Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0244600 |
| Transcript ID | LotjaGi6g1v0244600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Haloacid dehalogenase-like hydrolase domain-containing protein 3; TAIR: AT5G44730.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q5E9D6|HDHD3_BOVIN Haloacid dehalogenase-like hydrolase domain-containing protein 3; TrEMBL-Plants: tr|I3TAF4|I3TAF4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0244600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55726332..55730292) extracted from Lotus japonicus Gifu genome v1.2.
TAAAAATTGGACATAAATTATTATTATATAAATCTAGGGGTCACTCAATTCCTACTTGCATCCCGGGTTTGGGAAAGAAA GAAAAACAAGGCATGAAACAACAACAACAACAACATCACTGCCCACACCATCTATTTTTCTATTCTCTTCACCATTTATA TACAATGAAATTCTAGCTCAACCTTCTTCTTCTGGAGCATTTCCGATTTCGGACACAAAGCATCATCAACCTTTCACTGT TCTGGTAAGAACTAGATTCGTTTCCTTGTCTGAGGTTTGGAATATGAAAAATTAATCTGTCTCATTTGCAACAGGGGATG ATAAAAAAATAATCTTTTCTGTGAATCATTTCTGGGTTTTGATCTAAACAAACCATGTAGTAGTGCATGTGTGAGTTTTC ATGGAGCTTTGTTTTGTTTTGAATGATGCGACATGCATTTCGATGTTGCCTATGTTGTTGTTCTGATGTGTTTTTGTGCT GTTTTGGATTACCTGTTCTGTTGGGCATTTTCACAAATAGTAGATGTGGGCATTTCTTTCTTCTTTTTTGTTCTTACCTC TGAGCTGGTTTGGTCACATTGTTTGCCTCTTAGTCCAATTTGACTCAACCCCCATTTAGATTCTACCTTTACTTTTGTTG TCCATGCCTGGAATTGGAAATAAGAATGTGGGTTTGTTTGCATCAACTAGTATAGATTTTGAAAATGAACATTATTGGGG GGTGATCATTAGCCAAACATTGAGTTAGAGGATAAGTGGGTTGATTTCAGATTCTGGACTGTAGTGATGGTAGAGACTAG AGAAAATGTTACATTTGCAATGAGTTACATTAGGCAAGATTATGATTTATTTGACTTGTGATGATTGCAACATAAGACTC ATAGATAGCAGACAATGTAGGTTTGTGAAGCTGTGTAAATATTTCTCTCTACCATGACCATGGGAGTCCTGTGTCAAAAA ATGACTGCATTTAGGTGGTCAACCAGAAAGGAAGTTTAGAATTGAGATTTATCTTATAATTTCTTGAGCCAGTTAGCTTC TTTAAAGTTGTGTTTGATTACCTATTTTCCATAAGTTTAACATTTTACTGGCATTAAGTATAAAGTTATGACCAAATGTA GGTCTAGAAGAGATGCCTTCTTGAAGACAGCATCTTTCAGGATAGTATGGTATATCTTTGAGTCTTTCATATTTGTTTAA AATTATCAGTGTAAATTAAAATGCCTTTTCCTCTCAGAGCAAGTGCATTAGTGCCACTATGTTTTTTATAATCACTTGTA GCATCTAAAATCCATTTCTTTTTGTTTTCTGCTTTCATGGATCAATAACTTAAAATCATATTTAATATCAGAGCCAGGTT GTCTCTAGTAGATCACAATTTAATATTTATTTGAAAAGTTGTTTTGCACTATGAAATCATTTAAAATGCATATTTAAAAA TGTCATCTCCTTGCCCTTACCCTTTATTTGTGCCAAACAATTTACTAAACCATATCATCATGTTAGCTCTTTCTTAATTG