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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0244800 |
| Transcript ID | LotjaGi6g1v0244800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G20090.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090; TrEMBL-Plants: tr|V7AZX0|V7AZX0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0244800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55735779..55738604) extracted from Lotus japonicus Gifu genome v1.2.
TTCCAAGATGATGGTTACCTTTCGGTAACCTTTCAATTGCTCCACTCGACTAGGACTAGCTGTTAGATGAGATGAACCTC ACTTGAATCATCTCAGCTCACCAACACAGTGTTCACTTAATTATGAAACATTTGGGTCGTCTACAACAATACATTATTTT CTCAGAACAACAACCGAACTCGGTGGTAGCCATAACCTCAACCTCAACCTCAACCTCAACGAAACCCCACTTCACTCCAT GTCATGTCATGCCATGCCAAAGTGCTTCTCAAGCACTCACTGCGTTCACCTCTCCTCCATCTTCATCTGGGTGTTGTCTC CCAAACCCCAACACTTCCCTCTTACTCTTCCTCTTCCTCCTCCAACCAACCACCTCCTCCAGTTTCAGCTGAAATCTTCA AATCAGGTTCCCACAAATGGGGTTCTTACAAGTTGGGAGATTTATCATTCTATTCCCTCATTGAAAAACTCGCAGCTTCC TCTGATTTCGCTTCATTGGAAGAGCTTCTGCAGCAGATGAAGCGTGAGAGGAGAGTTTTCATTGAGAAGAATTTCATTGT TATCTTCAAAGCTTATGGGAAAGCCCATTTCCCTGAAAAGGCTGTGAACTTGTTTCATAGAATGGAGGCTGAGTTTCATT GTAAGCAAACTGTGAAATCGTTTAATTCTGTTCTCAATGTGATTATTCAAGAGGGTCATTTTCATCGTGCATTGGAGTTT TACTCTCATGTGTGCAAGAGTTTGAACATTCAACCAAATGGACTTACATTTAACTTGGTGATTAAGGCCTTGTGTAAGGT TGGTTTGGTTGATCAAGCTGTTGAAGTTTTCAGAGGGATTCATTTGAGGAATTGTGCTCCTGATAGTTATACATATTCTA CTTTGATGGATGGGTTGTGCAAGGAGGGGAGGATTGATGAGGCGGTTTCGTTGTTGGATGAGATGCAGATTGAAGGAACG TTCCCGAACCCTTTTGTGTTTAATGTGTTGATCAGTGCATTGTGCAAAAAGGGTGACTTGGTACGTGCAGCCAAGCTGGT TGATAATATGTCTCTGAAGGGTTGTGTCCCCAATGAGGTGACTTACAATACACTTGTCGATGGGCTTTGTCGGAAGGGTA AGTTGAACAAGGCGGTGAGTCTCTTGAATCAAATGGTGGCGAATAAATGCGTGCCTAATGATGTTACTTTCGGGACGCTT GTTCATGGGTTTGTTAAGCAAGGTAGAGCTTCTGATGGGGCTTCTGTGTTGATCTCATTGGAAGAGAGGGGTCACCGTGG GAATGAGTATATTTACTCATCTCTTATAAGTGGCCTGTTTAAGGAAGGAAAATTTGAGCATGCAATGCAGTTGTGGAAGG AAATGATGGAAAAAGGATGCGAGCCAAATACTGTAGTGTATAGTGCTCTTATAGATGGTCTTTGCCGAGAAGGGAAGGCA GATGAAGCTAGGGAGTACCTAATTGAGATGAAGAATAAAGGTCACCTCCCGAATTCTTTCACTTATAGCTCCTTAATGAG GGGTTTTTTTGAAGCAGGGGATTGTCATAAAGCTATTCTTGTTTGGAAAGAGATGAAAAATAATAGCTGCAATCATAATG AGGTTTGTTACAGTATACTCATTAATGGATTGTGCAAGAATGGGAAGCTTATGGAGGCTATGATGGTGTGGAAGCAAATG