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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0244600 |
| Transcript ID | LotjaGi6g1v0244600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Haloacid dehalogenase-like hydrolase domain-containing protein 3; TAIR: AT5G44730.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q5E9D6|HDHD3_BOVIN Haloacid dehalogenase-like hydrolase domain-containing protein 3; TrEMBL-Plants: tr|I3TAF4|I3TAF4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0244600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55728034..55729758) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCAATATTGGCTAGACTGCGCTGTGTCACTGTAGATGTTACCGGCACCCTAATGGCTTACAAAGGGGAGCTTGGTGA CTATTATTGCATGGCCGCTAAAGCTGCTGGCCATCCGTGCCCAGACTACAAACGTGTACATGAGGGATTTAAGCTTGCAT ATAAGGACATGGCAAAGAAGTATCCCTGTTTCGGGTTTGGAGCCAAAATGCCGAACATTGTGTGGTGGAAAACCTGCGTG CGTGATTCTTTTGTCAGGGTAAGATATTTGTCAAAGTCATTACAGTGGGTGTTTTGCAATTTACATGTCAAGATGTTGTT GCCATTTACATGGGCACACAATTAGTTTGGTTCTAATTTTGTCTTCAGTAACAATGAATGCACTCAAACAATAAATGTTT GACCTCCGCCTTTATTCTGTGTTCATCTGTATATTATACAATACCTGCATGCAATCCCATCTGCGAAAATTCTTTGAATG TCATGAAGGAGAAATTTTGTTTTTCTGGCAGGCTGGATATGAATATGATGAGGAAACATTTGAGAAAATTTTCAGACGCA TATATGCATCTTTTGGGTCATCTGCTCCTTATACTGTCTTTCCGGACTCCCGACCATTTCTTAGATGGCTTCGTGGAAAG GGTGTCAAAGTTGGCCTCGTGAGCAATGCAGAGTATCGATATCCAGATGTGATTCTTCCAGCTATGGGTATAAATGAGGT AAACTTTCCATTATTTTTCTGAAGTTTTCCATCAGACTTTATATAAAAGATAAATTTACATTCAGCAATTTAGCATTGTT ACAGAGACAGACTCCGCCTATGCTTTTGCGTAGCCGGTTTTGAGCCTGTATAAAGGAGGAAAGTTGTGTTAGGCTTTTAG CAGCCAACATAAAACTCGCTGATATCTTAATATGGATTTGTGATCCATATAGCCGACCTCACCTAGTGGGATAAGGCTTT GGTTACGGAGCATAGAGTTGTGCATGCAAGCAAGTCATTTATTGAAAATGTTGAGAGAGCACACTTCCATTTTTAAACAC AATGCGATTATTGATTTATGGTCTATGAATTTCAATGAATCCCTGACACATTGAACCACATCTGAAGGAAATTATGTTGA GCTGTAGTCTATTCAGCACTAAAATTTGTTTATCACTAAAAGCATCTTTGTTCTTATATATTTGTGATGTGGTTTTAATA AGTGCTGCCTTTACACTTTCACCCCAATAGGCAAACATGTCTGATTGTTATGATGTTTGATACTGAAGGGATTATGTTGA GCTGTAGTCTATTCAGCACTAAAATTTGTTTATCACTAAAAGCATCTTTGTTCTTATACATTTGTGATGTGGTTTTAATA AGTGCTGCCTTTACACTTTCACCCCAATAGGCAAACATGTCTGATTGTTATGATGTTTGATACTGAAGGGATCTGAGTGG GACTTTGGCGTGTTTTCTGGTCTTGAAGGCGTTGAGAAGCCAAACCCAAAAATTTATGAGATTGCACTTGAGAGGGCTGG AAATATTAAACCTGAAGAAACTTTGCATATTGGCGATAGCATGCGGAAAGACTATGAGCCAGCTAAGAGCATAGGGATGC ATGCACTATTGTTGGACAGATTCAAGACACCAGATGCTGATGAGTGGAGGAAATCTGGGGCAGTTGTTCTTCCCGATTTG GAGGCAACACAAGAATGGCTTTCTTCAGAAAAGTCATCTTGGTAG
CDS sequence (LotjaGi6g1v0244600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAATATTGGCTAGACTGCGCTGTGTCACTGTAGATGTTACCGGCACCCTAATGGCTTACAAAGGGGAGCTTGGTGA CTATTATTGCATGGCCGCTAAAGCTGCTGGCCATCCGTGCCCAGACTACAAACGTGTACATGAGGGATTTAAGCTTGCAT ATAAGGACATGGCAAAGAAGTATCCCTGTTTCGGGTTTGGAGCCAAAATGCCGAACATTGTGTGGTGGAAAACCTGCGTG CGTGATTCTTTTGTCAGGGCTGGATATGAATATGATGAGGAAACATTTGAGAAAATTTTCAGACGCATATATGCATCTTT TGGGTCATCTGCTCCTTATACTGTCTTTCCGGACTCCCGACCATTTCTTAGATGGCTTCGTGGAAAGGGTGTCAAAGTTG GCCTCGTGAGCAATGCAGAGTATCGATATCCAGATGTGATTCTTCCAGCTATGGGTATAAATGAGGGATCTGAGTGGGAC TTTGGCGTGTTTTCTGGTCTTGAAGGCGTTGAGAAGCCAAACCCAAAAATTTATGAGATTGCACTTGAGAGGGCTGGAAA TATTAAACCTGAAGAAACTTTGCATATTGGCGATAGCATGCGGAAAGACTATGAGCCAGCTAAGAGCATAGGGATGCATG CACTATTGTTGGACAGATTCAAGACACCAGATGCTGATGAGTGGAGGAAATCTGGGGCAGTTGTTCTTCCCGATTTGGAG GCAACACAAGAATGGCTTTCTTCAGAAAAGTCATCTTGGTAG
Protein sequence (LotjaGi6g1v0244600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSILARLRCVTVDVTGTLMAYKGELGDYYCMAAKAAGHPCPDYKRVHEGFKLAYKDMAKKYPCFGFGAKMPNIVWWKTCV RDSFVRAGYEYDEETFEKIFRRIYASFGSSAPYTVFPDSRPFLRWLRGKGVKVGLVSNAEYRYPDVILPAMGINEGSEWD FGVFSGLEGVEKPNPKIYEIALERAGNIKPEETLHIGDSMRKDYEPAKSIGMHALLLDRFKTPDADEWRKSGAVVLPDLE ATQEWLSSEKSSW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 250 | 250 | 5.1E-146 | – | |
| PANTHER | 1 | 250 | 250 | 5.1E-146 | – | |
| PRINTS | 7 | 18 | 12 | 4.1E-7 | ||
| Gene3D | 8 | 221 | 214 | 1.0E-51 | ||
| TIGRFAM | 8 | 216 | 209 | 7.3E-63 | ||
| SUPERFAMILY | 8 | 243 | 236 | 1.36E-34 | ||
| Pfam | 8 | 210 | 203 | 1.8E-16 | – | |
| Gene3D | 23 | 108 | 86 | 1.0E-51 | – | |
| CDD | 119 | 223 | 105 | 1.10535E-37 | – | |
| PRINTS | 126 | 139 | 14 | 4.1E-7 | ||
| TIGRFAM | 128 | 211 | 84 | 2.2E-8 | ||
| PRINTS | 159 | 175 | 17 | 4.1E-7 | ||
| PRINTS | 206 | 219 | 14 | 4.1E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi6g1v0244600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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