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LotjaGi6g1v0252100.2

Overview

Field Value
Gene ID LotjaGi6g1v0252100
Transcript ID LotjaGi6g1v0252100.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Acyl-CoA dehydrogenase-related family protein; TAIR: AT3G06810.1 acyl-CoA dehydrogenase-like protein; Swiss-Prot: sp|Q8RWZ3|IBR3_ARATH Probable acyl-CoA dehydrogenase IBR3; TrEMBL-Plants: tr|A0A1J7FV79|A0A1J7FV79_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0252100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:56424768..56431818) extracted from Lotus japonicus Gifu genome v1.2.

TTACGTAGATCGAATTCAGATATGGCGAAGAATCCATCTGACCCAGCTACTCACCATTTCAACCACGACTCTCTGCTCCG CTTCTGCTCTTCCAACATTTCCGGCTTCCCACCTTCCCCCACACATTTCAACCTCTCCCAGGTTCCATTTTTTACTGATT CTACGTTTTTGTGTTTCTGGGTCATCTGGGTTTGCATCAAAATTTGATATTTATTCATATATTAATTGATTGAATTTTGC ACTTCTTTATTTGACTGTTATGGTTCTGTGGTTATTTTTGTTTGTTCTAGTTTGGACATGGACAGTCCAACCCCACCTAC TTGATGGAAGTAGGCTCACACGGCTCTGTGGTCAAGCGCTACGTTCTCAGGAAGAAACCTGCAGGGGTGTTACTGGCTTC AGCTCATGCTGTGGAAAGAGAGTTTATGGTTTGTCTATTTATTTTTGGATCAATATTGAACTCTGGTTTCTTTTGAAGGG TTGAAAAAGTTGATGGTGTGTAAAGTTTTTGCAAGGGAATGTGTTTTTTATTCCTCTATTTTGGTTTTGGTCCTCCAACT CATAGGTTCTCCAGGCGTTGGGAGCTAACACGAAAGTTCCGGTTCCTAAAGTTTTCTGTTTGTGCAATGATCCATCTGTT ATTGGAACAGCTTTTTACATTATGGAGTATTTGGAGGGGCGCATATTTGTTGATCCCAAGCTACCAGTATGATTTGTTTA CTAGTTATCTTCATTTTTCTCAACTAAATTTAGTGATGATTGCTGAATTATCATCGGTTTGGCGTTTGAAATATGTTGTA TGTTAATGTGTCAGGGTATGGCACCAGAGAGGAGGAGGGCGATTTACCTGGAAACTGCGAAAGCCTTAGCTTCTTTACAT TCTGCTAATGTGGACTCCATTGGTCTGGGAAAATATGGGCGTCGTAATGATTATTGCAAAAGACAAGTGAGTTGTTTTAG ATTATTTGCAGTCAAATTGCTTGCTTGTTTATGGTGAAGGTTGTGCCTTGAATTTTCTTTTCTTTTCAAAGAGATATATT GTATGGCGATAGAAAGGAGTGCCTTTTGACTGTGTGACAAACCTTCTGTGATGAGAGTGACCTGGGATGCATAATGGATT GAGCTGGATTACAGTACAATAGAAGTTACTAAAGCAATTTTTGTGATGATCTTGAAAATACTGATCCCTCCATTTGGTTC TTAAAAGAGTTGGAGCCCAACCTCCATGAGCTTTCCCAGGATGAATCCTGGTTTGGGGGCACTTATCCCTTTCCCAATGC CTATTTTTAAGCTCAACTCCCCTATGTCCTACCCCCACCCTTGCTATGCACCATGCTATAAGGGTTTGGATCAAATTACT