CTGAGTAGAGGAATAAAATTAGATGTTGTGGCTTACAGTTCAATGATTCATGGCTTTTGTAATGCTCAACTAGTAGATCA AGGGATGAAACTTTTCAATCAGATGCTCTGTCAAGAGGCGGAGTTACAACCAGATGTGGCTACATATAACATACTTTTAA ATGCTTTTTACCAGCAGAATAACATCTCCCGCGCTATGGATGTTCTAAATATCATGCTAGATCAAGGATGTGATCCTGAT TTTATTACTTGTGATATTTTCTTGAAAACTTTAAGAGACAATATGAACCCACCTCAAGATGGGAGGGAGTTTCTTGATGA GCTTGTAGTCCGGTTAGTTAAGCGACAGAGAACAATAGGTGCTTCCAAAATTATAGAAGTGATGCTAGATAGGTGTTTGT TGCCGGAAGCTTCTACATGGGCCATAGTTGTTCAACAGCTCTGCAAACCTAGAAACATTAGAAAAGCCATTAGTGAGTGC TGGAGTAGGCTGTGTTGCTAATATCTTGTAAGATGTGTTATGCTACTGCAGTTTCCTTGGGCCATAGTTGTTGGTGTAGG CTCTGTTGCTAATATACTGGGATTTCTGGATGAAGGTCCTCAAACACAAGGGCCTCTAACTTTATATGCACAGATACAGT GATAAAAATCAGATGGAATCTACATTCATCAGATGAAAGTCAATGGTGATGGACTTGTGAACCAGATTACTGCATAATAC CAACAGATAGAAGTGCAATTTTCTTTTGTGAGCACGTACAGAGTTCATAGGTTGCTTTGTTCTAATTGCCAAGGAAAAGA ATGCAAGGTTCATATTCTGATTACACTAGTCTCTCAGAGACTCAGACCCATCATTATCTGTCCATTCCATTGGTCCGGGA TCCTAGGTCTGTAAAAATATTGAAGTTACCAACTATACTCTAACCATCAGAGTTGAAGGTACAGATTGAATGGAAAAATT GTGGGGCTGATCGATGAAACCAATTGCTAAAGCCTAAAGTGTCCGCAATTGTTGTCAGAAAAACAGAACTTTTGTTTGAT ACTTCATTCTTGATTTTAAAACTTAAATCTGTTAGTAGATTATAACTTTTATTTTTTGTATAGATAACAATTTACTCTGT CAATGACATGCCCCATTGGCTATGTT
CDS sequence (LotjaGi6g1v0244800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATGCCATGCCAAAGTGCTTCTCAAGCACTCACTGCGTTCACCTCTCCTCCATCTTCATCTGGGTGTTGTCTCCCA AACCCCAACACTTCCCTCTTACTCTTCCTCTTCCTCCTCCAACCAACCACCTCCTCCAGTTTCAGCTGAAATCTTCAAAT CAGGTTCCCACAAATGGGGTTCTTACAAGTTGGGAGATTTATCATTCTATTCCCTCATTGAAAAACTCGCAGCTTCCTCT GATTTCGCTTCATTGGAAGAGCTTCTGCAGCAGATGAAGCGTGAGAGGAGAGTTTTCATTGAGAAGAATTTCATTGTTAT CTTCAAAGCTTATGGGAAAGCCCATTTCCCTGAAAAGGCTGTGAACTTGTTTCATAGAATGGAGGCTGAGTTTCATTGTA AGCAAACTGTGAAATCGTTTAATTCTGTTCTCAATGTGATTATTCAAGAGGGTCATTTTCATCGTGCATTGGAGTTTTAC TCTCATGTGTGCAAGAGTTTGAACATTCAACCAAATGGACTTACATTTAACTTGGTGATTAAGGCCTTGTGTAAGGTTGG TTTGGTTGATCAAGCTGTTGAAGTTTTCAGAGGGATTCATTTGAGGAATTGTGCTCCTGATAGTTATACATATTCTACTT TGATGGATGGGTTGTGCAAGGAGGGGAGGATTGATGAGGCGGTTTCGTTGTTGGATGAGATGCAGATTGAAGGAACGTTC CCGAACCCTTTTGTGTTTAATGTGTTGATCAGTGCATTGTGCAAAAAGGGTGACTTGGTACGTGCAGCCAAGCTGGTTGA TAATATGTCTCTGAAGGGTTGTGTCCCCAATGAGGTGACTTACAATACACTTGTCGATGGGCTTTGTCGGAAGGGTAAGT