ATATTTCTTTCAACTAACAAGGTAATTTTGGAATAACATATGCAGGCTTTAATATCAATTTTGAAGGAGTTTAATACCTT ACCCTATTCGTTGCTTCCTTGAAATTTATATTGGCATTGCGGCACTGGAAATTCTTCTGAACAACCTAACTGACGAAGGG CCTCTCTATAATTTGTGCTACCATGTCAATATTGGCTAGACTGCGCTGTGTCACTGTAGATGTTACCGGCACCCTAATGG CTTACAAAGGGGAGCTTGGTGACTATTATTGCATGGCCGCTAAAGCTGCTGGCCATCCGTGCCCAGACTACAAACGTGTA CATGAGGGATTTAAGCTTGCATATAAGGACATGGCAAAGAAGTATCCCTGTTTCGGGTTTGGAGCCAAAATGCCGAACAT TGTGTGGTGGAAAACCTGCGTGCGTGATTCTTTTGTCAGGGTAAGATATTTGTCAAAGTCATTACAGTGGGTGTTTTGCA ATTTACATGTCAAGATGTTGTTGCCATTTACATGGGCACACAATTAGTTTGGTTCTAATTTTGTCTTCAGTAACAATGAA TGCACTCAAACAATAAATGTTTGACCTCCGCCTTTATTCTGTGTTCATCTGTATATTATACAATACCTGCATGCAATCCC ATCTGCGAAAATTCTTTGAATGTCATGAAGGAGAAATTTTGTTTTTCTGGCAGGCTGGATATGAATATGATGAGGAAACA TTTGAGAAAATTTTCAGACGCATATATGCATCTTTTGGGTCATCTGCTCCTTATACTGTCTTTCCGGACTCCCGACCATT TCTTAGATGGCTTCGTGGAAAGGGTGTCAAAGTTGGCCTCGTGAGCAATGCAGAGTATCGATATCCAGATGTGATTCTTC CAGCTATGGGTATAAATGAGGTAAACTTTCCATTATTTTTCTGAAGTTTTCCATCAGACTTTATATAAAAGATAAATTTA CATTCAGCAATTTAGCATTGTTACAGAGACAGACTCCGCCTATGCTTTTGCGTAGCCGGTTTTGAGCCTGTATAAAGGAG GAAAGTTGTGTTAGGCTTTTAGCAGCCAACATAAAACTCGCTGATATCTTAATATGGATTTGTGATCCATATAGCCGACC TCACCTAGTGGGATAAGGCTTTGGTTACGGAGCATAGAGTTGTGCATGCAAGCAAGTCATTTATTGAAAATGTTGAGAGA GCACACTTCCATTTTTAAACACAATGCGATTATTGATTTATGGTCTATGAATTTCAATGAATCCCTGACACATTGAACCA CATCTGAAGGAAATTATGTTGAGCTGTAGTCTATTCAGCACTAAAATTTGTTTATCACTAAAAGCATCTTTGTTCTTATA TATTTGTGATGTGGTTTTAATAAGTGCTGCCTTTACACTTTCACCCCAATAGGCAAACATGTCTGATTGTTATGATGTTT GATACTGAAGGGATTATGTTGAGCTGTAGTCTATTCAGCACTAAAATTTGTTTATCACTAAAAGCATCTTTGTTCTTATA CATTTGTGATGTGGTTTTAATAAGTGCTGCCTTTACACTTTCACCCCAATAGGCAAACATGTCTGATTGTTATGATGTTT GATACTGAAGGGATCTGAGTGGGACTTTGGCGTGTTTTCTGGTCTTGAAGGCGTTGAGAAGCCAAACCCAAAAATTTATG AGATTGCACTTGAGAGGGCTGGAAATATTAAACCTGAAGAAACTTTGCATATTGGCGATAGCATGCGGAAAGACTATGAG CCAGCTAAGAGCATAGGGATGCATGCACTATTGTTGGACAGATTCAAGACACCAGATGCTGATGAGTGGAGGAAATCTGG GGCAGTTGTTCTTCCCGATTTGGAGGCAACACAAGAATGGCTTTCTTCAGAAAAGTCATCTTGGTAGAGGCTCTATCTTT GGTGAGGTAGTATATTTATGAATAATTTTCCCCCTCTAATGGTTTAACTGTGACCTGTGACATTCCAGTGGGTGTCGCAA TTGCATGTGTCTGAAATCTGAATATTGCTCTGTTCAGCCATGCTTCAGAATCTGTTATGGTTGTTAAGAGTGATGTAGCT CAAATATACCTTTGTAATACAAATATATTCAAAGGTTACTTTCTCTTCCTTGGTTATGTTGTTTTCTACAGTTACTTGGC TTCCCATTTATTTTGCTTCTCCAGTTGCAGAATATTAGAACGCGATTGAACATAAGTTCGTGCAAGTTGTCTCGCCAAAA AAATGTCTGAGAAAGTATCCCATCACGTAACTAGTTAGTAGTACACCAATTTAATGCACAAGTAACACAAATTGTCCAAC TCATGAAAAGAACCAGCTCTCTTTGATGCAAGAAAATGGTCTTTACTCAACATGAATTCGATGCATGCAACAACTACAAG TGAATACTAAACTTCGTACAATAGATAAATGCGATCTCAAC
