCTGGTCTTGTCCTTGTTTC TGTGGGTGTCTTGTTTCATTGTGATTGGTGCTTATGGGGAGAAGAACTTGCCTCATATGACAATTTCTGGTGGCAAACAT CATGTAGCAATACAAAGACTTCAGTCATTTAAGGCCTCTCTAACTAGACATGATTCCATTGCTTCAGCACCATCTTCATT CTCAGCCTCTTCTAGCCCTTCTCCTTCTCCATCTCCTCAGCCATTTCAGGTAATTCAATCTTGCACACAGCCTTTGGTTT AGTCTATTTTTGGTTCCTGGGAAAATATCAAATATTTGATATTATTTTTTTGTCATGCAGGGTGTGAACAATCCAAGGGT GTACCATGTGACATCTTATGGGGCAGACCCTTCAGGCAATTCAGACAGCACTGAAGCACTCCTTGCAGCCATAGCAGATG CAGCCAAGGGTCCAAGTGAAGGACGTTTGATAGAAGGTATCAAAAACCTTGGAGGTGCACAGGTTAATCTTGAGGGTGGA AATTACCTGATCAGCAAGTCACTGCAGTTACCGGTAGCTGGGGTGGGGAACCTCATGGTATGACAAATATGAATTATTCT TTGTGTTTCTAATTTCATCCATGAATTATTTTTTCTATGGAACATATGACTTTGTGTAAATCGTTTGTAAATGTACAATG TGAAAAGTATGTACCAAAGTTAGCTATTCATCAATATTTGACAATTTGCATGGTGTTATAAGACTTTAGGCTAGGTGGTT TGAGTCCGTGTTTGGAAACTCCTCTACAATCAATTTTGAAGACAAAATCAATTTTGAGGATGTTCTGTGAGTAGCTTTTG AATTTCGAAATTGATTTTGTTAAAAGGGATTGTGAGTAGCTTCTGAATTTCAGTATTGGTGATTCAAACATGTTAAGATT TTAGAATATTTTAGTTGTGATGGTGAAACTTTGGTCTAACTAGACCAAGAAAATATTGAATAAGGATTGCTGTTGAGATT TTAGAAAAATATTCTCCTACTTTCTTTTTGGTCACTACTTTTTGTTCTTTTATGAATGGAAGAGTTTTATTCTTTTGACA ATTCTCATGACATAAAGTGGAAGAAAGTCAAACAACTACACATTTTTTTATTTGTTTACTCCCAATAGGGAATCCAAAAG GTCTCAATTTTTGACATCTAACTTTGATTTTTGTTTGTAAATTGGTGAAAAAACAGATACATGGGGGAACCATAAGAGCC TCAAATAATTTTCCAGCAGATGGCTATATCATTGATTTGTCAGCATCACCTTCATCATCCTACAATTTTGAGTACATAAC TCTCAAGGACCTATTGTTGGACTCTAACTTCAGGGGAGGAGGCATTTCAGTCATAAACTCACTAAGAACAAGCATAGACA ACTGTTACATCACACATTTCACCACCAATGGAATTTTAGTACAAAGTGGCCATGAAACCTACATCAGGAACTCCTTCCTT GGCCAACACATAACTGCCGGTGGCGATAAACATGAAAGGAACTTCTCAGGAACTGGAATAAACATCCAAGGTAATGATAA TGCTGTCACAGATGTTGTAATTTTCTCAGCTGCTATAGGAATAATGGTTACTGGTCAAGCCAACACTTTTTCTGGTGTGC ATTGTTACAATAAGGCCACTGGCTTTGGAGGTACTGGAATTTATTTGAAACTTCCCGGTTTGACGCAAACCCGGATCGTG AATTCTTACATGGATTACACCAGTATTGTTGCCGAAGACCCGGTTCAACTCCATATCTCTAGCAGTTTCTTCCTTGGTGA TGCCAATATTGTTCTGAAATCTATGAAGGGGGTTGTGAATGGTGTTACTATTGTTGATAACATGTTCTCAGGCTCAAACA AGGAAGTTGAAATTGTTCATCTGGACCAATCAAATAGTGGTTTCAATCAAGTTGATCAGGTTATTGTTAACAGGAACATT GTGAGAGGAATGAAATTAAAGGCCACAGTTGCGAAAAAGTCTATGCAAGGGAATGGAACCTCATGGAGTGTTGATTTTAA CGATGTTCTTCTTTTCCCTAACCTTATAAAAAATGTTCAGTACTCTTTAAGCTCCACAGGCAGTACCTTTCCAAACCATG CTCTCAGGAATGTGTCCGAGAATCGCGTTGTGATTGAAACAAATGAAGCAGTATCTGCAAATGTTTTTATCACTGTGGAT