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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0251900 |
| Transcript ID | LotjaGi6g1v0251900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT3G16720.1 TOXICOS EN LEVADURA 2; Swiss-Prot: sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2; TrEMBL-Plants: tr|A0A072V5V7|A0A072V5V7_MEDTR RING-H2 zinc finger protein; Found in the gene: LotjaGi6g1v0251900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56408776..56410666) extracted from Lotus japonicus Gifu genome v1.2.
CGTAACCGCGTCAAGAATGTCGATTGTTTCACATTCGACAACAACAAAAATCTAAATATAAAGCATTTTCTTAGCATAGT ATAAACCTCATCCCCATCTCACTTTCATGCTCAAGTGTCAACCCGTCAACTATCAAAGACTCAAGAACCTTCCTCACTCT TTCTTCTCCAATCTCCACCTTCTCCTTCTTCTTCTTCTTTCTCTCTATCTTCATCTATAAACCTAAGCGTTTCTTCTTCT TCTTCTTCTTCTTCTTCTTATTATTATCTCTAACTCACTCACTCACTCTTTGAAATGGAAAACCATGAAGCCAAACACGA GTTCAAGGAGGTGGACCCCATGCCAAACGTCTTCGACGCCAAAGGCTACAGCCTCAGCGGCAAGATCATGCTCTCTTGCA TCATCCTTCTCTTCTTCATCGTCGTCTTAATGGTCTGCCTCCACATTTACGCCCGCTGGTACCTCCTCCGCGCTCGCCGC CGCCACCACCACCACCACAACCTCCGCCGCCGTCAAGCCCAGCTCGTGTTCTACCCTGACCCCACCAACCCCACCACTCT TCAACAAGACATCTACCCCGGCATCTACGCCGCCGCCGTATCCTTCATCGCCGCCGCCCCACGTGGCCTGGAAGCTTCCG TCATCACCTTGCTCCCTGTCTTCTCCTACGACCCCAAGGCCCACCCGGAAGGACCTCCGGAATGTGCCGTTTGCTTGTCG GAGTTTGAATCGGGTGAAACGGGTCGGGTTTTGCCCAAATGCAAGCACGCTTTCCACACCGATTGTATTGACATGTGGTT CCACTCTCACTCCACCTGCCCCCTCTGCCGCACCCTGGTGGAGCCTGAACCCGAAAACCAGACCCAGACCCGGCCTGAAT TGGTTCTGGTGGACGTACCGGAACACGGGTCGAGTTCCGGGTCGGGTTTGGAGACTGAGAATCGGACCGGCCCAGAAGTT TCTTCGTCGTCGGTTGGGTCGAGGAGGAAGCCGCCGTTAATCGGCGTGACAGTTGAGGTGCCGCCGAGGAGCGAGAGTTT CAACGTTGACGGCGACTCGCCGTCGTCTCAGTCGTCGTTCCGGTCGCCGATGAGTCGGATGCTTTCGTTGAAGAGAATTC TCAGCAGGGAGTGGAAGGGGAGCGTGTCCCCGTCGTCTAGTGGTGGTGGTGGTTGCAGCTCTGTCTCTGCGGTGGAGTGC ATCGACGTGGAGCGAGGTGAACGGGAGGAGACTCAGTGAGTTGGCGCCGACTCGGAGTGAGTTGAGAGTGATGACGTGGC AAATTGGGGACATGAAACGTGTTGGAAGTGATGAGGACATGACATGATGTTCGTGGCGGTGACTATGGATATTGTTTTTT TTTTTAGCGGCGCTAGAAAGAGTCAAAGAGAGTGTGTATGTAGTGACTAGTGAGTAAAGAACACAGGAAAAACTTGTTGA TATTTTTCTTTTTCTATTAGTATTTTGTTAGTTTCAAAACTAGTAGTTAAGAATTAAATATTAAAATACAATACAATACA AAATTGCCTTGTCTGTCATTGTTAATATTCTTGTGAACAATCCAGATGAGGCCATTACTGATAAGTCTCTTTGTGTTCTT GTGTACTCTCTCCTGTCCTATTTATAAGTAACAAAAGAAAAATTCACATAGTTTAAGAAATGTAGTTAAACTACATAAAA TGTATTAAATTTGTTTTAAATCAAAATAAACTTCCAAAATTACCCTTTGTTATTAGTGTTGAAAAGTGGGAAAGAAAGAG AATAAATAATGAGACACATTTTACAAGTTAGAATTAATAAGGGCATCATTGGAAAAAATTAATTAATATAACTCAAATTT TCATTTGGTTCTTATAAAAAAGACTAAGATTTTTCTTCTCTTTCATGCTTA