TGAACAAGGCGGTGAGTCTCTTGAATCAAATGGTGGCGAATAAATGCGTGCCTAATGATGTTACTTTCGGGACGCTTGTT CATGGGTTTGTTAAGCAAGGTAGAGCTTCTGATGGGGCTTCTGTGTTGATCTCATTGGAAGAGAGGGGTCACCGTGGGAA TGAGTATATTTACTCATCTCTTATAAGTGGCCTGTTTAAGGAAGGAAAATTTGAGCATGCAATGCAGTTGTGGAAGGAAA TGATGGAAAAAGGATGCGAGCCAAATACTGTAGTGTATAGTGCTCTTATAGATGGTCTTTGCCGAGAAGGGAAGGCAGAT GAAGCTAGGGAGTACCTAATTGAGATGAAGAATAAAGGTCACCTCCCGAATTCTTTCACTTATAGCTCCTTAATGAGGGG TTTTTTTGAAGCAGGGGATTGTCATAAAGCTATTCTTGTTTGGAAAGAGATGAAAAATAATAGCTGCAATCATAATGAGG TTTGTTACAGTATACTCATTAATGGATTGTGCAAGAATGGGAAGCTTATGGAGGCTATGATGGTGTGGAAGCAAATGCTG AGTAGAGGAATAAAATTAGATGTTGTGGCTTACAGTTCAATGATTCATGGCTTTTGTAATGCTCAACTAGTAGATCAAGG GATGAAACTTTTCAATCAGATGCTCTGTCAAGAGGCGGAGTTACAACCAGATGTGGCTACATATAACATACTTTTAAATG CTTTTTACCAGCAGAATAACATCTCCCGCGCTATGGATGTTCTAAATATCATGCTAGATCAAGGATGTGATCCTGATTTT ATTACTTGTGATATTTTCTTGAAAACTTTAAGAGACAATATGAACCCACCTCAAGATGGGAGGGAGTTTCTTGATGAGCT TGTAGTCCGGTTAGTTAAGCGACAGAGAACAATAGGTGCTTCCAAAATTATAGAAGTGATGCTAGATAGGTGTTTGTTGC CGGAAGCTTCTACATGGGCCATAGTTGTTCAACAGCTCTGCAAACCTAGAAACATTAGAAAAGCCATTAGTGAGTGCTGG AGTAGGCTGTGTTGCTAA
Protein sequence (LotjaGi6g1v0244800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSCHAKVLLKHSLRSPLLHLHLGVVSQTPTLPSYSSSSSSNQPPPPVSAEIFKSGSHKWGSYKLGDLSFYSLIEKLAASS DFASLEELLQQMKRERRVFIEKNFIVIFKAYGKAHFPEKAVNLFHRMEAEFHCKQTVKSFNSVLNVIIQEGHFHRALEFY SHVCKSLNIQPNGLTFNLVIKALCKVGLVDQAVEVFRGIHLRNCAPDSYTYSTLMDGLCKEGRIDEAVSLLDEMQIEGTF PNPFVFNVLISALCKKGDLVRAAKLVDNMSLKGCVPNEVTYNTLVDGLCRKGKLNKAVSLLNQMVANKCVPNDVTFGTLV HGFVKQGRASDGASVLISLEERGHRGNEYIYSSLISGLFKEGKFEHAMQLWKEMMEKGCEPNTVVYSALIDGLCREGKAD EAREYLIEMKNKGHLPNSFTYSSLMRGFFEAGDCHKAILVWKEMKNNSCNHNEVCYSILINGLCKNGKLMEAMMVWKQML SRGIKLDVVAYSSMIHGFCNAQLVDQGMKLFNQMLCQEAELQPDVATYNILLNAFYQQNNISRAMDVLNIMLDQGCDPDF ITCDIFLKTLRDNMNPPQDGREFLDELVVRLVKRQRTIGASKIIEVMLDRCLLPEASTWAIVVQQLCKPRNIRKAISECW SRLCC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 50 | 199 | 150 | 6.1E-19 | ||
| ProSiteProfiles | 65 | 99 | 35 | 5.777 | ||
| PANTHER | 69 | 281 | 213 | 5.1E-132 | – | |
| PANTHER | 69 | 281 | 213 | 5.1E-132 | – | |
| Coils | 75 | 102 | 28 | - | – | |
| ProSiteProfiles | 100 | 130 | 31 | 6.116 | ||
| Pfam | 107 | 128 | 22 | 0.096 | ||