TTTATTTTACCAAATACCAACTCAATACCACTGATGGAGTTTTTATTTAGATTGAGAGGTGGGCTAAGCAATATATTGCC TCAACCAGTGAGGGTAAACCTGCAACGAATCCAAAAATGTTTGCCCTGGTTGATTGGCTAAAGCTCAACATCCCTCTTGA AGATTCTTCAGGAGCAACAGCTGGTCTGGTTCATGGAGATTTTCGTCTTGACAATCTTGTGTTCCATCTCACAGAGGTAA GATGCATTTAGTAAGAGTATACAATTTTCTAAAGTTCCATTGGATGAAAAATATCATTTTTCTTTGTCCTGTATTAATGC AGATTTTCCTATTTGATCATGGTTAAAATTAGAGTGTCATAACATTTTGCTAAAAGAAACAAATTTATGTTGTCATATGT AGATTACCCTGGAATCTGGACAGTGTCAATATTGGCATTTAGGATTTATAACAATCCGTGGCATCTTAGAACCCATGTAT TATGCCTGATAAGTTTTTTAACTTTTCTTTCTGCTGCAGGATCGAGTAATTGGGGTACTTGACTGGGAACTGTCTACCCT TGGTAACCAAATGTGCGATGTCGCATATAGCTGTCTGGTATGTACTATATAGTCCTATTTAATGAATCAAATTTTTTGTG ATAATGATGTATTTTGTCTGCACAAACTTGTCTTTTTTGTTTATGTGCTCTTGATGGTTATTATTTTCAGTTATTCTGGA ATACCAGTGCAATTCATGGATTTTTTTCTTCTTCTTTGGCAGTCTTATATTGCAGATATTGGGCCAGAAATAGTACGGGA AGGTATGGAACTATCTGGGGCACCAAAGGGAATTCCTTCACTACCAGAATATTTGGCTGAGTACTGCTCTCTGGCAGTAA GTGTTTAGTGCTGTAACTAAATATGCTCAATTTGGAATCAGGAAGAGAAAGAACTTATCAGAGTAACAGACTAGAGTTCT GTGTGACAGTAGTTATCTCTATTACCTTGATCAGATTTATATACAAGAGGGTAGATCATAACTGAATTTACCGAAATAAA ACTAAATAACTAATTTGTGGTTTGTTACAATCTGTTAGCCTAATAGGCTAATAATAAATATGCTGAGTCCGACCATGAAA GATCATTTAGAAGGGTAAAGATCAGGCGTGCCTCACCTTTAATGTGTGTTGGTAAAGATAAGTCAAGACCCACTCTTGAG CCACGACTAACACACAGGCTAGCATATCAACCTATTCCTCAGCTAGCCTGGCAAATCTAAGGGGAGAACCACACATGGGA TACACACCTCTGAATCAGGGAGCTTCCATATATTCAGCTGAGTTTCTACTTCAGTGCATCTAGGATAAGGATAGAGCTTA GTGGCCTCTGTTTGTGACGAATAATGTGTTAACCTACACTTCATGAAAAACCTATCAAAGGCCCACAAACCCAATGCTTA TTTATGACAGAAGAATAACAAAAGTAATTACAAATGGTTTATACCTCTATATACTTCTCAATATTTGACATTCAAATTTT AAGAATATATGGCGAGGATTATACCTAGGTTTAAAAAATTCAACAGCATGTTCTGTCATAACTTGAAGAGTTGGATCCTT TGTTGGAAATGTTATGAACTTTTTATAATTTTGTAGTTGATGCTATTGGTCATGAACATTTGCTAGGGATGTTTTTGCCA TATGGCTGACATTTGTATGATATACTGATCCACTGTGCTAATTTGTTGCTAAAATTTGCAATTTATGTACACCTTCTAGC CTCTAGAAGTAATCAAACTTAAATGGTGATTGATTTATATATCTATATCCAATCTAAATAATTCTAACAGAGAAGTTTTT GATACCAGGAACGAAAATGGCCTCTTGCTGAATGGAAGTTCTATGTTGCCTTTTCTTTGTTCCGTGGGGCTTCAATTTAT GCAGGCGTGTATAATAGATGGGTTAAGGTATCTAAACTTTTTAAAGATGCTGTTGTCTTTTGAGTTTAAGATTTATTTAT