CDS sequence (LotjaGi6g1v0251900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAACCATGAAGCCAAACACGAGTTCAAGGAGGTGGACCCCATGCCAAACGTCTTCGACGCCAAAGGCTACAGCCT CAGCGGCAAGATCATGCTCTCTTGCATCATCCTTCTCTTCTTCATCGTCGTCTTAATGGTCTGCCTCCACATTTACGCCC GCTGGTACCTCCTCCGCGCTCGCCGCCGCCACCACCACCACCACAACCTCCGCCGCCGTCAAGCCCAGCTCGTGTTCTAC CCTGACCCCACCAACCCCACCACTCTTCAACAAGACATCTACCCCGGCATCTACGCCGCCGCCGTATCCTTCATCGCCGC CGCCCCACGTGGCCTGGAAGCTTCCGTCATCACCTTGCTCCCTGTCTTCTCCTACGACCCCAAGGCCCACCCGGAAGGAC CTCCGGAATGTGCCGTTTGCTTGTCGGAGTTTGAATCGGGTGAAACGGGTCGGGTTTTGCCCAAATGCAAGCACGCTTTC CACACCGATTGTATTGACATGTGGTTCCACTCTCACTCCACCTGCCCCCTCTGCCGCACCCTGGTGGAGCCTGAACCCGA AAACCAGACCCAGACCCGGCCTGAATTGGTTCTGGTGGACGTACCGGAACACGGGTCGAGTTCCGGGTCGGGTTTGGAGA CTGAGAATCGGACCGGCCCAGAAGTTTCTTCGTCGTCGGTTGGGTCGAGGAGGAAGCCGCCGTTAATCGGCGTGACAGTT GAGGTGCCGCCGAGGAGCGAGAGTTTCAACGTTGACGGCGACTCGCCGTCGTCTCAGTCGTCGTTCCGGTCGCCGATGAG TCGGATGCTTTCGTTGAAGAGAATTCTCAGCAGGGAGTGGAAGGGGAGCGTGTCCCCGTCGTCTAGTGGTGGTGGTGGTT GCAGCTCTGTCTCTGCGGTGGAGTGCATCGACGTGGAGCGAGGTGAACGGGAGGAGACTCAGTGA
Protein sequence (LotjaGi6g1v0251900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENHEAKHEFKEVDPMPNVFDAKGYSLSGKIMLSCIILLFFIVVLMVCLHIYARWYLLRARRRHHHHHNLRRRQAQLVFY PDPTNPTTLQQDIYPGIYAAAVSFIAAAPRGLEASVITLLPVFSYDPKAHPEGPPECAVCLSEFESGETGRVLPKCKHAF HTDCIDMWFHSHSTCPLCRTLVEPEPENQTQTRPELVLVDVPEHGSSSGSGLETENRTGPEVSSSSVGSRRKPPLIGVTV EVPPRSESFNVDGDSPSSQSSFRSPMSRMLSLKRILSREWKGSVSPSSSGGGGCSSVSAVECIDVERGEREETQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| PANTHER | 24 | 244 | 221 | 1.1E-54 | – | |
| PANTHER | 24 | 244 | 221 | 1.1E-54 | – | |
| TMHMM | 31 | 53 | 23 | - | – | |
| Phobius | 31 | 53 | 23 | - | – | |
| Phobius | 54 | 314 | 261 | - | – | |
| Gene3D | 112 | 186 | 75 | 4.7E-22 | ||
| SUPERFAMILY | 136 | 189 | 54 | 2.27E-21 | – | |
| Pfam | 136 | 179 | 44 | 6.8E-13 | ||
| CDD | 136 | 179 | 44 | 1.87449E-18 | – | |
| ProSiteProfiles | 137 | 179 | 43 | 12.637 | ||
| SMART | 137 | 178 | 42 | 5.5E-7 | ||
| MobiDBLite | 186 | 266 | 81 | - | – | |
| MobiDBLite | 207 | 230 | 24 | - | – | |
| MobiDBLite | 250 | 266 | 17 | - | – | |
| MobiDBLite | 279 | 314 | 36 | - | – | |
| MobiDBLite | 281 | 295 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0251900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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