| ProSiteProfiles | 136 | 171 | 36 | 7.794 | ||
| Pfam | 168 | 197 | 30 | 9.7E-8 | ||
| ProSiteProfiles | 172 | 206 | 35 | 10.753 | ||
| TIGRFAM | 175 | 208 | 34 | 7.2E-7 | ||
| Pfam | 202 | 235 | 34 | 1.1E-14 | ||
| ProSiteProfiles | 207 | 241 | 35 | 13.767 | ||
| TIGRFAM | 209 | 242 | 34 | 1.4E-10 | ||
| Gene3D | 220 | 335 | 116 | 3.9E-33 | ||
| Pfam | 238 | 270 | 33 | 1.5E-8 | ||
| ProSiteProfiles | 242 | 276 | 35 | 11.86 | ||
| TIGRFAM | 245 | 278 | 34 | 5.6E-8 | ||
| PANTHER | 275 | 390 | 116 | 5.1E-132 | – | |
| PANTHER | 275 | 390 | 116 | 5.1E-132 | – | |
| Pfam | 276 | 325 | 50 | 3.0E-16 | ||
| ProSiteProfiles | 277 | 311 | 35 | 13.351 | ||
| TIGRFAM | 279 | 312 | 34 | 1.3E-11 | ||
| ProSiteProfiles | 312 | 346 | 35 | 8.528 | ||
| PANTHER | 334 | 450 | 117 | 5.1E-132 | – | |
| PANTHER | 334 | 450 | 117 | 5.1E-132 | – | |
| Gene3D | 336 | 448 | 113 | 1.8E-32 | ||
| Pfam | 347 | 395 | 49 | 7.4E-16 | ||
| ProSiteProfiles | 347 | 381 | 35 | 13.954 | ||
| SUPERFAMILY | 349 | 558 | 210 | 1.1E-9 | – | |
| TIGRFAM | 349 | 383 | 35 | 1.9E-12 | ||
| PANTHER | 381 | 515 | 135 | 5.1E-132 | – | |
| PANTHER | 381 | 515 | 135 | 5.1E-132 | – | |
| ProSiteProfiles | 382 | 416 | 35 | 13.033 | ||
| TIGRFAM | 384 | 417 | 34 | 1.7E-8 | ||
| Pfam | 412 | 445 | 34 | 1.6E-6 | ||
| ProSiteProfiles | 417 | 451 | 35 | 10.293 | ||
| TIGRFAM | 419 | 452 | 34 | 3.9E-7 | ||
| PANTHER | 431 | 567 | 137 | 5.1E-132 | – | |
| PANTHER | 431 | 567 | 137 | 5.1E-132 | – | |
| Gene3D | 449 | 515 | 67 | 1.8E-18 | ||
| ProSiteProfiles | 452 | 486 | 35 | 12.627 | ||
| Pfam | 452 | 500 | 49 | 1.1E-14 | ||
| TIGRFAM | 454 | 488 | 35 | 1.4E-10 | ||
| ProSiteProfiles | 487 | 521 | 35 | 10.216 | ||
| TIGRFAM | 489 | 517 | 29 | 1.7E-5 | ||
| PANTHER | 505 | 636 | 132 | 5.1E-132 | – | |
| PANTHER | 505 | 636 | 132 | 5.1E-132 | – | |
| Gene3D | 518 | 644 | 127 | 3.9E-15 | ||
| Pfam | 523 | 570 | 48 | 7.3E-11 | ||
| ProSiteProfiles | 524 | 558 | 35 | 11.422 | ||
| TIGRFAM | 527 | 559 | 33 | 1.1E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0244800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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