CAAAGCATGGCAAGTTGAAGAGGTTTGAAGCTGGCGGCATAAATGTTTGTTTAACAAGTCCTGACTCATTAGTTCAGATT GTAGAGGGAATTGTGCATACCTTATGAAAGAATTATGCATTCTCTCACATATTTTTATACTTCATTTTTCAGTTTCTCTT TTCTTTTATCATATTTTCTATTAGATCTTTTACTTTTTTCTTTCTCTTTCATTCCTATCTCTCTTCTTACTTACCAAGGT GTATACATCCCTAAAGGATGTCAAGCAATTTTTATTCACCATATATTATAATAGTATTTAAGTAATGGTGTAATTGATAG AAAAAATAAGTACTTTTTCAAGAGTTTAGTTCATAAAATTGAGTAGTCAAAGTCTCAAAACTCATGTGCCAAAAATTTCA AATGCTTTTCTTTCAACTTCATCATTATAATGTAATGCATTTTTTATTTTTCAAAACACATTTGTTGGACCAGAAGTAGT AATTGAGTATAGAAGATAATCTAGACCGCTAAGATAAAATTGTGCTAGGGCCATAACTTCCACATGGTAGTTGAATAGGT TAGTTGAAGCAGCTGAGATCTACAGGTTTGAAAGAGCAAGTATAACTACTCTTCTCTATTTTGAGTTTCTAGGCTTGGCT GCGTTACTTTCTTAGATTCTTACATGTTGTTCAATCATACTCAATTTGAAAAATATGATCTAAGTTAAAATTAGAATTTT CAGAGCCAAATTTAATAATTTACAGTGCAAATCTAGCAACTCCAACAAAAGCTTCCTGAGATATTGTGAATGTAAATGCT ACAACTTGATTATCCTTATTCCTTAATTTAACTCCAAAAAAATCCCAAAAAGAAGGCTATGTGATGGCAAGTTGTTAGCC AAGATTCAAGCTGAGGTGTGTGATTTTTTTAATGGATCTCAAATTTGAAACGCCTAAGGTAGCCAACGATACTCACATTT AATGGAGTATCAAATTGTTAATTGGGCACATATATACACTACTATATACACATGTTTGTTCATTTACCAAGGGAGCTATC AAGATGTGTGATCTTGAACCTCCTATATTTATCAATAGACCAATACATAACAACTAACTAGAATATTTTTCTTTGGGCCA TATTGGAAATTAAACTTCCTTTTGGATTTGACTACTTGATTTGGGGAAGAGTTGCAAAGCCTATCTTTCAAAATGGAAGG CAGACCCAAAAAGAAGAAGAAGAAAATGAGATGTGGCCTATTCAATCCAAAACAGCCACACCTCACAGGACTACAATTTG GGCCATATTTCTAGAATTAAAAGTAGAAAAGATAAAACTAAGAAAGTCTACATTACTGAATCATATTAGGAATTCAAATT CCTAGACATGCTCTGTATGTTCCATTGTGGAACTTTGCAGATCTTGCA
CDS sequence (LotjaGi6g1v0244400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCCCTATTCCCTCTTTTCATTTACCTTATTTAAAGGACCACAGAACTTGAATCCTTTTCCCCAACTGTTTCATAC TAACCTGATCAGAACCTCAAACCTCTCACCAACTACACCAACAATGGCAAGAAAACCTTCTCTGGTCTTGTCCTTGTTTC TGTGGGTGTCTTGTTTCATTGTGATTGGTGCTTATGGGGAGAAGAACTTGCCTCATATGACAATTTCTGGTGGCAAACAT CATGTAGCAATACAAAGACTTCAGTCATTTAAGGCCTCTCTAACTAGACATGATTCCATTGCTTCAGCACCATCTTCATT CTCAGCCTCTTCTAGCCCTTCTCCTTCTCCATCTCCTCAGCCATTTCAGGGTGTGAACAATCCAAGGGTGTACCATGTGA CATCTTATGGGGCAGACCCTTCAGGCAATTCAGACAGCACTGAAGCACTCCTTGCAGCCATAGCAGATGCAGCCAAGGGT CCAAGTGAAGGACGTTTGATAGAAGGTATCAAAAACCTTGGAGGTGCACAGGTTAATCTTGAGGGTGGAAATTACCTGAT CAGCAAGTCACTGCAGTTACCGGTAGCTGGGGTGGGGAACCTCATGATACATGGGGGAACCATAAGAGCCTCAAATAATT TTCCAGCAGATGGCTATATCATTGATTTGTCAGCATCACCTTCATCATCCTACAATTTTGAGTACATAACTCTCAAGGAC