GTGTGGCTTCTGTGTGCAATCTAGGGTAATGCATCAGGAGGTGAGCGTGCGCGTCATACAGAAGTACTTGCTAATGGTCT TATAGATGCTGCTTGGAAATTTATTGAACGCAAATCTGTGCTTCCACAGCATCCTCCCTCAGGTAGCTCTACCATTTTAA ATGTTATGGGCTCCTGCATATACTACCTAACTTACTTTCCTGGAAGCTAAGGTATTTCTGCTCTTAACAAATCAGATGCA AACGCACGTGACCATTCAAAAGAGTTAGTGAATGGGGATGATATGCTGGGGCTATCAAATCAGGGGAAGTTTGTTCCTAG CCAAAAGGTTTTAAACCTCAGGAACAAATTAATTCAGTTTATGGAGGAACACATATACCCCATGGAAAATGAGTTTTATA AACTCGCCCAGTCAGAATCACGTTGGACCGTTCACCCTGCAGAGGAAAAGTTAAAGGAGTTAGCAAAGAAAGAAGGCTTG TGGAACTTATTTATTCCTGTATGCATCTTAATTTTTCTCCTCTGTAATATATTTTATCTGTACTTTGTGATTTTAGAAGC TTTTATCATCCTTCCATCAGGTTTTGATATATTACAGCTTCCTCGAAATCTTCAACAATAGGAATGAACTTATTTGTTAT AGACCTATACAAGGGTTTCCACTATTTTCTTGCCCTTTCCTCCCTCTCAAGTTAAAGCTAGCTAAACTTTAACTAAATGC AGTAAAGATTGCCGGATTACTTTGGAGTCGGGCAGACGGGTTAAAAAACAGAATATAGAAGTATGTGCAAGTTTATAATA TATAAAAATCTTGAAAGACAAGAAGGAAGAGGATTGTTTGAATAGAACTGATCTTTGTCATGTTATTTTAGGATTATATT TTTGTTACCTTCAATGTTACTATGTTTCTGAGATTAAGTTCCTGCGAATTTGTCTGTTTTTATGCAGCTTGACAGTGCTG CGAGGGCAAAAAATCTTATTTTTGATGGGAGCAATAATAGTCCCTCTACTGATGCAAATGACTTGTTATTGGGTGCTGGT CTAACAAATCTCGAATATGGATATCTTTGTGAGACCATGGGTCGCTCTGTTTGGGCTCCACAAGTATTTAACTGTGGTGC ACCTGATACAGGTAATATGGAGGTAAGATGAAACATATAGATTCTCTAGGCTAATCAATTACTGACTAAATTGGATTGTC CTGGATTGATCAGGTTTAGAACTTTGACTATCTGCGTTGCATTTTTTTGTGATATGGTTGTAACATTACTTTGCATATTA GGTATTACTGCGTTATGGAAATAAAGAGCAACAACGAGAATGGCTTATTCCTTTGCTTGAGGGGAAGATTAGGTCTGGAT TTGCAATGACAGAACCTCGTGTTGCGTCTTCTGATGCAACCAATATTGAGTGTTCGATCAAAAGGTTGGATTATCCATAA TCTTAAGCATTTCATGACTTCAGTCTTTCCATTTAGCTGATGTACATGTATTGAAATAATAATTAAAAAGATAGGTTTGA GTCAAGCTTGATAACAGACAATTGGACATTTATGAAGTTGTGGAATGCTTTTCTTAATTTTTCTCCTTACAGACAAGGAG ATTCATATATTATCAATGGGACAAAATGGTGGACAAGTGGTGCCATGGATCCAAGATGCAGAATTCTTATAGTCATGGTG AGTATTTGGTTGAAAGTTATTACATCAACCGTCAATGTGCTATTCACTTCAGTAGATATCGGAGAGTGATCAAAGCATGC GCGCAGGGTAAAACTGACTTCAATGCAGCGAAGCATAAACAGCAATCTATGATCTTAGTTGATATCCAGACTCCTGGTGT TCATATAAAGAGACCATTGTTGGTGTTTGGCTTTGATGATGCACCTCATGGGCATGCAGAAGTAACATTTGAGAATGTAC