CDS sequence (LotjaGi6g1v0244600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAATATTGGCTAGACTGCGCTGTGTCACTGTAGATGTTACCGGCACCCTAATGGCTTACAAAGGGGAGCTTGGTGA CTATTATTGCATGGCCGCTAAAGCTGCTGGCCATCCGTGCCCAGACTACAAACGTGTACATGAGGGATTTAAGCTTGCAT ATAAGGACATGGCAAAGAAGTATCCCTGTTTCGGGTTTGGAGCCAAAATGCCGAACATTGTGTGGTGGAAAACCTGCGTG CGTGATTCTTTTGTCAGGGCTGGATATGAATATGATGAGGAAACATTTGAGAAAATTTTCAGACGCATATATGCATCTTT TGGGTCATCTGCTCCTTATACTGTCTTTCCGGACTCCCGACCATTTCTTAGATGGCTTCGTGGAAAGGGTGTCAAAGTTG GCCTCGTGAGCAATGCAGAGTATCGATATCCAGATGTGATTCTTCCAGCTATGGGTATAAATGAGGGATCTGAGTGGGAC TTTGGCGTGTTTTCTGGTCTTGAAGGCGTTGAGAAGCCAAACCCAAAAATTTATGAGATTGCACTTGAGAGGGCTGGAAA TATTAAACCTGAAGAAACTTTGCATATTGGCGATAGCATGCGGAAAGACTATGAGCCAGCTAAGAGCATAGGGATGCATG CACTATTGTTGGACAGATTCAAGACACCAGATGCTGATGAGTGGAGGAAATCTGGGGCAGTTGTTCTTCCCGATTTGGAG GCAACACAAGAATGGCTTTCTTCAGAAAAGTCATCTTGGTAG
Protein sequence (LotjaGi6g1v0244600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSILARLRCVTVDVTGTLMAYKGELGDYYCMAAKAAGHPCPDYKRVHEGFKLAYKDMAKKYPCFGFGAKMPNIVWWKTCV RDSFVRAGYEYDEETFEKIFRRIYASFGSSAPYTVFPDSRPFLRWLRGKGVKVGLVSNAEYRYPDVILPAMGINEGSEWD FGVFSGLEGVEKPNPKIYEIALERAGNIKPEETLHIGDSMRKDYEPAKSIGMHALLLDRFKTPDADEWRKSGAVVLPDLE ATQEWLSSEKSSW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 250 | 250 | 5.1E-146 | – | |
| PANTHER | 1 | 250 | 250 | 5.1E-146 | – | |
| PRINTS | 7 | 18 | 12 | 4.1E-7 | ||
| Gene3D | 8 | 221 | 214 | 1.0E-51 | ||
| TIGRFAM | 8 | 216 | 209 | 7.3E-63 | ||
| SUPERFAMILY | 8 | 243 | 236 | 1.36E-34 | ||
| Pfam | 8 | 210 | 203 | 1.8E-16 | – | |
| Gene3D | 23 | 108 | 86 | 1.0E-51 | – | |
| CDD | 119 | 223 | 105 | 1.10535E-37 | – | |
| PRINTS | 126 | 139 | 14 | 4.1E-7 | ||
| TIGRFAM | 128 | 211 | 84 | 2.2E-8 | ||
| PRINTS | 159 | 175 | 17 | 4.1E-7 | ||
| PRINTS | 206 | 219 | 14 | 4.1E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi6g1v0244600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…