CTATTGTTGGACTCTAACTTCAGGGGAGGAGGCATTTCAGTCATAAACTCACTAAGAACAAGCATAGACAACTGTTACAT CACACATTTCACCACCAATGGAATTTTAGTACAAAGTGGCCATGAAACCTACATCAGGAACTCCTTCCTTGGCCAACACA TAACTGCCGGTGGCGATAAACATGAAAGGAACTTCTCAGGAACTGGAATAAACATCCAAGGTAATGATAATGCTGTCACA GATGTTGTAATTTTCTCAGCTGCTATAGGAATAATGGTTACTGGTCAAGCCAACACTTTTTCTGGTGTGCATTGTTACAA TAAGGCCACTGGCTTTGGAGGTACTGGAATTTATTTGAAACTTCCCGGTTTGACGCAAACCCGGATCGTGAATTCTTACA TGGATTACACCAGTATTGTTGCCGAAGACCCGGTTCAACTCCATATCTCTAGCAGTTTCTTCCTTGGTGATGCCAATATT GTTCTGAAATCTATGAAGGGGGTTGTGAATGGTGTTACTATTGTTGATAACATGTTCTCAGGCTCAAACAAGGAAGTTGA AATTGTTCATCTGGACCAATCAAATAGTGGTTTCAATCAAGTTGATCAGGTTATTGTTAACAGGAACATTGTGAGAGGAA TGAAATTAAAGGCCACAGTTGCGAAAAAGTCTATGCAAGGGAATGGAACCTCATGGAGTGTTGATTTTAACGATGTTCTT CTTTTCCCTAACCTTATAAAAAATGTTCAGTACTCTTTAAGCTCCACAGGCAGTACCTTTCCAAACCATGCTCTCAGGAA TGTGTCCGAGAATCGCGTTGTGATTGAAACAAATGAAGCAGTATCTGCAAATGTTTTTATCACTGTGGATCAAAGCATGG CAAGTTGA
Protein sequence (LotjaGi6g1v0244400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPYSLFSFTLFKGPQNLNPFPQLFHTNLIRTSNLSPTTPTMARKPSLVLSLFLWVSCFIVIGAYGEKNLPHMTISGGKH HVAIQRLQSFKASLTRHDSIASAPSSFSASSSPSPSPSPQPFQGVNNPRVYHVTSYGADPSGNSDSTEALLAAIADAAKG PSEGRLIEGIKNLGGAQVNLEGGNYLISKSLQLPVAGVGNLMIHGGTIRASNNFPADGYIIDLSASPSSSYNFEYITLKD LLLDSNFRGGGISVINSLRTSIDNCYITHFTTNGILVQSGHETYIRNSFLGQHITAGGDKHERNFSGTGINIQGNDNAVT DVVIFSAAIGIMVTGQANTFSGVHCYNKATGFGGTGIYLKLPGLTQTRIVNSYMDYTSIVAEDPVQLHISSSFFLGDANI VLKSMKGVVNGVTIVDNMFSGSNKEVEIVHLDQSNSGFNQVDQVIVNRNIVRGMKLKATVAKKSMQGNGTSWSVDFNDVL LFPNLIKNVQYSLSSTGSTFPNHALRNVSENRVVIETNEAVSANVFITVDQSMAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 47 | 47 | - | – | |
| TMHMM | 48 | 65 | 18 | - | – | |
| Phobius | 48 | 66 | 19 | - | – | |
| PANTHER | 49 | 535 | 487 | 6.8E-265 | ||
| PANTHER | 49 | 535 | 487 | 6.8E-265 | – | |
| Phobius | 67 | 535 | 469 | - | – | |
| MobiDBLite | 103 | 126 | 24 | - | – | |
| SUPERFAMILY | 127 | 492 | 366 | 2.99E-19 | ||
| Gene3D | 131 | 530 | 400 | 2.1E-20 | ||
| Pfam | 133 | 351 | 219 | 7.1E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. |
Expression pattern of LotjaGi6g1v0244400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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