GTGTGCCAGCAGAAAATATCTTACTTGGTGAAGGACGTGGATTTGAGATTGCTCAAGTAAGTTGATAACTATTTCCTTTC TGTTGAATACTAGCTTGTGAATTATGATGTTGGTTTGAAGTAACCCTGTTATTCTTGAATTAATATATTGTATTGTACCG TTCGATTCTGTCAGTGCCGCAAACATCTAGCTAGCAGACTTCAGATATGAGACTTGTTGGAAGCATAAATTATCATTGAA ACGTGTCAAAATAATAGTATTAGTATATTCTACTAGAAGGAATTTTTTTTTTTCGAAAGGAGAAAATATATATAATAATA ATGAGGAAACTGATAAGATATACACCAAAACAACCTCAACACGGTATCAAAAACCCACACGACCAAGGCTGCCCACCAAA AAGAACAAAAAAAAACCAACCCAAAACAGCGGCAAATAAGAACAATAGCCTCAAAAACTAGAAGCCGCAATTGCAACAAC TACAAAAACCAAAAGTCGTTTGCAATACCCAAAAAACTCTCAAAGGACTAGGAAAAAACCTATACAGCCCATAACTCGCC ACCACCCCAAATCTCACCCTCAACGGCGCAGAGAAGCTTTCCGCGCCTTGATCTCATTGGCAATTTGAAAGAGAGGGATA TCATCAGGGCAATCATACCTCAAGCCTAAGCGCTTCCCCATCAAGACGGCACTCCTCGCTCTAGTCAATACGCCATAAGG CTCCGACATCTCCGTCGGCAACACCATCAGCTCTTTCCCTGTCTGCTCTGCATCAGTATAGCCTGCTTCCATTGTCATAG CACCACCAGAGCTCCCAGCAGCACCTTGCTTCTTTCTGCCTCCACCATCACCTTTCTTAGGTCTTCCCCTCGGGGTTTTC ACATGATCCCTGGGTACGGAAAACCCAGTATCATGAGAAACCCCCAGTTCAGAAGATATGGAAACCATATTAGATGTGAT GTACCATAGCTGCCTCTTGCTGTACTAGAAGGAATTTACTGGTTTATGCATATGACTTATTAGGGCTTTCTATTCACCTT ATATTGTTTGAGTTGCTAGCTGAAGTACCAAGAAGCATATTTTTCACCTGCTGTTACTTGCATTCTTGCAGGGTAGGCTA GGTCCTGGAAGGCTGCACCATTGTATGAGACTGATAGGTGCTGCTGAGAGAGGCATGCAAATGATGGCTCAAAGAGCTGT TAGCAGAAGAGTATTTGGGAAATTGATTGCTCAACAGGGCTCATTTCTTTCAGATATGGCCAAGGTATTAGGATTGAGCA AGCATATATCTTAAATCCGTAGGAGAAATAGAAATAGAAATCTCTTTCAATTTTACTTTATACAGGCTCTTTGCTAACAT AGCTATCTGTTGTTCAGTGCCGAATAGAGCTAGAGAAGACCAGATTGTTGGTGTTGGAAGCTGCGGACCAACTAGATAGA CATGGGAACAAGAAAGCTCGAGGGATATTAGCAATGGCGAAGGTAACTTTTTTTTTGGAACACAGCATATTGTCCTGATC TTCTGTTCCTATCATTTCACTCGTGATGTTGATCAATACTATCCTTGGTCTTGGAGCAGGTAGCCGCACCAAACATGGCA CTAAAAGTACTTGACATGGCAATGCAAGTGCATGGAGCTGCTGGTGTGTCTTCTGATACAGTTCTGGCGCATCTGTGGGC AACTGCAAGGACCCTAAGAATTGCAGACGGTCCAGATGAAGTCCACTTGGGTACCATTGCCAAGTTAGAACTACAGAGAG CCAAGCTCTGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0252100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGAAGAATCCATCTGACCCAGCTACTCACCATTTCAACCACGACTCTCTGCTCCGCTTCTGCTCTTCCAACATTTC CGGCTTCCCACCTTCCCCCACACATTTCAACCTCTCCCAGTTTGGACATGGACAGTCCAACCCCACCTACTTGATGGAAG TAGGCTCACACGGCTCTGTGGTCAAGCGCTACGTTCTCAGGAAGAAACCTGCAGGGGTGTTACTGGCTTCAGCTCATGCT GTGGAAAGAGAGTTTATGGTTCTCCAGGCGTTGGGAGCTAACACGAAAGTTCCGGTTCCTAAAGTTTTCTGTTTGTGCAA TGATCCATCTGTTATTGGAACAGCTTTTTACATTATGGAGTATTTGGAGGGGCGCATATTTGTTGATCCCAAGCTACCAG GTATGGCACCAGAGAGGAGGAGGGCGATTTACCTGGAAACTGCGAAAGCCTTAGCTTCTTTACATTCTGCTAATGTGGAC TCCATTGGTCTGGGAAAATATGGGCGTCGTAATGATTATTGCAAAAGACAAATTGAGAGGTGGGCTAAGCAATATATTGC CTCAACCAGTGAGGGTAAACCTGCAACGAATCCAAAAATGTTTGCCCTGGTTGATTGGCTAAAGCTCAACATCCCTCTTG AAGATTCTTCAGGAGCAACAGCTGGTCTGGTTCATGGAGATTTTCGTCTTGACAATCTTGTGTTCCATCTCACAGAGGAT CGAGTAATTGGGGTACTTGACTGGGAACTGTCTACCCTTGGTAACCAAATGTGCGATGTCGCATATAGCTGTCTGTCTTA TATTGCAGATATTGGGCCAGAAATAGTACGGGAAGGTATGGAACTATCTGGGGCACCAAAGGGAATTCCTTCACTACCAG AATATTTGGCTGAGTACTGCTCTCTGGCAGAACGAAAATGGCCTCTTGCTGAATGGAAGTTCTATGTTGCCTTTTCTTTG TTCCGTGGGGCTTCAATTTATGCAGGCGTGTATAATAGATGGGTTAAGCTTGACAGTGCTGCGAGGGCAAAAAATCTTAT TTTTGATGGGAGCAATAATAGTCCCTCTACTGATGCAAATGACTTGTTATTGGGTGCTGGTCTAACAAATCTCGAATATG GATATCTTTGTGAGACCATGGGTCGCTCTGTTTGGGCTCCACAAGTATTTAACTGTGGTGCACCTGATACAGGTAATATG GAGGTATTACTGCGTTATGGAAATAAAGAGCAACAACGAGAATGGCTTATTCCTTTGCTTGAGGGGAAGATTAGGTCTGG ATTTGCAATGACAGAACCTCGTGTTGCGTCTTCTGATGCAACCAATATTGAGTGTTCGATCAAAAGACAAGGAGATTCAT ATATTATCAATGGGACAAAATGGTGGACAAGTGGTGCCATGGATCCAAGATGCAGAATTCTTATAGTCATGGGTAAAACT GACTTCAATGCAGCGAAGCATAAACAGCAATCTATGATCTTAGTTGATATCCAGACTCCTGGTGTTCATATAAAGAGACC ATTGTTGGTGTTTGGCTTTGATGATGCACCTCATGGGCATGCAGAAGTAACATTTGAGAATGTACGTGTGCCAGCAGAAA ATATCTTACTTGGTGAAGGACGTGGATTTGAGATTGCTCAAGGTAGGCTAGGTCCTGGAAGGCTGCACCATTGTATGAGA CTGATAGGTGCTGCTGAGAGAGGCATGCAAATGATGGCTCAAAGAGCTGTTAGCAGAAGAGTATTTGGGAAATTGATTGC TCAACAGGGCTCATTTCTTTCAGATATGGCCAAGTGCCGAATAGAGCTAGAGAAGACCAGATTGTTGGTGTTGGAAGCTG CGGACCAACTAGATAGACATGGGAACAAGAAAGCTCGAGGGATATTAGCAATGGCGAAGGTAGCCGCACCAAACATGGCA CTAAAAGTACTTGACATGGCAATGCAAGTGCATGGAGCTGCTGGTGTGTCTTCTGATACAGTTCTGGCGCATCTGTGGGC AACTGCAAGGACCCTAAGAATTGCAGACGGTCCAGATGAAGTCCACTTGGGTACCATTGCCAAGTTAGAACTACAGAGAG CCAAGCTCTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0252100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAKNPSDPATHHFNHDSLLRFCSSNISGFPPSPTHFNLSQFGHGQSNPTYLMEVGSHGSVVKRYVLRKKPAGVLLASAHA VEREFMVLQALGANTKVPVPKVFCLCNDPSVIGTAFYIMEYLEGRIFVDPKLPGMAPERRRAIYLETAKALASLHSANVD SIGLGKYGRRNDYCKRQIERWAKQYIASTSEGKPATNPKMFALVDWLKLNIPLEDSSGATAGLVHGDFRLDNLVFHLTED RVIGVLDWELSTLGNQMCDVAYSCLSYIADIGPEIVREGMELSGAPKGIPSLPEYLAEYCSLAERKWPLAEWKFYVAFSL FRGASIYAGVYNRWVKLDSAARAKNLIFDGSNNSPSTDANDLLLGAGLTNLEYGYLCETMGRSVWAPQVFNCGAPDTGNM EVLLRYGNKEQQREWLIPLLEGKIRSGFAMTEPRVASSDATNIECSIKRQGDSYIINGTKWWTSGAMDPRCRILIVMGKT DFNAAKHKQQSMILVDIQTPGVHIKRPLLVFGFDDAPHGHAEVTFENVRVPAENILLGEGRGFEIAQGRLGPGRLHHCMR LIGAAERGMQMMAQRAVSRRVFGKLIAQQGSFLSDMAKCRIELEKTRLLVLEAADQLDRHGNKKARGILAMAKVAAPNMA LKVLDMAMQVHGAAGVSSDTVLAHLWATARTLRIADGPDEVHLGTIAKLELQRAKL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.200.20
12 122 111 6.5E-32 –
PANTHER
PTHR45741
16 341 326 5.4E-302 –
SUPERFAMILY
SSF56112
35 335 301 1.06E-49
IPR011009
CDD
cd05154
37 303 267 1.96572E-91
IPR041726
Pfam
PF01636
39 281 243 1.4E-39
IPR002575
Gene3D
G3DSA:3.90.1200.10
123 351 229 1.3E-69 –
Gene3D
G3DSA:1.10.540.10
363 424 62 1.7E-11
IPR037069
Pfam
PF02771
365 422 58 1.4E-7
IPR013786
SUPERFAMILY
SSF56645
365 553 189 1.96E-58
IPR009100
PANTHER
PTHR45741
366 694 329 5.4E-302 –
Gene3D
G3DSA:2.40.110.10
426 540 115 3.8E-49 –
Pfam
PF02770
427 528 102 1.4E-17
IPR006091
SUPERFAMILY
SSF47203
538 692 155 3.38E-39
IPR036250
Pfam
PF00441
540 688 149 7.7E-32
IPR009075
Gene3D
G3DSA:1.20.140.10
541 695 155 5.6E-34 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016627
Molecular function Oxidoreductase activity, acting on the CH-CH group of donors Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
Subterm of
GO:0050660
Molecular function Flavin adenine dinucleotide binding Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0252100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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